Wall clock time and date at job start Wed Apr 1 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 120.00425 * 2 1 4 4 H 1.07998 * 119.99763 * 144.10126 * 3 2 1 5 5 C 1.38806 * 119.99935 * 324.10163 * 3 2 1 6 6 N 1.31621 * 119.99969 * 333.85978 * 5 3 2 7 7 Si 1.86798 * 120.00032 * 154.13270 * 5 3 2 8 8 H 1.48500 * 109.47356 * 179.72620 * 7 5 3 9 9 H 1.48493 * 109.47304 * 299.72470 * 7 5 3 10 10 H 1.48504 * 109.46863 * 59.72576 * 7 5 3 11 11 C 1.46507 * 119.99709 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46900 * 270.00058 * 11 2 1 13 13 H 1.09002 * 110.88301 * 302.56863 * 12 11 2 14 14 C 1.55153 * 111.00598 * 66.45384 * 12 11 2 15 15 C 1.54316 * 102.94412 * 153.57752 * 14 12 11 16 16 N 1.47023 * 107.26972 * 337.80564 * 15 14 12 17 17 C 1.34781 * 125.64728 * 178.89349 * 16 15 14 18 18 O 1.21288 * 119.99587 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00090 * 0.02930 * 17 16 15 20 20 H 1.09001 * 115.54996 * 328.54661 * 19 17 16 21 21 C 1.53002 * 117.49793 * 182.88023 * 19 17 16 22 22 C 1.52994 * 117.50127 * 114.21749 * 19 17 16 23 23 C 1.52997 * 117.50015 * 214.97854 * 22 19 17 24 24 C 1.50708 * 117.49905 * 359.97438 * 22 19 17 25 25 C 1.38241 * 119.99364 * 301.76203 * 24 22 19 26 26 C 1.38236 * 119.99785 * 179.78599 * 25 24 22 27 27 C 1.38237 * 119.99646 * 0.44994 * 26 25 24 28 28 C 1.38231 * 120.00262 * 359.80242 * 27 26 25 29 29 C 1.38228 * 120.00225 * 122.04085 * 24 22 19 30 30 C 1.47422 * 108.70270 * 358.94383 * 16 15 14 31 31 H 1.09003 * 109.47170 * 90.09323 * 1 2 3 32 32 H 1.08998 * 109.47404 * 210.09495 * 1 2 3 33 33 H 1.08998 * 109.46634 * 330.09507 * 1 2 3 34 34 H 0.96999 * 120.00224 * 2.08256 * 6 5 3 35 35 H 1.08994 * 109.47145 * 29.99756 * 11 2 1 36 36 H 1.08999 * 109.46835 * 150.00265 * 11 2 1 37 37 H 1.09001 * 110.72089 * 271.94003 * 14 12 11 38 38 H 1.09003 * 110.72159 * 35.21030 * 14 12 11 39 39 H 1.09000 * 109.88665 * 97.22172 * 15 14 12 40 40 H 1.08998 * 109.88540 * 218.39206 * 15 14 12 41 41 H 1.08998 * 117.49886 * 359.97438 * 21 19 17 42 42 H 1.08997 * 117.50182 * 145.01957 * 21 19 17 43 43 H 1.08997 * 109.47503 * 60.00297 * 23 22 19 44 44 H 1.09005 * 109.47153 * 180.02562 * 23 22 19 45 45 H 1.09004 * 109.46959 * 299.99504 * 23 22 19 46 46 H 1.08000 * 120.00225 * 0.02562 * 25 24 22 47 47 H 1.07994 * 120.00077 * 180.27560 * 26 25 24 48 48 H 1.07999 * 119.99506 * 179.83288 * 27 26 25 49 49 H 1.08000 * 119.99835 * 179.97438 * 28 27 26 50 50 H 1.07999 * 120.00614 * 359.97438 * 29 24 22 51 51 H 1.09001 * 110.36606 * 265.28497 * 30 16 15 52 52 H 1.09001 * 110.36619 * 142.96778 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0759 1.2746 0.5484 5 6 1.6536 2.2738 -0.7048 6 7 0.8712 2.0822 -1.7458 7 14 2.1022 4.0097 -0.1807 8 1 1.4544 4.9855 -1.0935 9 1 1.6327 4.2443 1.2084 10 1 3.5763 4.1793 -0.2402 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4418 13 1 3.0020 -0.9468 1.9912 14 6 1.1224 -2.0634 2.1589 15 6 1.5674 -3.0760 3.2349 16 7 2.8440 -3.6535 2.7894 17 6 3.5717 -4.5655 3.4642 18 8 4.6149 -4.9734 2.9992 19 6 3.0890 -5.0783 4.7965 20 1 2.5138 -4.3699 5.3926 21 6 3.9920 -6.0612 5.5444 22 6 2.7013 -6.5556 4.8865 23 6 1.5363 -6.9255 5.8066 24 6 2.8308 -7.3864 3.6358 25 6 2.1416 -7.0267 2.4927 26 6 2.2638 -7.7862 1.3442 27 6 3.0678 -8.9107 1.3415 28 6 3.7529 -9.2733 2.4860 29 6 3.6341 -8.5113 3.6333 30 6 3.1969 -3.0689 1.4828 31 1 -0.3634 -0.0017 -1.0277 32 1 -0.3634 -0.8891 0.5153 33 1 -0.3632 0.8908 0.5124 34 1 0.6169 1.1819 -2.0023 35 1 1.6084 -2.0282 -0.5147 36 1 3.1499 -1.1382 -0.5143 37 1 0.6865 -1.1772 2.6201 38 1 0.4195 -2.5230 1.4639 39 1 1.7038 -2.5672 4.1891 40 1 0.8198 -3.8628 3.3354 41 1 4.9350 -6.3372 5.0726 42 1 4.0106 -5.9997 6.6324 43 1 0.6343 -6.4107 5.4757 44 1 1.3737 -8.0028 5.7719 45 1 1.7712 -6.6267 6.8283 46 1 1.5107 -6.1501 2.4958 47 1 1.7289 -7.5027 0.4499 48 1 3.1612 -9.5056 0.4449 49 1 4.3807 -10.1521 2.4840 50 1 4.1693 -8.7947 4.5275 51 1 2.8545 -3.7140 0.6737 52 1 4.2737 -2.9134 1.4152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691972467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:45 Heat of formation + Delta-G solvation = 33.215167 kcal Electronic energy + Delta-G solvation = -30407.152344 eV Core-core repulsion = 26565.627844 eV Total energy + Delta-G solvation = -3841.524500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.75421 -39.26987 -37.95329 -36.67677 -35.52196 -32.37373 -31.02030 -30.89818 -30.32316 -29.32977 -28.86856 -26.47893 -25.56343 -23.98438 -23.33163 -22.80471 -22.12381 -21.17175 -20.02859 -19.83502 -18.86516 -17.57160 -17.12509 -16.69836 -16.03698 -15.72483 -15.12904 -14.99262 -14.65405 -14.40517 -13.94711 -13.87214 -13.74568 -13.58310 -13.51318 -13.39724 -13.25227 -12.96087 -12.86611 -12.59620 -12.41349 -12.36650 -12.00127 -11.82936 -11.35907 -11.32368 -11.26504 -11.22352 -10.90444 -10.71369 -10.66300 -10.53592 -10.40037 -10.24366 -10.04241 -10.02972 -9.72440 -9.41601 -9.02049 -8.85609 -8.53631 -8.29339 -6.78860 -6.08846 -3.33789 1.21639 1.29518 2.45495 2.98853 3.47850 3.50201 3.53629 3.65885 3.68644 4.21753 4.38443 4.50294 4.54600 4.63751 4.81642 4.81864 4.85432 4.88163 4.98202 5.01401 5.10983 5.27813 5.31018 5.34251 5.37400 5.44085 5.47021 5.51430 5.52496 5.54366 5.66641 5.75081 5.78411 5.83955 5.90559 5.92444 5.94436 6.04083 6.15067 6.23808 6.33845 6.34517 6.39670 6.45512 6.47422 6.49323 6.70021 6.76756 6.87233 6.93207 7.03523 7.61264 8.10199 8.25006 8.61620 9.13840 9.84682 10.29101 11.18663 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.002450 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.812342 B =11425.397908 C =11949.813832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.599 5.599 3 C -0.364 4.364 4 H 0.050 0.950 5 C -0.016 4.016 6 N -0.909 5.909 7 Si 1.068 2.932 8 H -0.286 1.286 9 H -0.293 1.293 10 H -0.292 1.292 11 C 0.162 3.838 12 C -0.114 4.114 13 H 0.081 0.919 14 C -0.116 4.116 15 C 0.101 3.899 16 N -0.612 5.612 17 C 0.559 3.441 18 O -0.538 6.538 19 C -0.176 4.176 20 H 0.123 0.877 21 C -0.134 4.134 22 C -0.063 4.063 23 C -0.111 4.111 24 C -0.046 4.046 25 C -0.103 4.103 26 C -0.116 4.116 27 C -0.121 4.121 28 C -0.121 4.121 29 C -0.105 4.105 30 C 0.112 3.888 31 H 0.010 0.990 32 H 0.020 0.980 33 H 0.040 0.960 34 H 0.271 0.729 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.120 0.880 51 H 0.064 0.936 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -21.593 14.591 26.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.322 5.322 3 C -0.493 4.493 4 H 0.068 0.932 5 C -0.220 4.220 6 N -0.548 5.548 7 Si 0.898 3.102 8 H -0.211 1.211 9 H -0.220 1.220 10 H -0.219 1.219 11 C 0.034 3.966 12 C -0.136 4.136 13 H 0.100 0.900 14 C -0.154 4.154 15 C -0.022 4.022 16 N -0.346 5.346 17 C 0.347 3.653 18 O -0.415 6.415 19 C -0.197 4.197 20 H 0.141 0.859 21 C -0.171 4.171 22 C -0.064 4.064 23 C -0.168 4.168 24 C -0.046 4.046 25 C -0.121 4.121 26 C -0.134 4.134 27 C -0.139 4.139 28 C -0.139 4.139 29 C -0.123 4.123 30 C -0.010 4.010 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.134 0.866 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.138 0.862 51 H 0.082 0.918 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.588 -20.223 13.980 24.591 hybrid contribution 0.135 -1.394 0.401 1.457 sum 0.722 -21.617 14.381 25.974 Atomic orbital electron populations 1.21040 0.84535 0.98022 0.97808 1.43776 1.00585 1.01244 1.86624 1.19777 1.09423 0.89475 1.30629 0.93193 1.26021 0.99529 1.03711 0.92760 1.70797 1.38453 1.25614 1.19923 0.83464 0.75702 0.75500 0.75526 1.21141 1.22001 1.21857 1.20655 0.96448 0.88468 0.90987 1.23113 0.94786 0.94461 1.01278 0.90028 1.22618 0.98209 0.97913 0.96664 1.22111 0.85008 0.96391 0.98693 1.48443 1.23016 1.41604 1.21512 1.19097 0.83295 0.78087 0.84823 1.90692 1.23495 1.58069 1.69258 1.22432 1.06396 0.93621 0.97286 0.85918 1.23230 0.95012 0.99693 0.99193 1.20205 0.98090 0.91831 0.96239 1.21366 0.95782 1.02119 0.97550 1.18902 0.97420 0.95214 0.93018 1.20942 0.99249 0.99313 0.92601 1.21110 0.99045 0.95296 0.97941 1.21134 0.97360 0.97251 0.98187 1.21085 0.99739 0.99874 0.93172 1.20889 0.98317 0.94753 0.98328 1.22305 1.00531 0.94220 0.83987 0.97194 0.96164 0.94088 0.91769 0.94802 0.93008 0.89903 0.91026 0.91809 0.91974 0.87269 0.87617 0.91723 0.91495 0.91703 0.86582 0.86131 0.86237 0.86168 0.86191 0.91785 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.95 8.95 59.85 0.54 3.48 16 2 N -0.60 -14.39 2.56 -181.11 -0.46 -14.86 16 3 C -0.36 -9.95 9.36 -15.06 -0.14 -10.10 16 4 H 0.05 1.39 7.95 -52.49 -0.42 0.98 16 5 C -0.02 -0.45 4.87 -17.43 -0.08 -0.54 16 6 N -0.91 -27.15 13.19 55.49 0.73 -26.41 16 7 Si 1.07 25.12 29.99 -169.99 -5.10 20.02 16 8 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.16 3.23 5.19 -4.03 -0.02 3.21 16 12 C -0.11 -1.91 3.29 -88.47 -0.29 -2.20 16 13 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 14 C -0.12 -1.64 4.94 -24.90 -0.12 -1.76 16 15 C 0.10 1.20 6.27 -3.07 -0.02 1.18 16 16 N -0.61 -8.61 3.33 -170.53 -0.57 -9.18 16 17 C 0.56 8.16 5.57 -10.99 -0.06 8.10 16 18 O -0.54 -9.78 16.24 5.55 0.09 -9.69 16 19 C -0.18 -1.92 5.28 -91.78 -0.48 -2.41 16 20 H 0.12 1.12 7.58 -51.93 -0.39 0.73 16 21 C -0.13 -1.29 9.20 -26.69 -0.25 -1.53 16 22 C -0.06 -0.60 2.17 -155.62 -0.34 -0.94 16 23 C -0.11 -0.79 9.84 37.16 0.37 -0.42 16 24 C -0.05 -0.52 4.23 -104.62 -0.44 -0.96 16 25 C -0.10 -1.24 8.43 -39.58 -0.33 -1.58 16 26 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 27 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 28 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 29 C -0.10 -1.11 9.53 -39.58 -0.38 -1.49 16 30 C 0.11 1.74 6.38 -2.53 -0.02 1.72 16 31 H 0.01 0.24 6.64 -51.93 -0.34 -0.10 16 32 H 0.02 0.37 6.05 -51.93 -0.31 0.06 16 33 H 0.04 0.98 7.86 -51.93 -0.41 0.57 16 34 H 0.27 8.11 6.20 -40.82 -0.25 7.86 16 35 H 0.03 0.63 8.04 -51.93 -0.42 0.21 16 36 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.00 7.19 -51.93 -0.37 0.62 16 39 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.11 1.25 7.67 -51.93 -0.40 0.85 16 42 H 0.11 0.74 8.05 -51.93 -0.42 0.32 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 45 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 46 H 0.12 1.40 7.86 -52.49 -0.41 0.98 16 47 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 48 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 50 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 51 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 52 H 0.07 1.22 8.04 -51.93 -0.42 0.81 16 LS Contribution 414.17 15.07 6.24 6.24 Total: -1.00 -32.75 414.17 -11.16 -43.91 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.82 Total: 1.21 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -3.27 Total: -11.24 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.30 Total: -50.45 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.10 Total: 20.02 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.75 -11.16 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691972467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.124 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds