Wall clock time and date at job start Wed Apr 1 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.49592 * 2 1 4 4 N 1.46498 * 109.47069 * 299.99742 * 3 2 1 5 5 C 1.34777 * 120.00087 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99751 * 5.24480 * 5 4 3 7 7 C 1.50699 * 120.00045 * 185.23903 * 5 4 3 8 8 C 1.50703 * 115.55046 * 65.97085 * 7 5 4 9 9 C 1.38244 * 119.99728 * 30.64515 * 8 7 5 10 10 C 1.38228 * 119.99653 * 179.97438 * 9 8 7 11 11 C 1.38230 * 120.00615 * 0.26438 * 10 9 8 12 12 C 1.38243 * 119.99712 * 359.46099 * 11 10 9 13 13 C 1.38231 * 120.00207 * 210.62931 * 8 7 5 14 14 C 1.53001 * 117.50140 * 211.64070 * 7 5 4 15 15 C 1.53001 * 117.50193 * 280.30073 * 7 5 4 16 16 C 1.53037 * 109.49701 * 120.06191 * 2 1 3 17 17 C 1.53048 * 109.53815 * 58.65581 * 16 2 1 18 18 C 1.53186 * 109.34042 * 61.31637 * 17 16 2 19 19 N 1.46930 * 108.77545 * 305.38149 * 18 17 16 20 20 C 1.36937 * 120.63154 * 233.63347 * 19 18 17 21 21 H 1.07996 * 120.00095 * 147.72136 * 20 19 18 22 22 C 1.38807 * 119.99903 * 327.72048 * 20 19 18 23 23 N 1.31616 * 120.00376 * 167.79056 * 22 20 19 24 24 Si 1.86807 * 119.99996 * 347.78935 * 22 20 19 25 25 H 1.48504 * 109.47199 * 85.93304 * 24 22 20 26 26 H 1.48496 * 109.47060 * 205.93096 * 24 22 20 27 27 H 1.48497 * 109.46794 * 325.93054 * 24 22 20 28 28 C 1.46928 * 118.73983 * 53.60817 * 19 18 17 29 29 H 1.09002 * 109.47386 * 60.00616 * 1 2 3 30 30 H 1.09007 * 109.46823 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47470 * 300.00062 * 1 2 3 32 32 H 1.09000 * 109.47032 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46948 * 59.99908 * 3 2 1 34 34 H 0.97007 * 120.00249 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.00063 * 359.97438 * 9 8 7 36 36 H 1.08003 * 119.99509 * 179.97438 * 10 9 8 37 37 H 1.08004 * 120.00737 * 179.72177 * 11 10 9 38 38 H 1.07997 * 120.00280 * 180.30349 * 12 11 10 39 39 H 1.08003 * 120.00085 * 359.97286 * 13 8 7 40 40 H 1.09001 * 117.49988 * 215.01017 * 14 7 5 41 41 H 1.08999 * 117.49704 * 0.02562 * 14 7 5 42 42 H 1.09000 * 117.50018 * 359.97438 * 15 7 5 43 43 H 1.09002 * 117.49881 * 144.97039 * 15 7 5 44 44 H 1.09004 * 109.46115 * 178.63573 * 16 2 1 45 45 H 1.08997 * 109.46324 * 298.60449 * 16 2 1 46 46 H 1.08994 * 109.46589 * 301.36089 * 17 16 2 47 47 H 1.08999 * 109.49462 * 181.28363 * 17 16 2 48 48 H 1.09001 * 109.58767 * 185.59420 * 18 17 16 49 49 H 1.08997 * 109.58888 * 65.16543 * 18 17 16 50 50 H 0.97003 * 120.00464 * 180.02562 * 23 22 20 51 51 H 1.09002 * 109.58770 * 186.60570 * 28 19 18 52 52 H 1.08995 * 109.58352 * 66.17954 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 7 1.5527 2.1331 -1.1962 5 6 1.8784 3.4234 -1.4092 6 8 2.6516 3.9849 -0.6624 7 6 1.2819 4.1685 -2.5755 8 6 -0.2067 4.3937 -2.5102 9 6 -0.8313 4.5348 -1.2850 10 6 -2.1967 4.7419 -1.2252 11 6 -2.9384 4.8025 -2.3900 12 6 -2.3130 4.6670 -3.6155 13 6 -0.9476 4.4594 -3.6754 14 6 2.1336 5.2601 -3.2267 15 6 1.9010 3.9339 -3.9549 16 6 2.0408 -0.7227 1.2486 17 6 1.5044 -2.1559 1.2658 18 6 2.0154 -2.9038 0.0304 19 7 1.6523 -2.1380 -1.1698 20 6 0.9639 -2.7313 -2.1942 21 1 0.2690 -2.1524 -2.7843 22 6 1.1593 -4.0767 -2.4740 23 7 0.3373 -4.7061 -3.2867 24 14 2.5892 -4.9943 -1.6972 25 1 2.1861 -5.4977 -0.3595 26 1 2.9712 -6.1391 -2.5624 27 1 3.7467 -4.0754 -1.5523 28 6 2.0414 -0.7234 -1.2498 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1306 1.4418 0.0005 33 1 1.6775 1.9563 0.8900 34 1 0.9945 1.6620 -1.8346 35 1 -0.2525 4.4833 -0.3747 36 1 -2.6847 4.8518 -0.2679 37 1 -4.0059 4.9598 -2.3431 38 1 -2.8917 4.7191 -4.5258 39 1 -0.4596 4.3499 -4.6326 40 1 1.6172 6.1411 -3.6077 41 1 3.1255 5.4390 -2.8117 42 1 2.7400 3.2410 -4.0188 43 1 1.2315 3.9420 -4.8150 44 1 3.1305 -0.7435 1.2358 45 1 1.6982 -0.1955 2.1390 46 1 0.4147 -2.1361 1.2542 47 1 1.8499 -2.6628 2.1668 48 1 1.5573 -3.8919 -0.0141 49 1 3.0994 -3.0035 0.0861 50 1 0.4736 -5.6464 -3.4820 51 1 1.6003 -0.2729 -2.1390 52 1 3.1274 -0.6454 -1.2985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699878791.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:28 Heat of formation + Delta-G solvation = 34.039766 kcal Electronic energy + Delta-G solvation = -30974.923178 eV Core-core repulsion = 27133.434436 eV Total energy + Delta-G solvation = -3841.488742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.69196 -39.30268 -38.48955 -36.52927 -35.07857 -33.20464 -31.38723 -31.09456 -30.80458 -30.68962 -26.94906 -26.45150 -25.35528 -24.38341 -23.05057 -22.51689 -22.06770 -21.70349 -21.04296 -19.66525 -18.21312 -17.75273 -16.87100 -16.57180 -15.90321 -15.49957 -15.39163 -15.06508 -14.95302 -14.68843 -14.22166 -14.09925 -13.93031 -13.68773 -13.47926 -13.45181 -13.05376 -12.87864 -12.70990 -12.57043 -12.33841 -11.95951 -11.89011 -11.53041 -11.50822 -11.33503 -11.29632 -11.21296 -10.92849 -10.75182 -10.69868 -10.52308 -10.46637 -10.00029 -9.91592 -9.73385 -9.57856 -9.44816 -9.09222 -8.95119 -8.76256 -8.63419 -6.91255 -5.95798 -3.39601 1.12257 1.23570 2.54695 3.13112 3.28704 3.39534 3.45607 3.48093 3.83490 4.26340 4.49932 4.57215 4.59650 4.71895 4.80187 4.82936 4.89855 4.97910 5.10846 5.16068 5.19444 5.22718 5.37367 5.38742 5.44641 5.51069 5.60568 5.67318 5.71141 5.78112 5.81785 5.84437 5.89534 5.90825 5.95101 6.01202 6.21022 6.25207 6.29944 6.32155 6.35232 6.36181 6.39796 6.49432 6.57331 6.60903 6.63952 6.70273 6.75034 6.80526 6.99435 7.57608 7.98710 8.24304 8.31998 8.91774 9.69378 10.09001 11.20213 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.003198 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.225632 B = 8752.653293 C = 9195.034449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C 0.133 3.867 4 N -0.713 5.713 5 C 0.553 3.447 6 O -0.542 6.542 7 C -0.124 4.124 8 C -0.040 4.040 9 C -0.107 4.107 10 C -0.115 4.115 11 C -0.122 4.122 12 C -0.116 4.116 13 C -0.115 4.115 14 C -0.134 4.134 15 C -0.156 4.156 16 C -0.096 4.096 17 C -0.136 4.136 18 C 0.118 3.882 19 N -0.603 5.603 20 C -0.259 4.259 21 H 0.084 0.916 22 C 0.025 3.975 23 N -0.914 5.914 24 Si 0.895 3.105 25 H -0.287 1.287 26 H -0.306 1.306 27 H -0.272 1.272 28 C 0.163 3.837 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.406 0.594 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.073 0.927 49 H 0.025 0.975 50 H 0.263 0.737 51 H 0.059 0.941 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 19.173 2.690 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.095 4.095 3 C 0.009 3.991 4 N -0.364 5.364 5 C 0.338 3.662 6 O -0.420 6.420 7 C -0.127 4.127 8 C -0.040 4.040 9 C -0.125 4.125 10 C -0.133 4.133 11 C -0.140 4.140 12 C -0.134 4.134 13 C -0.133 4.133 14 C -0.171 4.171 15 C -0.193 4.193 16 C -0.134 4.134 17 C -0.175 4.175 18 C -0.007 4.007 19 N -0.327 5.327 20 C -0.387 4.387 21 H 0.101 0.899 22 C -0.174 4.174 23 N -0.557 5.557 24 Si 0.726 3.274 25 H -0.215 1.215 26 H -0.234 1.234 27 H -0.197 1.197 28 C 0.037 3.963 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.242 0.758 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.042 0.958 50 H 0.073 0.927 51 H 0.078 0.922 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -1.677 19.388 3.135 19.712 hybrid contribution 0.412 -0.958 0.193 1.060 sum -1.265 18.431 3.329 18.772 Atomic orbital electron populations 1.21767 0.93814 1.03238 0.99926 1.21326 0.96943 0.92471 0.98738 1.21440 0.99002 0.91891 0.86741 1.46027 1.53183 1.11419 1.25798 1.19249 0.80593 0.81724 0.84604 1.90685 1.35280 1.68287 1.47727 1.20153 0.92153 1.05554 0.94863 1.18732 0.91248 1.00340 0.93708 1.20975 0.94844 0.99515 0.97132 1.21120 0.93805 0.99804 0.98533 1.21177 0.99895 1.00290 0.92612 1.21123 0.94468 0.99852 0.97937 1.21032 0.94085 1.00375 0.97829 1.23065 1.00773 0.92515 1.00758 1.23241 1.02884 1.00243 0.92952 1.21360 1.00000 0.96080 0.95926 1.22043 1.01560 0.95359 0.98512 1.21466 0.96964 0.95888 0.86386 1.44253 1.65871 1.06548 1.15979 1.18873 1.17098 0.94131 1.08600 0.89868 1.25373 0.97813 0.97283 0.96941 1.69755 1.37298 1.10260 1.38434 0.86861 0.84423 0.78858 0.77242 1.21513 1.23442 1.19713 1.20919 0.96202 0.85137 0.94090 0.93524 0.90444 0.94010 0.91588 0.91898 0.75769 0.86309 0.85973 0.86057 0.85863 0.85631 0.87815 0.87457 0.87625 0.87286 0.92418 0.92795 0.91335 0.92861 0.90892 0.95763 0.92749 0.92232 0.95929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.81 37.16 0.29 -1.70 16 2 C -0.09 -1.41 0.53 -154.39 -0.08 -1.49 16 3 C 0.13 1.85 4.57 -4.04 -0.02 1.83 16 4 N -0.71 -9.54 4.99 -60.30 -0.30 -9.84 16 5 C 0.55 7.72 5.93 -10.99 -0.07 7.65 16 6 O -0.54 -9.26 16.72 5.56 0.09 -9.16 16 7 C -0.12 -1.41 2.36 -156.81 -0.37 -1.78 16 8 C -0.04 -0.44 5.48 -104.62 -0.57 -1.02 16 9 C -0.11 -1.22 9.32 -39.58 -0.37 -1.59 16 10 C -0.11 -1.15 10.05 -39.59 -0.40 -1.55 16 11 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 12 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 13 C -0.12 -1.13 9.36 -39.58 -0.37 -1.50 16 14 C -0.13 -1.32 9.74 -26.69 -0.26 -1.58 16 15 C -0.16 -1.47 9.57 -26.69 -0.26 -1.73 16 16 C -0.10 -1.42 4.71 -26.69 -0.13 -1.54 16 17 C -0.14 -2.29 5.74 -26.61 -0.15 -2.44 16 18 C 0.12 2.49 4.15 -3.71 -0.02 2.47 16 19 N -0.60 -13.58 2.18 -172.32 -0.38 -13.95 16 20 C -0.26 -6.93 10.06 -15.06 -0.15 -7.08 16 21 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 22 C 0.02 0.70 5.35 -17.43 -0.09 0.61 16 23 N -0.91 -27.54 13.97 55.49 0.78 -26.76 16 24 Si 0.89 22.31 24.24 -169.99 -4.12 18.19 16 25 H -0.29 -6.88 6.42 56.52 0.36 -6.52 16 26 H -0.31 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.27 -6.70 6.57 56.52 0.37 -6.33 16 28 C 0.16 3.03 4.93 -3.71 -0.02 3.01 16 29 H 0.05 0.70 6.86 -51.93 -0.36 0.34 16 30 H 0.08 1.40 5.98 -51.93 -0.31 1.09 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.41 5.33 6.22 -40.82 -0.25 5.08 16 35 H 0.12 1.45 7.36 -52.49 -0.39 1.06 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 1.01 5.94 -52.48 -0.31 0.70 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.11 1.13 8.00 -51.93 -0.42 0.72 16 42 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.11 0.84 6.10 -51.93 -0.32 0.52 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.19 6.34 -51.93 -0.33 0.86 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.07 1.69 4.40 -51.93 -0.23 1.46 16 49 H 0.02 0.52 6.91 -51.93 -0.36 0.16 16 50 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 51 H 0.06 1.10 6.84 -51.93 -0.36 0.75 16 52 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -31.47 396.72 -10.10 -41.57 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -8.32 Total: 6.40 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -3.82 Total: -12.41 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.10 Total: -50.55 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.12 Total: 18.19 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.47 -10.10 -41.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699878791.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.606 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds