Wall clock time and date at job start Wed Apr 1 2020 02:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.49520 * 2 1 4 4 N 1.46493 * 109.47468 * 59.99707 * 3 2 1 5 5 C 1.34769 * 120.00303 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00015 * 355.01026 * 5 4 3 7 7 C 1.50703 * 120.00285 * 175.01116 * 5 4 3 8 8 C 1.50705 * 115.54947 * 271.00523 * 7 5 4 9 9 C 1.38227 * 120.00159 * 148.60022 * 8 7 5 10 10 C 1.38236 * 120.00239 * 179.76859 * 9 8 7 11 11 C 1.38243 * 119.99604 * 0.49796 * 10 9 8 12 12 C 1.38232 * 119.99762 * 359.75192 * 11 10 9 13 13 C 1.38228 * 120.00398 * 0.02562 * 12 11 10 14 14 C 1.52993 * 117.49956 * 125.29627 * 7 5 4 15 15 C 1.52995 * 117.49914 * 56.67136 * 7 5 4 16 16 C 1.53032 * 109.49951 * 239.93377 * 2 1 3 17 17 C 1.53035 * 109.54142 * 301.34479 * 16 2 1 18 18 C 1.53194 * 109.33989 * 298.68708 * 17 16 2 19 19 N 1.46929 * 108.77437 * 54.61513 * 18 17 16 20 20 C 1.36937 * 120.62735 * 126.41613 * 19 18 17 21 21 H 1.08004 * 119.99776 * 207.58440 * 20 19 18 22 22 C 1.38813 * 120.00532 * 27.58034 * 20 19 18 23 23 N 1.31626 * 119.99542 * 17.29140 * 22 20 19 24 24 Si 1.86792 * 120.00409 * 197.28568 * 22 20 19 25 25 H 1.48502 * 109.47002 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47273 * 120.00015 * 24 22 20 27 27 H 1.48502 * 109.47343 * 240.00088 * 24 22 20 28 28 C 1.46924 * 118.74050 * 306.39135 * 19 18 17 29 29 H 1.08998 * 109.47237 * 60.00215 * 1 2 3 30 30 H 1.08998 * 109.46975 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47165 * 300.00210 * 1 2 3 32 32 H 1.08999 * 109.46616 * 299.99785 * 3 2 1 33 33 H 1.09000 * 109.47132 * 180.02562 * 3 2 1 34 34 H 0.97005 * 119.99704 * 359.72906 * 4 3 2 35 35 H 1.08000 * 119.99800 * 359.97438 * 9 8 7 36 36 H 1.07994 * 120.00235 * 180.23158 * 10 9 8 37 37 H 1.08003 * 119.99851 * 179.72783 * 11 10 9 38 38 H 1.08008 * 119.99463 * 179.97438 * 12 11 10 39 39 H 1.08004 * 120.00435 * 179.97438 * 13 12 11 40 40 H 1.08997 * 117.49921 * 359.97438 * 14 7 5 41 41 H 1.09006 * 117.49948 * 145.02027 * 14 7 5 42 42 H 1.09002 * 117.49974 * 214.97904 * 15 7 5 43 43 H 1.08996 * 117.50108 * 359.97438 * 15 7 5 44 44 H 1.09004 * 109.46239 * 61.40313 * 16 2 1 45 45 H 1.09007 * 109.45950 * 181.36000 * 16 2 1 46 46 H 1.08993 * 109.50299 * 178.71268 * 17 16 2 47 47 H 1.09006 * 109.47077 * 58.63232 * 17 16 2 48 48 H 1.08993 * 109.58741 * 294.82581 * 18 17 16 49 49 H 1.09005 * 109.70312 * 174.47102 * 18 17 16 50 50 H 0.96994 * 119.99496 * 180.02562 * 23 22 20 51 51 H 1.08996 * 109.58400 * 293.82290 * 28 19 18 52 52 H 1.08995 * 109.70423 * 173.46716 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4424 0.0000 4 7 1.5526 2.1332 1.1960 5 6 1.8791 3.4232 1.4096 6 8 2.6495 3.9857 0.6606 7 6 1.2870 4.1668 2.5790 8 6 -0.0237 4.8608 2.3117 9 6 -0.9526 4.9983 3.3261 10 6 -2.1529 5.6391 3.0822 11 6 -2.4286 6.1334 1.8209 12 6 -1.5019 5.9914 0.8052 13 6 -0.2997 5.3547 1.0503 14 6 2.2567 4.8386 3.5532 15 6 1.5019 3.5760 3.9738 16 6 2.0408 -0.7227 -1.2484 17 6 1.5045 -2.1559 -1.2657 18 6 2.0155 -2.9037 -0.0302 19 7 1.6522 -2.1378 1.1700 20 6 0.9646 -2.7313 2.1947 21 1 0.3272 -2.1371 2.8328 22 6 1.0867 -4.0967 2.4135 23 7 2.0922 -4.7607 1.8838 24 14 -0.1758 -4.9916 3.4595 25 1 -1.1993 -4.0260 3.9342 26 1 -0.8316 -6.0483 2.6480 27 1 0.4994 -5.6121 4.6276 28 6 2.0413 -0.7233 1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6775 1.9563 -0.8900 33 1 3.1306 1.4419 -0.0005 34 1 0.9914 1.6632 1.8326 35 1 -0.7391 4.6079 4.3102 36 1 -2.8770 5.7498 3.8757 37 1 -3.3682 6.6302 1.6292 38 1 -1.7175 6.3772 -0.1803 39 1 0.4242 5.2433 0.2566 40 1 3.3230 4.7424 3.3486 41 1 1.9469 5.7829 4.0009 42 1 0.6954 3.6897 4.6983 43 1 2.0711 2.6493 4.0457 44 1 1.6983 -0.1955 -2.1389 45 1 3.1306 -0.7435 -1.2357 46 1 1.8499 -2.6629 -2.1665 47 1 0.4147 -2.1362 -1.2540 48 1 3.0994 -3.0035 -0.0858 49 1 1.5594 -3.8927 0.0156 50 1 2.1773 -5.7148 2.0363 51 1 3.1273 -0.6453 1.2986 52 1 1.6022 -0.2711 2.1391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699878790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:23 Heat of formation + Delta-G solvation = 28.335171 kcal Electronic energy + Delta-G solvation = -30733.819393 eV Core-core repulsion = 26892.083280 eV Total energy + Delta-G solvation = -3841.736112 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.67173 -39.21559 -38.32464 -36.55072 -34.91970 -33.15744 -31.17967 -30.81480 -30.74776 -30.48749 -26.87235 -26.03133 -25.33275 -24.34942 -23.06509 -22.45978 -22.14657 -21.68443 -20.58060 -19.66333 -18.07932 -17.59101 -16.86687 -16.55167 -15.82476 -15.52021 -15.08700 -15.00923 -14.78768 -14.62760 -14.26119 -13.88389 -13.76917 -13.72151 -13.38130 -13.16507 -13.04995 -12.87052 -12.71272 -12.23419 -12.19569 -11.91376 -11.72076 -11.56098 -11.31580 -11.28997 -11.00748 -10.94780 -10.90613 -10.78192 -10.61563 -10.46396 -10.21741 -10.10001 -9.90209 -9.76318 -9.52091 -9.37237 -9.11297 -8.89998 -8.78842 -8.47944 -6.68827 -5.81258 -3.23470 1.09848 1.21314 2.61868 3.13044 3.34240 3.36708 3.42685 3.44043 3.80387 4.25775 4.45671 4.54580 4.61501 4.72977 4.81455 4.87787 4.97436 5.05508 5.20697 5.23391 5.30540 5.38240 5.40405 5.43649 5.49581 5.59202 5.66984 5.79096 5.80360 5.83637 5.86628 5.88994 5.95301 6.03772 6.13484 6.20208 6.27429 6.32862 6.36276 6.39695 6.45191 6.56390 6.57944 6.63746 6.75866 6.78800 6.81719 6.88831 6.97554 7.38841 7.60971 7.66381 7.76950 8.27192 8.41852 9.18513 9.82184 10.38947 11.26855 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012142 B = 0.003035 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.406032 B = 9224.352003 C = 9954.619994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C 0.132 3.868 4 N -0.713 5.713 5 C 0.553 3.447 6 O -0.541 6.541 7 C -0.121 4.121 8 C -0.036 4.036 9 C -0.116 4.116 10 C -0.118 4.118 11 C -0.123 4.123 12 C -0.116 4.116 13 C -0.108 4.108 14 C -0.134 4.134 15 C -0.163 4.163 16 C -0.094 4.094 17 C -0.143 4.143 18 C 0.169 3.831 19 N -0.587 5.587 20 C -0.250 4.250 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.899 3.101 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.161 3.839 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.405 0.595 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.016 0.984 49 H 0.087 0.913 50 H 0.253 0.747 51 H 0.017 0.983 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.675 19.213 0.045 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.094 4.094 3 C 0.009 3.991 4 N -0.364 5.364 5 C 0.337 3.663 6 O -0.418 6.418 7 C -0.124 4.124 8 C -0.037 4.037 9 C -0.134 4.134 10 C -0.136 4.136 11 C -0.141 4.141 12 C -0.134 4.134 13 C -0.126 4.126 14 C -0.172 4.172 15 C -0.200 4.200 16 C -0.133 4.133 17 C -0.182 4.182 18 C 0.043 3.957 19 N -0.309 5.309 20 C -0.380 4.380 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.545 5.545 24 Si 0.729 3.271 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.034 3.966 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.241 0.759 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.034 0.966 49 H 0.105 0.895 50 H 0.063 0.937 51 H 0.035 0.965 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.090 19.404 -0.480 20.066 hybrid contribution -0.867 -0.790 0.740 1.387 sum -5.957 18.614 0.259 19.546 Atomic orbital electron populations 1.21761 0.94231 1.03062 0.99608 1.21332 0.96582 0.92221 0.99235 1.21475 0.99034 0.92121 0.86507 1.46064 1.52845 1.11485 1.25988 1.19249 0.80573 0.81715 0.84713 1.90686 1.35163 1.68162 1.47792 1.20108 0.96629 1.04319 0.91377 1.18683 0.92626 0.98180 0.94161 1.21032 0.93662 0.99631 0.99063 1.21107 0.96882 0.98445 0.97130 1.21173 0.99381 1.00244 0.93340 1.21136 0.93813 0.99181 0.99280 1.21094 0.97247 0.97632 0.96580 1.23045 0.97809 0.97245 0.99063 1.23287 1.03467 0.98592 0.94676 1.21353 0.99953 0.96569 0.95376 1.22222 1.00814 0.95207 1.00004 1.20803 0.96627 0.95660 0.82594 1.43989 1.65157 1.05186 1.16570 1.19181 1.18806 0.91514 1.08507 0.91734 1.25017 0.97184 0.98095 0.99301 1.70050 1.28411 1.08059 1.48022 0.86271 0.81248 0.79799 0.79737 1.20283 1.21599 1.21784 1.20861 0.95999 0.86482 0.93280 0.94165 0.90471 0.93865 0.92043 0.91585 0.75917 0.85612 0.85911 0.86105 0.85969 0.85781 0.87722 0.87730 0.87351 0.87395 0.93452 0.92574 0.93330 0.92296 0.96570 0.89468 0.93706 0.96488 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 7.81 37.16 0.29 -1.76 16 2 C -0.09 -1.47 0.53 -154.39 -0.08 -1.56 16 3 C 0.13 1.96 4.57 -4.04 -0.02 1.94 16 4 N -0.71 -9.87 4.99 -60.30 -0.30 -10.17 16 5 C 0.55 7.94 5.91 -10.99 -0.06 7.87 16 6 O -0.54 -9.48 16.79 5.56 0.09 -9.39 16 7 C -0.12 -1.41 2.32 -156.81 -0.36 -1.77 16 8 C -0.04 -0.41 5.47 -104.62 -0.57 -0.98 16 9 C -0.12 -1.13 9.37 -39.59 -0.37 -1.50 16 10 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 11 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 12 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 13 C -0.11 -1.28 9.32 -39.58 -0.37 -1.64 16 14 C -0.13 -1.34 9.91 -26.74 -0.26 -1.60 16 15 C -0.16 -1.54 9.57 -26.73 -0.26 -1.80 16 16 C -0.09 -1.54 4.71 -26.70 -0.13 -1.66 16 17 C -0.14 -2.63 5.74 -26.61 -0.15 -2.78 16 18 C 0.17 3.89 5.32 -3.71 -0.02 3.87 16 19 N -0.59 -13.85 2.43 -172.32 -0.42 -14.27 16 20 C -0.25 -6.54 9.59 -15.06 -0.14 -6.68 16 21 H 0.06 1.65 7.89 -52.48 -0.41 1.24 16 22 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 23 N -0.90 -25.55 11.17 55.49 0.62 -24.93 16 24 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.16 3.15 4.93 -3.71 -0.02 3.13 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.41 5.97 -51.93 -0.31 1.10 16 31 H 0.04 0.65 6.86 -51.93 -0.36 0.29 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 5.34 6.22 -40.82 -0.25 5.08 16 35 H 0.13 0.99 5.94 -52.49 -0.31 0.68 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.12 1.62 7.14 -52.48 -0.37 1.24 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.11 0.83 6.09 -51.93 -0.32 0.52 16 43 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.09 6.34 -51.93 -0.33 0.76 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.27 6.02 -51.93 -0.31 1.95 16 50 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 51 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.05 0.93 6.84 -51.93 -0.36 0.57 16 LS Contribution 403.77 15.07 6.08 6.08 Total: -1.00 -30.31 403.77 -11.15 -41.46 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.39 Total: 6.59 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -3.81 Total: -11.46 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.10 Total: -49.37 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.31 -11.15 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699878790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.792 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds