Wall clock time and date at job start Wed Apr 1 2020 02:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46072 * 2 1 4 4 N 1.46503 * 109.46991 * 60.02153 * 3 2 1 5 5 C 1.34777 * 119.99648 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00425 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99676 * 180.02562 * 5 4 3 8 8 C 1.54350 * 110.82039 * 292.96221 * 7 5 4 9 9 C 1.51364 * 105.16857 * 215.42689 * 8 7 5 10 10 C 1.38499 * 130.38651 * 197.18955 * 9 8 7 11 11 C 1.38108 * 120.21308 * 180.02562 * 10 9 8 12 12 C 1.38253 * 119.93215 * 0.02562 * 11 10 9 13 13 C 1.38104 * 119.93839 * 359.97438 * 12 11 10 14 14 C 1.38219 * 109.76234 * 17.19452 * 9 8 7 15 15 C 1.51373 * 109.75480 * 359.97438 * 14 9 8 16 16 C 1.53046 * 109.44650 * 119.95911 * 2 1 3 17 17 C 1.53198 * 109.30936 * 58.65221 * 16 2 1 18 18 N 1.46924 * 108.77418 * 54.63592 * 17 16 2 19 19 C 1.36940 * 120.63427 * 126.41736 * 18 17 16 20 20 H 1.08007 * 119.99943 * 207.66615 * 19 18 17 21 21 C 1.38807 * 119.99856 * 27.65491 * 19 18 17 22 22 N 1.31621 * 120.00124 * 17.37078 * 21 19 18 23 23 Si 1.86797 * 120.00011 * 197.37275 * 21 19 18 24 24 H 1.48500 * 109.47256 * 60.00389 * 23 21 19 25 25 H 1.48507 * 109.47242 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47390 * 300.00197 * 23 21 19 27 27 C 1.46928 * 118.73900 * 306.38748 * 18 17 16 28 28 C 1.53040 * 109.46577 * 240.02416 * 2 1 3 29 29 H 1.09000 * 109.46578 * 60.00409 * 1 2 3 30 30 H 1.09002 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47419 * 300.00171 * 1 2 3 32 32 H 1.09001 * 109.47215 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46801 * 300.02301 * 3 2 1 34 34 H 0.97000 * 120.00213 * 359.97438 * 4 3 2 35 35 H 1.08995 * 110.73369 * 56.58972 * 7 5 4 36 36 H 1.08997 * 110.30330 * 334.35865 * 8 7 5 37 37 H 1.09001 * 110.29644 * 96.50309 * 8 7 5 38 38 H 1.07999 * 119.89293 * 0.02562 * 10 9 8 39 39 H 1.08000 * 120.02789 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.02808 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.88994 * 180.02562 * 13 12 11 42 42 H 1.08998 * 110.30121 * 223.88628 * 15 14 9 43 43 H 1.09004 * 110.38076 * 101.78034 * 15 14 9 44 44 H 1.08997 * 109.49880 * 178.59833 * 16 2 1 45 45 H 1.08994 * 109.50048 * 298.70101 * 16 2 1 46 46 H 1.09000 * 109.58632 * 294.84547 * 17 16 2 47 47 H 1.08995 * 109.58616 * 174.41605 * 17 16 2 48 48 H 0.97004 * 120.00074 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.59022 * 293.82261 * 27 18 17 50 50 H 1.08996 * 109.70639 * 173.46986 * 27 18 17 51 51 H 1.08999 * 109.49301 * 61.30918 * 28 2 1 52 52 H 1.08993 * 109.49798 * 181.41105 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 1.5517 2.1330 1.1965 5 6 1.8767 3.4235 1.4095 6 8 2.5736 4.0132 0.6110 7 6 1.3752 4.1335 2.6406 8 6 -0.1578 4.3056 2.5883 9 6 -0.4285 5.6445 3.2403 10 6 -1.6024 6.1729 3.7512 11 6 -1.6112 7.4370 4.3075 12 6 -0.4451 8.1782 4.3545 13 6 0.7264 7.6530 3.8456 14 6 0.7375 6.3852 3.2882 15 6 1.8717 5.5944 2.6722 16 6 2.0396 -0.7207 1.2503 17 6 1.4990 -2.1540 1.2645 18 7 1.8621 -2.8089 0.0004 19 6 2.5254 -4.0069 0.0006 20 1 3.1672 -4.2689 -0.8276 21 6 2.3730 -4.8845 1.0652 22 7 1.3597 -4.7446 1.8935 23 14 3.6060 -6.2639 1.3225 24 1 4.9594 -5.6868 1.5242 25 1 3.2214 -7.0549 2.5190 26 1 3.6173 -7.1469 0.1285 27 6 1.4994 -2.1543 -1.2640 28 6 2.0400 -0.7209 -1.2499 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1298 1.4428 -0.0005 33 1 1.6760 1.9565 -0.8898 34 1 0.9940 1.6615 1.8349 35 1 1.6779 3.6021 3.5427 36 1 -0.5027 4.3116 1.5544 37 1 -0.6472 3.5073 3.1463 38 1 -2.5137 5.5946 3.7144 39 1 -2.5284 7.8463 4.7046 40 1 -0.4504 9.1670 4.7888 41 1 1.6370 8.2325 3.8831 42 1 2.7678 5.6765 3.2873 43 1 2.0745 5.9464 1.6607 44 1 3.1292 -0.7430 1.2387 45 1 1.6954 -0.1933 2.1399 46 1 0.4140 -2.1344 1.3674 47 1 1.9374 -2.7017 2.0987 48 1 1.2530 -5.3581 2.6373 49 1 0.4145 -2.1346 -1.3673 50 1 1.9361 -2.7012 -2.0995 51 1 1.6961 -0.1936 -2.1397 52 1 3.1297 -0.7432 -1.2379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699865092.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:36 Heat of formation + Delta-G solvation = -20.503551 kcal Electronic energy + Delta-G solvation = -29868.567540 eV Core-core repulsion = 26024.713622 eV Total energy + Delta-G solvation = -3843.853918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.83 seconds Orbital eigenvalues (eV) -41.65904 -40.60709 -39.67045 -36.68047 -36.29565 -34.65739 -32.70648 -32.29670 -31.56344 -30.43449 -28.66069 -28.26696 -27.82096 -25.90284 -24.37944 -23.80654 -22.54418 -22.14516 -21.79209 -20.93852 -19.61500 -18.56180 -18.07239 -17.16621 -16.99269 -16.85759 -16.74603 -16.08878 -15.82120 -15.73582 -15.45137 -15.30978 -15.01281 -14.87012 -14.45354 -14.27324 -14.12229 -13.98137 -13.88206 -13.69510 -13.44603 -13.21176 -13.11147 -12.92984 -12.65862 -12.53858 -12.36810 -12.25844 -12.17578 -12.14265 -12.09063 -11.89851 -11.78045 -11.66468 -11.44237 -11.16055 -11.03557 -10.82893 -10.46954 -10.05132 -9.70209 -9.41767 -8.61495 -7.85233 -5.28337 0.44497 0.49297 1.46530 1.48541 1.55011 1.60352 2.19474 2.52358 2.85429 3.28378 3.31719 3.49606 3.74032 3.81324 3.88054 3.89794 3.98116 4.03490 4.14506 4.18964 4.31836 4.33689 4.44037 4.54092 4.63711 4.65085 4.69018 4.73321 4.74656 4.79872 4.85987 4.86257 4.88051 4.90962 4.97834 5.06909 5.09645 5.15941 5.19065 5.24999 5.29625 5.33845 5.42531 5.46411 5.52883 5.56182 5.58293 5.63744 5.68828 5.72808 5.87765 6.13032 6.42211 6.55447 7.18975 7.22937 7.91865 8.41786 9.20174 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020860 B = 0.002078 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.974813 B =13472.195882 C =13819.292152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.053 4.053 3 C 0.141 3.859 4 N -0.711 5.711 5 C 0.522 3.478 6 O -0.582 6.582 7 C -0.105 4.105 8 C -0.066 4.066 9 C -0.111 4.111 10 C -0.115 4.115 11 C -0.127 4.127 12 C -0.125 4.125 13 C -0.120 4.120 14 C -0.110 4.110 15 C -0.067 4.067 16 C -0.116 4.116 17 C 0.178 3.822 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.061 0.939 21 C -0.050 4.050 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.281 1.281 25 H -0.294 1.294 26 H -0.277 1.277 27 C 0.143 3.857 28 C -0.113 4.113 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.412 0.588 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.009 0.991 47 H 0.047 0.953 48 H 0.249 0.751 49 H 0.023 0.977 50 H 0.046 0.954 51 H 0.081 0.919 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 24.352 4.692 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.054 4.054 3 C 0.017 3.983 4 N -0.363 5.363 5 C 0.310 3.690 6 O -0.462 6.462 7 C -0.126 4.126 8 C -0.103 4.103 9 C -0.111 4.111 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.138 4.138 14 C -0.110 4.110 15 C -0.104 4.104 16 C -0.155 4.155 17 C 0.053 3.947 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.079 0.921 21 C -0.245 4.245 22 N -0.577 5.577 23 Si 0.790 3.210 24 H -0.208 1.208 25 H -0.220 1.220 26 H -0.203 1.203 27 C 0.017 3.983 28 C -0.152 4.152 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.250 0.750 35 H 0.145 0.855 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.027 0.973 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.040 0.960 50 H 0.065 0.935 51 H 0.099 0.901 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.527 24.629 4.231 25.594 hybrid contribution 0.518 -1.413 0.410 1.560 sum -5.009 23.217 4.642 24.200 Atomic orbital electron populations 1.21868 0.93491 1.01741 1.02227 1.20553 0.96529 0.92395 0.95874 1.21292 0.98229 0.91190 0.87634 1.46007 1.53080 1.11516 1.25668 1.20706 0.79308 0.81725 0.87306 1.90675 1.39961 1.66982 1.48615 1.21987 0.97212 0.96647 0.96764 1.20957 0.92786 0.95205 1.01338 1.20679 0.94134 0.96791 0.99464 1.20915 0.97432 0.96373 0.98555 1.21389 0.99220 0.94280 0.99581 1.21370 0.92358 1.00843 0.99728 1.20886 0.99457 0.94524 0.98959 1.20712 0.95899 0.95276 0.99146 1.20870 0.96589 0.91530 1.01398 1.22052 0.99513 0.96929 0.97056 1.20608 0.95512 0.89978 0.88618 1.44286 1.66936 1.20824 1.01275 1.19440 1.19202 0.94546 1.05980 0.92121 1.25698 0.98742 0.99945 1.00134 1.70158 1.29377 1.39780 1.18404 0.85432 0.79221 0.79312 0.77021 1.20780 1.21965 1.20328 1.21038 0.96585 0.92404 0.88246 1.21889 1.00093 0.96131 0.97107 0.91686 0.93519 0.91549 0.92964 0.91394 0.75043 0.85513 0.90180 0.87682 0.84580 0.83692 0.83780 0.85158 0.89728 0.90348 0.94043 0.91070 0.97327 0.93475 0.94176 0.95956 0.93516 0.90072 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 7.54 71.98 0.54 -2.97 16 2 C -0.05 -1.50 0.53 -52.15 -0.03 -1.52 16 3 C 0.14 3.57 4.56 86.38 0.39 3.97 16 4 N -0.71 -15.39 4.95 -463.04 -2.29 -17.68 16 5 C 0.52 12.37 7.04 87.66 0.62 12.99 16 6 O -0.58 -18.55 15.50 -3.04 -0.05 -18.60 16 7 C -0.11 -1.86 3.47 -10.63 -0.04 -1.89 16 8 C -0.07 -1.01 6.31 30.52 0.19 -0.82 16 9 C -0.11 -1.94 6.14 -19.60 -0.12 -2.06 16 10 C -0.11 -1.74 10.04 22.30 0.22 -1.51 16 11 C -0.13 -1.70 10.05 22.24 0.22 -1.48 16 12 C -0.13 -1.72 10.05 22.24 0.22 -1.50 16 13 C -0.12 -1.97 10.04 22.30 0.22 -1.75 16 14 C -0.11 -2.07 6.14 -19.59 -0.12 -2.19 16 15 C -0.07 -1.30 6.10 30.51 0.19 -1.11 16 16 C -0.12 -3.95 4.75 30.68 0.15 -3.80 16 17 C 0.18 8.08 4.84 86.36 0.42 8.49 16 18 N -0.61 -29.64 2.99 -699.09 -2.09 -31.74 16 19 C -0.26 -14.27 9.59 84.03 0.81 -13.46 16 20 H 0.06 3.27 7.89 -2.91 -0.02 3.25 16 21 C -0.05 -2.75 4.91 84.86 0.42 -2.34 16 22 N -0.93 -54.05 11.19 21.65 0.24 -53.81 16 23 Si 0.96 44.79 29.59 68.60 2.03 46.82 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 27 C 0.14 5.65 6.04 86.36 0.52 6.18 16 28 C -0.11 -3.54 4.91 30.67 0.15 -3.39 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.49 4.98 -2.39 -0.01 1.48 16 31 H 0.07 1.42 6.86 -2.39 -0.02 1.40 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.41 7.35 6.16 -92.71 -0.57 6.78 16 35 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.33 7.89 -2.39 -0.02 1.31 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.86 6.98 -2.38 -0.02 1.84 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 2.02 6.82 -2.39 -0.02 2.00 16 46 H 0.01 0.41 6.69 -2.39 -0.02 0.39 16 47 H 0.05 2.49 6.04 -2.39 -0.01 2.48 16 48 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 49 H 0.02 0.89 6.69 -2.39 -0.02 0.87 16 50 H 0.05 1.86 7.94 -2.39 -0.02 1.84 16 51 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.39 397.33 3.16 -65.22 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.34 Total: 19.94 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.98 Total: -10.15 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -4.14 Total: -103.23 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.05 Total: -18.60 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -68.39 3.16 -65.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699865092.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.718 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.83 seconds