Wall clock time and date at job start Wed Apr 1 2020 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.77804 * 2 1 4 4 N 1.46496 * 109.47220 * 303.24153 * 3 2 1 5 5 C 1.36939 * 120.00026 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99615 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00152 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00100 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00006 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47269 * 89.99496 * 9 7 5 11 11 H 1.48501 * 109.47338 * 209.99973 * 9 7 5 12 12 H 1.48505 * 109.47200 * 329.99676 * 9 7 5 13 13 C 1.55398 * 110.69195 * 236.60944 * 2 1 3 14 14 C 1.54905 * 101.66821 * 277.04681 * 13 2 1 15 15 N 1.47423 * 104.83019 * 323.07809 * 14 13 2 16 16 C 1.34779 * 125.64616 * 204.08922 * 15 14 13 17 17 O 1.21278 * 120.00278 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99903 * 0.04121 * 16 15 14 19 19 C 1.53002 * 109.47075 * 173.66881 * 18 16 15 20 20 C 1.50699 * 115.55202 * 294.50556 * 19 18 16 21 21 C 1.38237 * 120.00344 * 113.95067 * 20 19 18 22 22 C 1.38230 * 120.00462 * 179.78747 * 21 20 19 23 23 C 1.38242 * 119.99704 * 0.44580 * 22 21 20 24 24 C 1.38237 * 119.99971 * 359.81221 * 23 22 21 25 25 C 1.38233 * 119.99709 * 359.97438 * 24 23 22 26 26 C 1.52994 * 117.50144 * 148.83169 * 19 18 16 27 27 C 1.53001 * 117.49788 * 80.17356 * 19 18 16 28 28 C 1.47019 * 108.70463 * 24.12533 * 15 14 13 29 29 H 1.09001 * 109.46889 * 296.76083 * 1 2 3 30 30 H 1.09004 * 109.47276 * 56.75649 * 1 2 3 31 31 H 1.08997 * 109.47265 * 176.76087 * 1 2 3 32 32 H 1.09004 * 109.47050 * 63.24119 * 3 2 1 33 33 H 1.09007 * 109.46712 * 183.23687 * 3 2 1 34 34 H 0.97000 * 120.00244 * 359.97438 * 4 3 2 35 35 H 0.96997 * 120.00391 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.88718 * 158.97399 * 13 2 1 37 37 H 1.09000 * 111.07227 * 35.20390 * 13 2 1 38 38 H 1.08995 * 110.36612 * 204.23734 * 14 13 2 39 39 H 1.09004 * 110.45631 * 81.96669 * 14 13 2 40 40 H 1.08997 * 109.47422 * 293.66678 * 18 16 15 41 41 H 1.09001 * 109.47102 * 53.67479 * 18 16 15 42 42 H 1.08006 * 119.99447 * 0.02562 * 21 20 19 43 43 H 1.08002 * 120.00426 * 180.27791 * 22 21 20 44 44 H 1.07998 * 119.99738 * 179.82945 * 23 22 21 45 45 H 1.07993 * 120.00066 * 179.97438 * 24 23 22 46 46 H 1.08007 * 119.99879 * 180.02562 * 25 24 23 47 47 H 1.09011 * 117.49573 * 0.02562 * 26 19 18 48 48 H 1.08998 * 117.50365 * 145.01708 * 26 19 18 49 49 H 1.09001 * 117.49926 * 214.97953 * 27 19 18 50 50 H 1.08998 * 117.49707 * 0.02562 * 27 19 18 51 51 H 1.09002 * 109.87946 * 118.35380 * 28 15 14 52 52 H 1.08999 * 109.88046 * 239.36561 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 7 1.5382 2.1557 -1.1552 5 6 1.8879 3.4630 -1.3647 6 1 2.5576 3.9594 -0.6781 7 6 1.3810 4.1503 -2.4590 8 7 0.5645 3.5454 -3.2954 9 14 1.8576 5.9338 -2.7444 10 1 3.0784 5.9910 -3.5879 11 1 0.7467 6.6390 -3.4328 12 1 2.1266 6.5892 -1.4393 13 6 2.0791 -0.8001 -1.2138 14 6 2.0157 -2.2546 -0.6848 15 7 2.3744 -2.1534 0.7415 16 6 2.8897 -3.1456 1.4942 17 8 3.1476 -2.9489 2.6628 18 6 3.1458 -4.4993 0.8835 19 6 3.8717 -5.3868 1.8967 20 6 5.2620 -4.9422 2.2716 21 6 5.5291 -4.5216 3.5610 22 6 6.8053 -4.1180 3.9061 23 6 7.8125 -4.1262 2.9592 24 6 7.5442 -4.5418 1.6683 25 6 6.2689 -4.9495 1.3245 26 6 3.6032 -6.8918 1.8377 27 6 3.0270 -6.0556 2.9830 28 6 2.0761 -0.7912 1.2072 29 1 -0.3633 0.4627 0.9176 30 1 -0.3634 0.5634 -0.8595 31 1 -0.3634 -1.0260 -0.0581 32 1 1.7691 1.9344 0.9176 33 1 3.1610 1.4062 -0.0580 34 1 0.9370 1.7097 -1.7720 35 1 0.2105 4.0255 -4.0603 36 1 3.1057 -0.5102 -1.4380 37 1 1.4401 -0.6739 -2.0878 38 1 2.7337 -2.8819 -1.2130 39 1 1.0085 -2.6566 -0.7952 40 1 2.1965 -4.9605 0.6111 41 1 3.7633 -4.3851 -0.0074 42 1 4.7414 -4.5120 4.2999 43 1 7.0150 -3.7936 4.9146 44 1 8.8090 -3.8083 3.2280 45 1 8.3309 -4.5478 0.9285 46 1 6.0594 -5.2746 0.3161 47 1 2.9096 -7.2498 1.0767 48 1 4.4320 -7.5605 2.0702 49 1 3.4769 -6.1744 3.9686 50 1 1.9540 -5.8637 2.9755 51 1 1.3263 -0.8255 1.9976 52 1 2.9854 -0.3191 1.5792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699836286.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:56 Heat of formation + Delta-G solvation = 25.110605 kcal Electronic energy + Delta-G solvation = -29968.072980 eV Core-core repulsion = 26126.197040 eV Total energy + Delta-G solvation = -3841.875940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.54394 -39.58962 -38.06094 -36.91928 -34.80896 -32.72687 -31.07578 -30.68515 -30.46623 -29.66797 -29.20265 -26.52915 -25.32893 -23.47470 -23.21071 -22.88671 -22.40336 -21.92735 -20.05533 -19.06290 -18.60660 -17.26960 -17.17473 -16.70036 -16.19216 -15.60259 -15.36680 -14.89835 -14.75046 -14.55123 -14.35449 -13.99527 -13.92725 -13.78578 -13.49325 -13.13775 -13.03285 -12.79197 -12.48139 -12.46409 -12.37584 -12.14614 -12.06967 -11.73142 -11.64732 -11.48587 -11.26640 -11.17600 -11.02021 -10.83344 -10.69107 -10.57181 -10.32450 -10.26802 -10.18067 -9.95769 -9.71755 -9.60713 -8.97329 -8.88301 -8.74688 -8.52366 -6.92595 -5.78115 -3.05924 1.25733 1.35546 2.71838 2.96215 3.43126 3.48721 3.50020 3.52297 3.74508 4.32165 4.41836 4.47521 4.58421 4.62211 4.73028 4.80040 4.90609 4.91445 5.04715 5.07342 5.08947 5.26536 5.29334 5.33419 5.38013 5.39939 5.46585 5.53307 5.56629 5.59189 5.62286 5.71217 5.73603 5.87774 5.91926 5.94709 5.98708 6.02081 6.07021 6.11217 6.24474 6.34851 6.39280 6.42256 6.44695 6.47432 6.57420 6.66253 6.76936 6.84941 6.92741 7.60868 7.70028 8.25705 8.41374 9.52955 10.10000 10.45385 11.44933 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.002327 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.115151 B =12029.591644 C =12910.566512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.728 5.728 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.116 4.116 14 C 0.097 3.903 15 N -0.617 5.617 16 C 0.527 3.473 17 O -0.531 6.531 18 C -0.096 4.096 19 C -0.071 4.071 20 C -0.041 4.041 21 C -0.086 4.086 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.166 4.166 27 C -0.156 4.156 28 C 0.121 3.879 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.095 0.905 51 H 0.065 0.935 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 -23.578 9.447 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C 0.041 3.959 4 N -0.373 5.373 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.154 4.154 14 C -0.026 4.026 15 N -0.351 5.351 16 C 0.315 3.685 17 O -0.407 6.407 18 C -0.136 4.136 19 C -0.071 4.071 20 C -0.041 4.041 21 C -0.104 4.104 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.132 4.132 26 C -0.203 4.203 27 C -0.193 4.193 28 C -0.002 4.002 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.114 0.886 51 H 0.084 0.916 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.519 -23.369 10.157 26.567 hybrid contribution 0.030 1.051 -0.570 1.196 sum 7.549 -22.318 9.587 25.436 Atomic orbital electron populations 1.21755 0.93342 1.00673 1.03122 1.21834 0.96399 0.96154 0.93449 1.20586 0.95637 0.87950 0.91734 1.42339 1.56755 1.10790 1.27421 1.19229 1.22685 0.87942 1.07003 0.91250 1.24707 1.00066 0.98319 0.97856 1.69642 1.36223 1.36337 1.16134 0.86198 0.77415 0.84915 0.77720 1.21768 1.21799 1.20792 1.22856 1.02751 0.91809 0.98025 1.22431 1.00108 0.99084 0.80930 1.48548 1.63177 1.11886 1.11537 1.20141 0.77007 0.85150 0.86207 1.90687 1.51328 1.82523 1.16208 1.21175 1.01485 0.92528 0.98387 1.19663 0.93367 0.93282 1.00833 1.18883 0.92350 0.99131 0.93713 1.21017 0.96231 0.96943 0.96204 1.21147 0.93271 1.00332 0.99512 1.21130 0.99178 1.00232 0.93658 1.21070 0.96715 0.99982 0.96510 1.20933 0.92810 1.00438 0.99064 1.23150 1.03371 0.92033 1.01771 1.22974 0.99437 1.02481 0.94392 1.21979 1.00315 0.81209 0.96697 0.92690 0.90824 0.93564 0.96076 0.96135 0.78067 0.93547 0.90350 0.89311 0.91003 0.91385 0.88597 0.88728 0.85891 0.86301 0.86398 0.86264 0.86370 0.88423 0.88530 0.88515 0.88638 0.91635 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.28 37.16 0.31 -1.69 16 2 C -0.08 -1.21 0.62 -152.54 -0.09 -1.30 16 3 C 0.17 3.34 5.09 -4.04 -0.02 3.32 16 4 N -0.73 -17.75 5.16 -59.91 -0.31 -18.06 16 5 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 9 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C -0.12 -1.64 5.74 -24.45 -0.14 -1.78 16 14 C 0.10 1.09 6.37 -2.53 -0.02 1.07 16 15 N -0.62 -8.16 3.33 -170.53 -0.57 -8.73 16 16 C 0.53 7.05 7.66 -10.98 -0.08 6.97 16 17 O -0.53 -8.71 15.01 5.56 0.08 -8.63 16 18 C -0.10 -0.93 4.64 -27.88 -0.13 -1.06 16 19 C -0.07 -0.69 1.19 -155.66 -0.19 -0.88 16 20 C -0.04 -0.46 4.46 -104.62 -0.47 -0.92 16 21 C -0.09 -1.02 8.36 -39.58 -0.33 -1.35 16 22 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 24 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 25 C -0.11 -1.19 9.66 -39.59 -0.38 -1.57 16 26 C -0.17 -1.26 9.92 -26.70 -0.26 -1.52 16 27 C -0.16 -1.41 9.32 -26.70 -0.25 -1.65 16 28 C 0.12 1.79 6.04 -3.07 -0.02 1.77 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.29 6.69 -51.93 -0.35 0.94 16 31 H 0.05 0.60 7.43 -51.93 -0.39 0.22 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 34 H 0.38 9.66 6.22 -40.82 -0.25 9.41 16 35 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 36 H 0.08 1.19 8.02 -51.93 -0.42 0.78 16 37 H 0.09 1.29 8.04 -51.93 -0.42 0.87 16 38 H 0.07 0.66 7.29 -51.93 -0.38 0.28 16 39 H 0.07 0.68 7.71 -51.93 -0.40 0.28 16 40 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 41 H 0.09 0.81 7.54 -51.93 -0.39 0.42 16 42 H 0.12 1.47 7.05 -52.48 -0.37 1.10 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 48 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.10 0.87 7.17 -51.93 -0.37 0.50 16 50 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.07 0.97 7.84 -51.93 -0.41 0.57 16 52 H 0.07 1.08 7.82 -51.93 -0.41 0.67 16 LS Contribution 414.53 15.07 6.25 6.25 Total: -1.00 -32.09 414.53 -11.10 -43.19 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -8.74 Total: 8.46 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -3.51 Total: -12.82 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.15 Total: -53.70 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.09 -11.10 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699836286.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.303 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds