Wall clock time and date at job start Wed Apr 1 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46072 * 2 1 4 4 N 1.46503 * 109.46991 * 60.02153 * 3 2 1 5 5 C 1.34777 * 119.99648 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00425 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99676 * 180.02562 * 5 4 3 8 8 C 1.54350 * 110.82039 * 292.96221 * 7 5 4 9 9 C 1.51364 * 105.16857 * 215.42689 * 8 7 5 10 10 C 1.38499 * 130.38651 * 197.18955 * 9 8 7 11 11 C 1.38108 * 120.21308 * 180.02562 * 10 9 8 12 12 C 1.38253 * 119.93215 * 0.02562 * 11 10 9 13 13 C 1.38104 * 119.93839 * 359.97438 * 12 11 10 14 14 C 1.38219 * 109.76234 * 17.19452 * 9 8 7 15 15 C 1.51373 * 109.75480 * 359.97438 * 14 9 8 16 16 C 1.53046 * 109.44650 * 119.95911 * 2 1 3 17 17 C 1.53198 * 109.30936 * 58.65221 * 16 2 1 18 18 N 1.46924 * 108.77418 * 54.63592 * 17 16 2 19 19 C 1.36940 * 120.63427 * 126.41736 * 18 17 16 20 20 H 1.08007 * 119.99943 * 207.66615 * 19 18 17 21 21 C 1.38807 * 119.99856 * 27.65491 * 19 18 17 22 22 N 1.31621 * 120.00124 * 17.37078 * 21 19 18 23 23 Si 1.86797 * 120.00011 * 197.37275 * 21 19 18 24 24 H 1.48500 * 109.47256 * 60.00389 * 23 21 19 25 25 H 1.48507 * 109.47242 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47390 * 300.00197 * 23 21 19 27 27 C 1.46928 * 118.73900 * 306.38748 * 18 17 16 28 28 C 1.53040 * 109.46577 * 240.02416 * 2 1 3 29 29 H 1.09000 * 109.46578 * 60.00409 * 1 2 3 30 30 H 1.09002 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47419 * 300.00171 * 1 2 3 32 32 H 1.09001 * 109.47215 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46801 * 300.02301 * 3 2 1 34 34 H 0.97000 * 120.00213 * 359.97438 * 4 3 2 35 35 H 1.08995 * 110.73369 * 56.58972 * 7 5 4 36 36 H 1.08997 * 110.30330 * 334.35865 * 8 7 5 37 37 H 1.09001 * 110.29644 * 96.50309 * 8 7 5 38 38 H 1.07999 * 119.89293 * 0.02562 * 10 9 8 39 39 H 1.08000 * 120.02789 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.02808 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.88994 * 180.02562 * 13 12 11 42 42 H 1.08998 * 110.30121 * 223.88628 * 15 14 9 43 43 H 1.09004 * 110.38076 * 101.78034 * 15 14 9 44 44 H 1.08997 * 109.49880 * 178.59833 * 16 2 1 45 45 H 1.08994 * 109.50048 * 298.70101 * 16 2 1 46 46 H 1.09000 * 109.58632 * 294.84547 * 17 16 2 47 47 H 1.08995 * 109.58616 * 174.41605 * 17 16 2 48 48 H 0.97004 * 120.00074 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.59022 * 293.82261 * 27 18 17 50 50 H 1.08996 * 109.70639 * 173.46986 * 27 18 17 51 51 H 1.08999 * 109.49301 * 61.30918 * 28 2 1 52 52 H 1.08993 * 109.49798 * 181.41105 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 1.5517 2.1330 1.1965 5 6 1.8767 3.4235 1.4095 6 8 2.5736 4.0132 0.6110 7 6 1.3752 4.1335 2.6406 8 6 -0.1578 4.3056 2.5883 9 6 -0.4285 5.6445 3.2403 10 6 -1.6024 6.1729 3.7512 11 6 -1.6112 7.4370 4.3075 12 6 -0.4451 8.1782 4.3545 13 6 0.7264 7.6530 3.8456 14 6 0.7375 6.3852 3.2882 15 6 1.8717 5.5944 2.6722 16 6 2.0396 -0.7207 1.2503 17 6 1.4990 -2.1540 1.2645 18 7 1.8621 -2.8089 0.0004 19 6 2.5254 -4.0069 0.0006 20 1 3.1672 -4.2689 -0.8276 21 6 2.3730 -4.8845 1.0652 22 7 1.3597 -4.7446 1.8935 23 14 3.6060 -6.2639 1.3225 24 1 4.9594 -5.6868 1.5242 25 1 3.2214 -7.0549 2.5190 26 1 3.6173 -7.1469 0.1285 27 6 1.4994 -2.1543 -1.2640 28 6 2.0400 -0.7209 -1.2499 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1298 1.4428 -0.0005 33 1 1.6760 1.9565 -0.8898 34 1 0.9940 1.6615 1.8349 35 1 1.6779 3.6021 3.5427 36 1 -0.5027 4.3116 1.5544 37 1 -0.6472 3.5073 3.1463 38 1 -2.5137 5.5946 3.7144 39 1 -2.5284 7.8463 4.7046 40 1 -0.4504 9.1670 4.7888 41 1 1.6370 8.2325 3.8831 42 1 2.7678 5.6765 3.2873 43 1 2.0745 5.9464 1.6607 44 1 3.1292 -0.7430 1.2387 45 1 1.6954 -0.1933 2.1399 46 1 0.4140 -2.1344 1.3674 47 1 1.9374 -2.7017 2.0987 48 1 1.2530 -5.3581 2.6373 49 1 0.4145 -2.1346 -1.3673 50 1 1.9361 -2.7012 -2.0995 51 1 1.6961 -0.1936 -2.1397 52 1 3.1297 -0.7432 -1.2379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699865092.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:43 Heat of formation + Delta-G solvation = -4.912337 kcal Electronic energy + Delta-G solvation = -29867.891454 eV Core-core repulsion = 26024.713622 eV Total energy + Delta-G solvation = -3843.177832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 8.83 seconds Orbital eigenvalues (eV) -40.82188 -39.57362 -38.44518 -35.69135 -35.05811 -33.16576 -31.69069 -30.97107 -29.95787 -29.62859 -27.58821 -27.12261 -26.68505 -24.34612 -23.30742 -22.32843 -21.62613 -21.19202 -20.70507 -19.97487 -18.05933 -17.51516 -16.52104 -16.42190 -16.12645 -15.88249 -15.17217 -14.93880 -14.89627 -14.61870 -14.00331 -13.92938 -13.59693 -13.51226 -13.47375 -13.36775 -13.16500 -12.95591 -12.86951 -12.64255 -12.43719 -11.99879 -11.54212 -11.49314 -11.46082 -11.40760 -11.31196 -11.19398 -11.06040 -10.77498 -10.71738 -10.55347 -10.22674 -10.21427 -9.88671 -9.81046 -9.51751 -9.43230 -9.07977 -8.97524 -8.76765 -8.45481 -6.66731 -5.80279 -3.21476 1.07566 1.11811 2.58355 3.17390 3.37411 3.43171 3.44826 3.48107 4.02426 4.24406 4.48871 4.64624 4.69615 4.72989 4.77254 4.93213 5.01106 5.12391 5.15567 5.21754 5.24149 5.31608 5.39558 5.44515 5.47509 5.50703 5.56516 5.75510 5.77307 5.83569 5.84792 5.92834 5.94071 6.06968 6.09438 6.12750 6.16549 6.23431 6.29711 6.37575 6.42825 6.46633 6.54675 6.59584 6.68248 6.72529 6.76940 6.85993 6.98491 7.34700 7.52387 7.64842 7.78556 8.20416 8.44147 9.20752 9.84414 10.40847 11.28132 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020860 B = 0.002078 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.974813 B =13472.195882 C =13819.292152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C 0.129 3.871 4 N -0.719 5.719 5 C 0.520 3.480 6 O -0.543 6.543 7 C -0.112 4.112 8 C -0.071 4.071 9 C -0.097 4.097 10 C -0.105 4.105 11 C -0.123 4.123 12 C -0.120 4.120 13 C -0.108 4.108 14 C -0.091 4.091 15 C -0.068 4.068 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.146 3.854 28 C -0.120 4.120 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.402 0.598 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.021 0.979 47 H 0.085 0.915 48 H 0.254 0.746 49 H 0.020 0.980 50 H 0.052 0.948 51 H 0.052 0.948 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 22.644 4.219 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C 0.006 3.994 4 N -0.370 5.370 5 C 0.306 3.694 6 O -0.421 6.421 7 C -0.133 4.133 8 C -0.108 4.108 9 C -0.097 4.097 10 C -0.123 4.123 11 C -0.141 4.141 12 C -0.138 4.138 13 C -0.126 4.126 14 C -0.091 4.091 15 C -0.105 4.105 16 C -0.169 4.169 17 C 0.045 3.955 18 N -0.314 5.314 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.019 3.981 28 C -0.160 4.160 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.238 0.762 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.104 0.896 48 H 0.064 0.936 49 H 0.038 0.962 50 H 0.071 0.929 51 H 0.070 0.930 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.726 22.912 3.766 23.696 hybrid contribution 0.308 -0.930 0.591 1.144 sum -4.418 21.982 4.357 22.841 Atomic orbital electron populations 1.21938 0.94725 1.03012 1.00209 1.20693 0.95737 0.92048 0.97923 1.21556 0.99013 0.92276 0.86600 1.46106 1.53252 1.11618 1.26042 1.20263 0.80210 0.81924 0.87034 1.90686 1.38172 1.66161 1.47081 1.21997 0.96428 0.97149 0.97721 1.20976 0.93711 0.94733 1.01393 1.20504 0.93802 0.96424 0.98931 1.20636 0.97134 0.95791 0.98718 1.21036 0.98298 0.94525 1.00249 1.21043 0.92699 0.99870 1.00215 1.20626 0.98431 0.94612 0.98933 1.20620 0.95834 0.94545 0.98117 1.20939 0.95978 0.91133 1.02487 1.22252 1.00657 0.99558 0.94419 1.20795 0.96486 0.87812 0.90379 1.44021 1.66809 1.21078 0.99458 1.19146 1.19279 0.93504 1.06135 0.91804 1.25013 0.97140 0.97556 0.99991 1.70018 1.27904 1.38892 1.17995 0.86387 0.81316 0.81841 0.77323 1.21085 1.21677 1.20920 1.20907 0.96392 0.90625 0.90127 1.21999 1.00767 0.98176 0.95052 0.93442 0.90726 0.93699 0.91706 0.91959 0.76206 0.87378 0.89596 0.89656 0.86120 0.85916 0.85941 0.86176 0.90211 0.88193 0.92561 0.93698 0.96110 0.89645 0.93647 0.96179 0.92937 0.92960 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.54 37.16 0.28 -1.72 16 2 C -0.06 -0.95 0.53 -154.46 -0.08 -1.03 16 3 C 0.13 1.78 4.56 -4.04 -0.02 1.76 16 4 N -0.72 -8.61 4.95 -60.29 -0.30 -8.91 16 5 C 0.52 6.56 7.04 -10.98 -0.08 6.48 16 6 O -0.54 -8.83 15.50 5.56 0.09 -8.74 16 7 C -0.11 -1.08 3.47 -90.37 -0.31 -1.39 16 8 C -0.07 -0.62 6.31 -26.85 -0.17 -0.79 16 9 C -0.10 -0.93 6.14 -104.21 -0.64 -1.57 16 10 C -0.10 -0.90 10.04 -39.53 -0.40 -1.30 16 11 C -0.12 -0.97 10.05 -39.62 -0.40 -1.37 16 12 C -0.12 -0.95 10.05 -39.62 -0.40 -1.35 16 13 C -0.11 -0.95 10.04 -39.54 -0.40 -1.35 16 14 C -0.09 -0.90 6.14 -104.21 -0.64 -1.54 16 15 C -0.07 -0.68 6.10 -26.86 -0.16 -0.85 16 16 C -0.13 -2.25 4.75 -26.61 -0.13 -2.38 16 17 C 0.17 3.81 4.84 -3.71 -0.02 3.80 16 18 N -0.59 -14.16 2.99 -172.32 -0.52 -14.67 16 19 C -0.25 -6.74 9.59 -15.06 -0.14 -6.88 16 20 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 21 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 22 N -0.90 -25.58 11.19 55.49 0.62 -24.96 16 23 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.15 2.91 6.04 -3.71 -0.02 2.89 16 28 C -0.12 -1.97 4.91 -26.61 -0.13 -2.10 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.25 4.98 -51.93 -0.26 0.99 16 31 H 0.04 0.55 6.86 -51.93 -0.36 0.19 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.40 4.21 6.16 -40.82 -0.25 3.96 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.80 7.89 -51.93 -0.41 0.39 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 1.17 6.98 -51.93 -0.36 0.80 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.04 0.68 6.82 -51.93 -0.35 0.32 16 46 H 0.02 0.48 6.69 -51.93 -0.35 0.13 16 47 H 0.09 2.19 6.04 -51.93 -0.31 1.88 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.02 0.40 6.69 -51.93 -0.35 0.06 16 50 H 0.05 1.05 7.94 -51.93 -0.41 0.63 16 51 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -30.84 397.33 -11.55 -42.39 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.46 Total: 3.24 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -3.94 Total: -10.75 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.19 Total: -48.55 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.84 -11.55 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699865092.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.475 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.83 seconds