Wall clock time and date at job start Wed Apr 1 2020 01:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38236 * 120.00024 * 2 1 4 4 C 1.38241 * 119.99980 * 179.72846 * 3 2 1 5 5 C 1.38233 * 119.99742 * 0.24885 * 4 3 2 6 6 C 1.50706 * 119.99844 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47069 * 90.00308 * 6 5 4 8 8 H 1.09000 * 109.46898 * 305.00016 * 7 6 5 9 9 C 1.53003 * 109.47072 * 64.99782 * 7 6 5 10 10 C 1.50698 * 109.47151 * 185.00078 * 7 6 5 11 11 O 1.21279 * 120.00181 * 359.97438 * 10 7 6 12 12 N 1.34772 * 120.00112 * 179.97438 * 10 7 6 13 13 C 1.46495 * 120.00349 * 180.02562 * 12 10 7 14 14 C 1.50698 * 109.47416 * 180.02562 * 13 12 10 15 15 C 1.29457 * 117.69538 * 95.00267 * 14 13 12 16 16 C 1.50318 * 123.65175 * 180.86061 * 15 14 13 17 17 N 1.47011 * 109.16794 * 349.01579 * 16 15 14 18 18 C 1.36931 * 121.38100 * 222.96979 * 17 16 15 19 19 H 1.07996 * 120.00081 * 155.97428 * 18 17 16 20 20 C 1.38816 * 119.99856 * 335.98404 * 18 17 16 21 21 N 1.31620 * 119.99658 * 344.48639 * 20 18 17 22 22 Si 1.86795 * 120.00188 * 164.49510 * 20 18 17 23 23 H 1.48503 * 109.47215 * 94.44877 * 22 20 18 24 24 H 1.48500 * 109.47120 * 214.45018 * 22 20 18 25 25 H 1.48506 * 109.47061 * 334.44739 * 22 20 18 26 26 C 1.47343 * 117.24489 * 42.95002 * 17 16 15 27 27 C 1.49967 * 117.69502 * 274.73871 * 14 13 12 28 28 C 1.38232 * 120.00305 * 0.02733 * 5 4 3 29 29 C 1.38233 * 120.00264 * 180.25935 * 2 1 3 30 30 H 1.09005 * 109.47057 * 89.99827 * 1 2 3 31 31 H 1.08997 * 109.47206 * 209.99839 * 1 2 3 32 32 H 1.08998 * 109.46883 * 330.00150 * 1 2 3 33 33 H 1.07994 * 120.00234 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.00008 * 180.27887 * 4 3 2 35 35 H 1.08993 * 109.46964 * 210.00529 * 6 5 4 36 36 H 1.08999 * 109.47021 * 330.00474 * 6 5 4 37 37 H 1.09002 * 109.46640 * 60.00653 * 9 7 6 38 38 H 1.08999 * 109.46707 * 179.97438 * 9 7 6 39 39 H 1.08995 * 109.47354 * 300.00045 * 9 7 6 40 40 H 0.97003 * 120.00175 * 0.02562 * 12 10 7 41 41 H 1.09000 * 109.47015 * 300.00057 * 13 12 10 42 42 H 1.09001 * 109.46874 * 59.99921 * 13 12 10 43 43 H 1.07997 * 118.17607 * 0.87852 * 15 14 13 44 44 H 1.08999 * 109.52393 * 108.91966 * 16 15 14 45 45 H 1.09001 * 109.52061 * 229.11432 * 16 15 14 46 46 H 0.97004 * 119.99874 * 180.02562 * 21 20 18 47 47 H 1.08995 * 109.78224 * 57.81279 * 26 17 16 48 48 H 1.09008 * 109.77742 * 178.62050 * 26 17 16 49 49 H 1.09010 * 109.31449 * 281.29359 * 27 14 13 50 50 H 1.09005 * 109.31213 * 40.71436 * 27 14 13 51 51 H 1.07998 * 120.00411 * 179.97438 * 28 5 4 52 52 H 1.08010 * 119.99830 * 0.03780 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0057 5 6 4.2717 0.0000 0.0061 6 6 5.7787 0.0000 0.0129 7 6 6.2822 -0.0033 1.4577 8 1 5.8451 0.8373 1.9966 9 6 5.8743 -1.3122 2.1370 10 6 7.7841 0.1205 1.4665 11 8 8.3919 0.2027 0.4203 12 7 8.4518 0.1399 2.6371 13 6 9.9117 0.2608 2.6458 14 6 10.4076 0.2574 4.0688 15 6 10.7941 -0.8725 4.5686 16 6 11.2942 -1.0327 5.9771 17 7 11.5148 0.2965 6.5652 18 6 12.6291 0.5695 7.3127 19 1 12.9792 1.5866 7.4084 20 6 13.3088 -0.4612 7.9472 21 7 12.7347 -1.6366 8.0926 22 14 15.0381 -0.1799 8.5950 23 1 14.9738 0.2005 10.0290 24 1 15.8305 -1.4273 8.4488 25 1 15.6850 0.9107 7.8220 26 6 10.4874 1.3230 6.3166 27 6 10.4244 1.5644 4.8041 28 6 3.5805 -1.1971 0.0004 29 6 2.1982 -1.1971 -0.0054 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6582 2.1324 -0.0004 34 1 4.1205 2.1324 0.0102 35 1 6.1443 -0.8888 -0.5013 36 1 6.1443 0.8911 -0.4972 37 1 6.3114 -2.1528 1.5980 38 1 6.2334 -1.3146 3.1661 39 1 4.7880 -1.4017 2.1306 40 1 7.9656 0.0737 3.4739 41 1 10.3491 -0.5798 2.1070 42 1 10.2019 1.1933 2.1616 43 1 10.7552 -1.7487 3.9386 44 1 10.5544 -1.5737 6.5670 45 1 12.2323 -1.5878 5.9695 46 1 13.2095 -2.3567 8.5364 47 1 9.5208 0.9727 6.6786 48 1 10.7595 2.2479 6.8252 49 1 11.2936 2.1431 4.4911 50 1 9.5187 2.1229 4.5674 51 1 4.1205 -2.1325 0.0003 52 1 1.6581 -2.1325 -0.0103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677636563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:26 Heat of formation + Delta-G solvation = -11.585385 kcal Electronic energy + Delta-G solvation = -28735.563996 eV Core-core repulsion = 24892.096798 eV Total energy + Delta-G solvation = -3843.467197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.20401 -40.22483 -39.34452 -36.54362 -36.13755 -34.55924 -33.20047 -32.42969 -31.77717 -31.41402 -29.32162 -28.43758 -26.54272 -25.90624 -24.45196 -23.86151 -23.45314 -22.72165 -21.61038 -20.83520 -19.49266 -18.44789 -17.48607 -17.19845 -16.91133 -16.73374 -16.57698 -16.15919 -15.93312 -15.69971 -15.42022 -15.25856 -15.01967 -14.86137 -14.50296 -14.35368 -14.21079 -13.99920 -13.81667 -13.55191 -13.40427 -13.26683 -13.19394 -12.93569 -12.87556 -12.79839 -12.75654 -12.58684 -12.23854 -12.12367 -12.07872 -12.00268 -11.84787 -11.71151 -11.70037 -11.27815 -10.85743 -10.68215 -10.08299 -9.76463 -9.65227 -9.32438 -8.74959 -7.88894 -5.29721 0.44384 0.54970 1.18915 1.46370 1.48391 1.57798 1.64263 2.42455 2.51020 2.88451 3.28580 3.62040 3.64912 3.85756 3.88060 3.92582 3.97078 4.07769 4.09615 4.20903 4.24903 4.41922 4.43349 4.47911 4.53366 4.64525 4.66877 4.74400 4.77514 4.83550 4.85186 4.87054 4.89823 4.91958 4.94918 5.03203 5.10033 5.17700 5.21385 5.24254 5.29310 5.34780 5.37615 5.44143 5.47981 5.57052 5.61318 5.76319 5.76650 5.78287 6.16392 6.18051 6.33650 6.57042 7.13364 7.24107 7.83465 8.37050 9.19714 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025628 B = 0.001710 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.289121 B =16372.658300 C =16583.590017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.128 4.128 4 C -0.122 4.122 5 C -0.092 4.092 6 C -0.055 4.055 7 C -0.094 4.094 8 H 0.114 0.886 9 C -0.143 4.143 10 C 0.515 3.485 11 O -0.585 6.585 12 N -0.712 5.712 13 C 0.167 3.833 14 C -0.139 4.139 15 C -0.142 4.142 16 C 0.205 3.795 17 N -0.615 5.615 18 C -0.257 4.257 19 H 0.070 0.930 20 C -0.054 4.054 21 N -0.939 5.939 22 Si 0.967 3.033 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.271 1.271 26 C 0.138 3.862 27 C -0.084 4.084 28 C -0.117 4.117 29 C -0.129 4.129 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.412 0.588 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.015 0.985 45 H 0.056 0.944 46 H 0.250 0.750 47 H 0.029 0.971 48 H 0.059 0.941 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.129 0.871 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.399 3.207 -16.480 29.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.092 4.092 6 C -0.093 4.093 7 C -0.115 4.115 8 H 0.132 0.868 9 C -0.201 4.201 10 C 0.303 3.697 11 O -0.465 6.465 12 N -0.363 5.363 13 C 0.043 3.957 14 C -0.140 4.140 15 C -0.162 4.162 16 C 0.080 3.920 17 N -0.339 5.339 18 C -0.387 4.387 19 H 0.088 0.912 20 C -0.248 4.248 21 N -0.586 5.586 22 Si 0.795 3.205 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.196 1.196 26 C 0.013 3.987 27 C -0.122 4.122 28 C -0.135 4.135 29 C -0.147 4.147 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.248 0.752 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.033 0.967 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.106 0.894 51 H 0.147 0.853 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.877 3.156 -17.131 29.556 hybrid contribution 1.177 -0.296 0.954 1.544 sum -22.700 2.859 -16.177 28.021 Atomic orbital electron populations 1.20826 0.89841 1.03486 1.02865 1.20250 0.97289 0.93180 0.99318 1.21267 0.94105 0.98376 1.00881 1.21237 0.94616 0.97897 1.00265 1.19825 0.94845 0.93715 1.00825 1.20288 0.90779 1.03384 0.94811 1.21243 0.89375 1.02205 0.98663 0.86831 1.21854 1.03098 0.94624 1.00510 1.21168 0.90958 0.74701 0.82917 1.90677 1.71128 1.51657 1.33087 1.46072 1.07234 1.73819 1.09173 1.20210 0.80353 1.01573 0.93521 1.20614 1.02779 0.95565 0.95021 1.22938 0.97714 0.97844 0.97720 1.19403 0.98001 0.86925 0.87689 1.44400 1.21653 1.09096 1.58737 1.19513 1.02431 0.93955 1.22838 0.91243 1.25723 1.02821 0.96793 0.99513 1.70164 1.37351 1.03837 1.47203 0.85264 0.80320 0.76848 0.78047 1.21220 1.21982 1.19632 1.21184 0.91163 0.92214 0.94121 1.20725 1.01824 0.94215 0.95481 1.21225 0.94488 0.97826 0.99973 1.21281 0.94155 0.98354 1.00889 0.90631 0.90864 0.90896 0.84755 0.85405 0.91267 0.91242 0.92514 0.91302 0.90104 0.75192 0.92258 0.91490 0.87071 0.96725 0.92567 0.94130 0.95264 0.92283 0.91920 0.89379 0.85305 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 71.23 0.71 -0.26 16 2 C -0.10 -1.34 5.88 -19.87 -0.12 -1.46 16 3 C -0.13 -1.79 9.70 22.27 0.22 -1.57 16 4 C -0.12 -1.89 9.70 22.27 0.22 -1.67 16 5 C -0.09 -1.51 4.71 -19.86 -0.09 -1.60 16 6 C -0.05 -1.00 4.19 29.85 0.13 -0.87 16 7 C -0.09 -1.61 2.71 -11.54 -0.03 -1.64 16 8 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 9 C -0.14 -2.11 8.66 71.98 0.62 -1.49 16 10 C 0.51 12.43 7.15 87.66 0.63 13.05 16 11 O -0.59 -18.86 15.92 -3.03 -0.05 -18.91 16 12 N -0.71 -16.32 5.44 -466.81 -2.54 -18.85 16 13 C 0.17 4.59 5.66 85.63 0.48 5.07 16 14 C -0.14 -4.42 5.22 -15.14 -0.08 -4.50 16 15 C -0.14 -5.21 9.47 27.10 0.26 -4.95 16 16 C 0.20 9.77 5.23 85.42 0.45 10.22 16 17 N -0.61 -30.40 3.01 -703.02 -2.11 -32.51 16 18 C -0.26 -14.06 9.71 84.04 0.82 -13.25 16 19 H 0.07 3.69 7.88 -2.91 -0.02 3.66 16 20 C -0.05 -2.98 5.01 84.86 0.42 -2.56 16 21 N -0.94 -55.02 11.08 21.65 0.24 -54.78 16 22 Si 0.97 44.84 29.58 68.60 2.03 46.87 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.14 5.41 6.59 86.31 0.57 5.98 16 27 C -0.08 -2.65 5.95 29.71 0.18 -2.47 16 28 C -0.12 -1.76 7.96 22.27 0.18 -1.58 16 29 C -0.13 -1.77 9.70 22.27 0.22 -1.55 16 30 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 32 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 33 H 0.13 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 35 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 36 H 0.07 1.41 7.90 -2.39 -0.02 1.39 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.94 7.56 -2.39 -0.02 0.93 16 39 H 0.08 1.06 6.27 -2.39 -0.01 1.05 16 40 H 0.41 7.94 7.88 -92.71 -0.73 7.21 16 41 H 0.06 1.74 7.78 -2.39 -0.02 1.72 16 42 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 43 H 0.11 3.67 7.73 -2.91 -0.02 3.65 16 44 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 3.06 6.41 -2.39 -0.02 3.04 16 46 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.06 2.25 7.96 -2.38 -0.02 2.23 16 49 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 50 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 51 H 0.13 1.67 8.04 -2.91 -0.02 1.65 16 52 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -67.81 416.83 3.50 -64.31 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.16 Total: 20.97 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.77 Total: -7.10 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.41 Total: -106.15 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -67.81 3.50 -64.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677636563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.725 kcal (2) G-P(sol) polarization free energy of solvation -67.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds