Wall clock time and date at job start Wed Apr 1 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38236 * 120.00024 * 2 1 4 4 C 1.38241 * 119.99980 * 179.72846 * 3 2 1 5 5 C 1.38233 * 119.99742 * 0.24885 * 4 3 2 6 6 C 1.50706 * 119.99844 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47069 * 90.00308 * 6 5 4 8 8 H 1.09000 * 109.46898 * 305.00016 * 7 6 5 9 9 C 1.53003 * 109.47072 * 64.99782 * 7 6 5 10 10 C 1.50698 * 109.47151 * 185.00078 * 7 6 5 11 11 O 1.21279 * 120.00181 * 359.97438 * 10 7 6 12 12 N 1.34772 * 120.00112 * 179.97438 * 10 7 6 13 13 C 1.46495 * 120.00349 * 180.02562 * 12 10 7 14 14 C 1.50698 * 109.47416 * 180.02562 * 13 12 10 15 15 C 1.29457 * 117.69538 * 95.00267 * 14 13 12 16 16 C 1.50318 * 123.65175 * 180.86061 * 15 14 13 17 17 N 1.47011 * 109.16794 * 349.01579 * 16 15 14 18 18 C 1.36931 * 121.38100 * 222.96979 * 17 16 15 19 19 H 1.07996 * 120.00081 * 155.97428 * 18 17 16 20 20 C 1.38816 * 119.99856 * 335.98404 * 18 17 16 21 21 N 1.31620 * 119.99658 * 344.48639 * 20 18 17 22 22 Si 1.86795 * 120.00188 * 164.49510 * 20 18 17 23 23 H 1.48503 * 109.47215 * 94.44877 * 22 20 18 24 24 H 1.48500 * 109.47120 * 214.45018 * 22 20 18 25 25 H 1.48506 * 109.47061 * 334.44739 * 22 20 18 26 26 C 1.47343 * 117.24489 * 42.95002 * 17 16 15 27 27 C 1.49967 * 117.69502 * 274.73871 * 14 13 12 28 28 C 1.38232 * 120.00305 * 0.02733 * 5 4 3 29 29 C 1.38233 * 120.00264 * 180.25935 * 2 1 3 30 30 H 1.09005 * 109.47057 * 89.99827 * 1 2 3 31 31 H 1.08997 * 109.47206 * 209.99839 * 1 2 3 32 32 H 1.08998 * 109.46883 * 330.00150 * 1 2 3 33 33 H 1.07994 * 120.00234 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.00008 * 180.27887 * 4 3 2 35 35 H 1.08993 * 109.46964 * 210.00529 * 6 5 4 36 36 H 1.08999 * 109.47021 * 330.00474 * 6 5 4 37 37 H 1.09002 * 109.46640 * 60.00653 * 9 7 6 38 38 H 1.08999 * 109.46707 * 179.97438 * 9 7 6 39 39 H 1.08995 * 109.47354 * 300.00045 * 9 7 6 40 40 H 0.97003 * 120.00175 * 0.02562 * 12 10 7 41 41 H 1.09000 * 109.47015 * 300.00057 * 13 12 10 42 42 H 1.09001 * 109.46874 * 59.99921 * 13 12 10 43 43 H 1.07997 * 118.17607 * 0.87852 * 15 14 13 44 44 H 1.08999 * 109.52393 * 108.91966 * 16 15 14 45 45 H 1.09001 * 109.52061 * 229.11432 * 16 15 14 46 46 H 0.97004 * 119.99874 * 180.02562 * 21 20 18 47 47 H 1.08995 * 109.78224 * 57.81279 * 26 17 16 48 48 H 1.09008 * 109.77742 * 178.62050 * 26 17 16 49 49 H 1.09010 * 109.31449 * 281.29359 * 27 14 13 50 50 H 1.09005 * 109.31213 * 40.71436 * 27 14 13 51 51 H 1.07998 * 120.00411 * 179.97438 * 28 5 4 52 52 H 1.08010 * 119.99830 * 0.03780 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0057 5 6 4.2717 0.0000 0.0061 6 6 5.7787 0.0000 0.0129 7 6 6.2822 -0.0033 1.4577 8 1 5.8451 0.8373 1.9966 9 6 5.8743 -1.3122 2.1370 10 6 7.7841 0.1205 1.4665 11 8 8.3919 0.2027 0.4203 12 7 8.4518 0.1399 2.6371 13 6 9.9117 0.2608 2.6458 14 6 10.4076 0.2574 4.0688 15 6 10.7941 -0.8725 4.5686 16 6 11.2942 -1.0327 5.9771 17 7 11.5148 0.2965 6.5652 18 6 12.6291 0.5695 7.3127 19 1 12.9792 1.5866 7.4084 20 6 13.3088 -0.4612 7.9472 21 7 12.7347 -1.6366 8.0926 22 14 15.0381 -0.1799 8.5950 23 1 14.9738 0.2005 10.0290 24 1 15.8305 -1.4273 8.4488 25 1 15.6850 0.9107 7.8220 26 6 10.4874 1.3230 6.3166 27 6 10.4244 1.5644 4.8041 28 6 3.5805 -1.1971 0.0004 29 6 2.1982 -1.1971 -0.0054 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6582 2.1324 -0.0004 34 1 4.1205 2.1324 0.0102 35 1 6.1443 -0.8888 -0.5013 36 1 6.1443 0.8911 -0.4972 37 1 6.3114 -2.1528 1.5980 38 1 6.2334 -1.3146 3.1661 39 1 4.7880 -1.4017 2.1306 40 1 7.9656 0.0737 3.4739 41 1 10.3491 -0.5798 2.1070 42 1 10.2019 1.1933 2.1616 43 1 10.7552 -1.7487 3.9386 44 1 10.5544 -1.5737 6.5670 45 1 12.2323 -1.5878 5.9695 46 1 13.2095 -2.3567 8.5364 47 1 9.5208 0.9727 6.6786 48 1 10.7595 2.2479 6.8252 49 1 11.2936 2.1431 4.4911 50 1 9.5187 2.1229 4.5674 51 1 4.1205 -2.1325 0.0003 52 1 1.6581 -2.1325 -0.0103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677636563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:28 Heat of formation + Delta-G solvation = 3.724402 kcal Electronic energy + Delta-G solvation = -28734.900114 eV Core-core repulsion = 24892.096798 eV Total energy + Delta-G solvation = -3842.803315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.29053 -39.45422 -37.81803 -35.55370 -34.91440 -33.04735 -32.34019 -31.21078 -30.84650 -29.74721 -28.60886 -26.95877 -25.79766 -24.40714 -23.12271 -22.85305 -22.59988 -21.14569 -20.88545 -19.90029 -17.75254 -17.37826 -16.37201 -15.92644 -15.91069 -15.69222 -15.32986 -15.23013 -15.03369 -14.35007 -14.14158 -14.04400 -13.84297 -13.70947 -13.57246 -13.42741 -13.19625 -12.85904 -12.79498 -12.58965 -12.30486 -12.24157 -12.20313 -12.03952 -11.59463 -11.45197 -11.35394 -11.31714 -11.23627 -11.07586 -10.93743 -10.74864 -10.42262 -10.33717 -9.85886 -9.81671 -9.60568 -9.17854 -8.95350 -8.74809 -8.70015 -8.08148 -6.77617 -5.82835 -3.21457 1.03915 1.13276 2.58096 2.66720 3.36007 3.39722 3.43384 3.45833 3.59415 4.45193 4.47112 4.49585 4.60254 4.65350 4.73351 4.75491 4.91546 4.98390 5.10036 5.19157 5.22399 5.25920 5.33025 5.35226 5.38003 5.44073 5.50939 5.55235 5.56260 5.61538 5.79761 5.80839 5.82238 5.92737 5.95502 5.97295 6.05007 6.14190 6.15247 6.30036 6.31246 6.40196 6.44564 6.53151 6.70369 6.74603 6.83745 7.13677 7.22688 7.29761 7.59513 7.70249 7.79508 8.26157 8.34924 9.16448 9.79226 10.37103 11.27694 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025628 B = 0.001710 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.289121 B =16372.658300 C =16583.590017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.082 4.082 6 C -0.061 4.061 7 C -0.104 4.104 8 H 0.097 0.903 9 C -0.147 4.147 10 C 0.514 3.486 11 O -0.547 6.547 12 N -0.719 5.719 13 C 0.157 3.843 14 C -0.167 4.167 15 C -0.124 4.124 16 C 0.194 3.806 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.069 0.931 20 C -0.001 4.001 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.144 3.856 27 C -0.090 4.090 28 C -0.110 4.110 29 C -0.120 4.120 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.401 0.599 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.041 0.959 45 H 0.093 0.907 46 H 0.254 0.746 47 H 0.023 0.977 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.052 0.948 51 H 0.122 0.878 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.652 2.095 -15.697 27.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.082 4.082 6 C -0.099 4.099 7 C -0.125 4.125 8 H 0.115 0.885 9 C -0.205 4.205 10 C 0.300 3.700 11 O -0.425 6.425 12 N -0.370 5.370 13 C 0.034 3.966 14 C -0.167 4.167 15 C -0.145 4.145 16 C 0.069 3.931 17 N -0.318 5.318 18 C -0.376 4.376 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.129 4.129 28 C -0.128 4.128 29 C -0.138 4.138 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.236 0.764 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.071 0.929 51 H 0.140 0.860 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.096 2.020 -16.352 27.563 hybrid contribution 0.723 -0.019 0.741 1.035 sum -21.373 2.001 -15.611 26.543 Atomic orbital electron populations 1.20787 0.91368 1.02731 1.02215 1.19918 0.96003 0.93288 1.00134 1.21020 0.94171 0.97487 1.01058 1.21074 0.94102 0.97718 1.00140 1.19882 0.95505 0.93181 0.99671 1.20400 0.90049 1.04438 0.95020 1.21265 0.92094 1.00903 0.98258 0.88491 1.21871 1.02496 0.95620 1.00511 1.20617 0.89715 0.75973 0.83738 1.90687 1.70096 1.49963 1.31772 1.46214 1.08203 1.74067 1.08520 1.20450 0.79031 1.01614 0.95480 1.20504 1.05434 0.96421 0.94381 1.23280 0.95419 0.96081 0.99712 1.19760 1.00268 0.87806 0.85280 1.44124 1.21050 1.07940 1.58698 1.19182 1.01411 0.93856 1.23113 0.91368 1.24986 0.99473 0.96849 0.98595 1.70009 1.36197 1.03194 1.46098 0.86243 0.84500 0.77157 0.78669 1.21487 1.21559 1.20466 1.20991 0.92128 0.93319 0.91843 1.20787 1.00162 0.93894 0.98044 1.21082 0.94035 0.97709 0.99990 1.21028 0.94195 0.97482 1.01119 0.91311 0.91600 0.91614 0.86222 0.86040 0.90273 0.90089 0.92021 0.91875 0.91080 0.76420 0.91751 0.91681 0.88816 0.94110 0.88886 0.93610 0.95882 0.92469 0.91730 0.92943 0.85976 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.00 0.36 -0.25 16 2 C -0.09 -0.71 5.88 -104.63 -0.62 -1.33 16 3 C -0.12 -0.93 9.70 -39.58 -0.38 -1.32 16 4 C -0.11 -0.94 9.70 -39.58 -0.38 -1.33 16 5 C -0.08 -0.72 4.71 -104.62 -0.49 -1.22 16 6 C -0.06 -0.59 4.19 -27.88 -0.12 -0.70 16 7 C -0.10 -0.99 2.71 -91.77 -0.25 -1.24 16 8 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 9 C -0.15 -1.23 8.66 37.16 0.32 -0.91 16 10 C 0.51 6.63 7.15 -10.99 -0.08 6.55 16 11 O -0.55 -9.07 15.92 5.56 0.09 -8.98 16 12 N -0.72 -9.09 5.44 -61.48 -0.33 -9.42 16 13 C 0.16 2.33 5.66 -5.20 -0.03 2.30 16 14 C -0.17 -2.80 5.22 -100.99 -0.53 -3.33 16 15 C -0.12 -2.31 9.47 -35.78 -0.34 -2.65 16 16 C 0.19 4.50 5.23 -5.10 -0.03 4.47 16 17 N -0.59 -14.59 3.01 -173.56 -0.52 -15.12 16 18 C -0.25 -6.67 9.71 -15.06 -0.15 -6.81 16 19 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 20 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 21 N -0.91 -25.88 11.08 55.49 0.61 -25.26 16 22 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 C 0.14 2.90 6.59 -3.43 -0.02 2.87 16 27 C -0.09 -1.53 5.95 -28.09 -0.17 -1.70 16 28 C -0.11 -0.90 7.96 -39.58 -0.32 -1.22 16 29 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 39 H 0.07 0.55 6.27 -51.93 -0.33 0.22 16 40 H 0.40 4.46 7.88 -40.82 -0.32 4.13 16 41 H 0.06 1.00 7.78 -51.93 -0.40 0.59 16 42 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 43 H 0.09 1.58 7.73 -52.49 -0.41 1.17 16 44 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 1.13 7.96 -51.92 -0.41 0.71 16 49 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 50 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16 52 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 416.83 15.07 6.28 6.28 Total: -1.00 -31.04 416.83 -11.47 -42.51 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.89 Total: 2.75 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -3.68 Total: -9.25 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.24 Total: -49.80 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.04 -11.47 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677636563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.230 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds