Wall clock time and date at job start Wed Apr 1 2020 02:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38242 * 120.00058 * 2 1 4 4 C 1.38231 * 120.00419 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99543 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99858 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47538 * 89.99994 * 6 5 4 8 8 O 1.21279 * 119.99892 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99820 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99492 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46770 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.43728 * 300.16603 * 11 10 9 13 13 C 1.53788 * 109.95055 * 59.97566 * 11 10 9 14 14 C 1.53699 * 108.29630 * 65.61453 * 13 11 10 15 15 H 1.08993 * 112.10479 * 188.30710 * 14 13 11 16 16 C 1.54608 * 108.36886 * 312.66644 * 14 13 11 17 17 C 1.54310 * 104.75286 * 88.88868 * 16 14 13 18 18 C 1.54997 * 104.71384 * 359.83263 * 17 16 14 19 19 H 1.08997 * 112.26541 * 146.97788 * 18 17 16 20 20 C 1.53148 * 109.43393 * 180.25527 * 11 10 9 21 21 N 1.48297 * 107.27548 * 64.69340 * 14 13 11 22 22 C 1.36937 * 128.20852 * 106.79408 * 21 14 13 23 23 H 1.08001 * 119.99563 * 165.07634 * 22 21 14 24 24 C 1.38808 * 119.99873 * 345.06814 * 22 21 14 25 25 N 1.31622 * 120.00074 * 351.76492 * 24 22 21 26 26 Si 1.86800 * 119.99877 * 171.76142 * 24 22 21 27 27 H 1.48506 * 109.47195 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47409 * 300.00372 * 26 24 22 29 29 H 1.48499 * 109.46874 * 60.00603 * 26 24 22 30 30 C 1.38240 * 120.00252 * 0.28082 * 5 4 3 31 31 C 1.38232 * 120.00246 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47289 * 89.99848 * 1 2 3 33 33 H 1.08998 * 109.46884 * 209.99713 * 1 2 3 34 34 H 1.09002 * 109.46729 * 329.99585 * 1 2 3 35 35 H 1.08010 * 119.99443 * 0.02562 * 3 2 1 36 36 H 1.07999 * 120.00306 * 180.02562 * 4 3 2 37 37 H 1.09001 * 109.46880 * 329.99618 * 6 5 4 38 38 H 1.09000 * 109.47186 * 210.00427 * 6 5 4 39 39 H 0.96998 * 120.00238 * 0.02562 * 9 7 6 40 40 H 1.09001 * 109.47200 * 60.00486 * 10 9 7 41 41 H 1.08994 * 109.47110 * 299.99457 * 10 9 7 42 42 H 1.08997 * 109.29216 * 306.30695 * 13 11 10 43 43 H 1.09004 * 110.43112 * 185.58742 * 13 11 10 44 44 H 1.09007 * 110.38366 * 207.71080 * 16 14 13 45 45 H 1.08998 * 110.38461 * 330.07250 * 16 14 13 46 46 H 1.09001 * 110.38424 * 118.82124 * 17 16 14 47 47 H 1.08999 * 110.38456 * 241.18237 * 17 16 14 48 48 H 1.09010 * 109.56912 * 174.05332 * 20 11 10 49 49 H 1.08997 * 109.56848 * 53.69266 * 20 11 10 50 50 H 0.97008 * 119.99724 * 179.97438 * 25 24 22 51 51 H 1.07993 * 119.99784 * 179.72878 * 30 5 4 52 52 H 1.07999 * 119.99673 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 6 6.2800 0.0008 1.4239 8 8 5.4912 0.0017 2.3452 9 7 7.6049 0.0014 1.6711 10 6 8.0922 0.0026 3.0527 11 6 9.6222 0.0025 3.0538 12 1 9.9852 -0.8867 2.5383 13 6 10.1476 1.2534 2.3297 14 6 9.7454 2.4899 3.1493 15 1 9.9592 3.4192 2.6214 16 6 8.2508 2.3614 3.5234 17 6 8.2452 1.5926 4.8613 18 6 9.7409 1.3248 5.1676 19 1 9.9511 1.3321 6.2371 20 6 10.1308 -0.0027 4.4983 21 7 10.4555 2.4072 4.4485 22 6 11.5221 3.1500 4.8797 23 1 11.7882 3.1557 5.9264 24 6 12.2611 3.8954 3.9714 25 7 12.0425 3.7642 2.6801 26 14 13.5659 5.0847 4.5818 27 1 14.2074 5.7538 3.4216 28 1 12.9347 6.1065 5.4551 29 1 14.5925 4.3396 5.3538 30 6 3.5805 -1.1971 -0.0037 31 6 2.1982 -1.1971 -0.0005 32 1 -0.3634 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6581 2.1326 0.0004 36 1 4.1205 2.1326 0.0010 37 1 6.1424 0.8899 -0.5112 38 1 6.1424 -0.8900 -0.5104 39 1 8.2358 0.0019 0.9343 40 1 7.7289 -0.8872 3.5669 41 1 7.7283 0.8929 3.5655 42 1 9.6985 1.3108 1.3382 43 1 11.2331 1.2129 2.2390 44 1 7.8050 3.3480 3.6506 45 1 7.7153 1.7977 2.7595 46 1 7.7968 2.2009 5.6469 47 1 7.7071 0.6506 4.7557 48 1 11.2156 -0.1092 4.5031 49 1 9.6783 -0.8322 5.0417 50 1 12.5588 4.2854 2.0454 51 1 4.1206 -2.1323 -0.0073 52 1 1.6582 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699976323.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:16 Heat of formation + Delta-G solvation = 96.986481 kcal Electronic energy + Delta-G solvation = -30717.083923 eV Core-core repulsion = 26878.324755 eV Total energy + Delta-G solvation = -3838.759168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.21003 -39.77850 -38.51510 -34.68169 -33.83695 -32.84554 -31.40832 -30.98539 -30.52713 -30.01835 -29.52550 -26.74470 -25.26467 -23.46897 -23.23356 -22.80051 -21.26650 -20.57037 -20.23012 -19.39453 -18.69864 -17.11413 -16.90134 -16.40483 -15.91852 -15.76674 -15.21303 -14.85519 -14.74539 -14.32966 -14.00001 -13.76735 -13.50420 -13.44645 -12.97579 -12.90123 -12.79945 -12.64571 -12.53785 -12.02657 -11.95423 -11.89976 -11.66292 -11.43395 -11.38088 -11.23808 -11.17640 -11.01962 -10.81767 -10.72239 -10.55542 -10.18399 -9.88136 -9.65761 -9.49781 -9.39428 -9.33920 -9.19671 -8.95850 -8.59564 -8.55043 -8.08130 -6.79540 -5.76254 -3.10693 1.24137 1.37072 2.86087 3.38583 3.39708 3.43782 3.44388 3.82780 4.47132 4.57301 4.68345 4.81236 4.93806 5.01217 5.09142 5.24682 5.32103 5.33446 5.34904 5.39227 5.43480 5.47993 5.51738 5.62041 5.63572 5.63632 5.77899 5.84691 5.93245 6.00471 6.00770 6.08016 6.11626 6.19412 6.29266 6.33225 6.45091 6.50856 6.51385 6.54291 6.60017 6.66086 6.72628 6.83765 6.86083 6.93923 6.94914 7.08181 7.12916 7.56320 7.59171 7.76612 7.78937 8.25257 8.47948 9.14693 9.76598 10.56311 11.35802 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.002380 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.128054 B =11760.497252 C =12091.719357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.100 4.100 5 C -0.065 4.065 6 C -0.106 4.106 7 C 0.508 3.492 8 O -0.538 6.538 9 N -0.721 5.721 10 C 0.005 3.995 11 C -0.088 4.088 12 H 0.049 0.951 13 C -0.109 4.109 14 C 0.182 3.818 15 H 0.108 0.892 16 C -0.174 4.174 17 C -0.160 4.160 18 C 0.148 3.852 19 H 0.067 0.933 20 C -0.120 4.120 21 N -0.585 5.585 22 C -0.221 4.221 23 H 0.074 0.926 24 C -0.006 4.006 25 N -0.914 5.914 26 Si 0.909 3.091 27 H -0.291 1.291 28 H -0.286 1.286 29 H -0.286 1.286 30 C -0.103 4.103 31 C -0.121 4.121 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.395 0.605 40 H 0.044 0.956 41 H 0.194 0.806 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.045 0.955 50 H 0.252 0.748 51 H 0.118 0.882 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.482 -9.261 -8.031 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.119 4.119 5 C -0.065 4.065 6 C -0.146 4.146 7 C 0.294 3.706 8 O -0.415 6.415 9 N -0.373 5.373 10 C -0.114 4.114 11 C -0.107 4.107 12 H 0.067 0.933 13 C -0.148 4.148 14 C 0.075 3.925 15 H 0.126 0.874 16 C -0.212 4.212 17 C -0.199 4.199 18 C 0.040 3.960 19 H 0.085 0.915 20 C -0.161 4.161 21 N -0.305 5.305 22 C -0.349 4.349 23 H 0.091 0.909 24 C -0.203 4.203 25 N -0.560 5.560 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.213 1.213 29 H -0.212 1.212 30 C -0.121 4.121 31 C -0.139 4.139 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.229 0.771 40 H 0.063 0.937 41 H 0.209 0.791 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.107 0.893 48 H 0.084 0.916 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.136 0.864 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.807 -9.083 -7.416 20.494 hybrid contribution 1.304 0.308 -0.180 1.352 sum -15.503 -8.775 -7.596 19.366 Atomic orbital electron populations 1.20774 0.91433 1.02695 1.02052 1.19892 0.95917 0.93306 1.00109 1.20971 0.94088 0.97450 1.01239 1.20996 0.94224 0.97522 0.99111 1.19271 0.93706 0.93535 1.00013 1.20714 0.93207 1.05150 0.95539 1.20401 0.82504 0.76845 0.90896 1.90706 1.55222 1.49382 1.46233 1.46342 1.06480 1.74318 1.10127 1.25156 0.95915 1.07835 0.82505 1.21374 0.92921 0.98846 0.97524 0.93297 1.22169 1.01713 0.94740 0.96198 1.21467 0.85631 0.97762 0.87620 0.87383 1.23566 1.01539 0.99139 0.96993 1.23436 0.98998 1.00047 0.97389 1.21634 0.90422 0.88397 0.95539 0.91514 1.22112 1.00974 0.98238 0.94731 1.45177 1.34015 1.36939 1.14419 1.18952 1.03510 1.20004 0.92431 0.90858 1.24814 0.98828 1.01357 0.95294 1.69844 1.43121 1.43267 0.99805 0.86244 0.81386 0.81038 0.77332 1.21693 1.21272 1.21220 1.20939 0.94199 0.97333 0.99619 1.20935 0.94049 0.97398 1.01514 0.91385 0.91693 0.91625 0.86197 0.86072 0.87938 0.88292 0.77070 0.93743 0.79108 0.94581 0.90526 0.93213 0.88904 0.92675 0.89308 0.91632 0.93681 0.93751 0.86382 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 4 C -0.10 -1.17 9.70 -39.59 -0.38 -1.56 16 5 C -0.06 -0.77 4.37 -104.62 -0.46 -1.22 16 6 C -0.11 -1.11 5.83 -29.04 -0.17 -1.28 16 7 C 0.51 7.20 7.58 -10.99 -0.08 7.12 16 8 O -0.54 -9.76 16.03 5.56 0.09 -9.67 16 9 N -0.72 -9.88 4.39 -60.29 -0.26 -10.14 16 10 C 0.00 0.08 2.68 -4.04 -0.01 0.06 16 11 C -0.09 -1.49 2.75 -90.13 -0.25 -1.73 16 12 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 13 C -0.11 -2.14 5.28 -25.96 -0.14 -2.28 16 14 C 0.18 4.04 3.11 -65.73 -0.20 3.84 16 15 H 0.11 2.79 6.29 -51.93 -0.33 2.46 16 16 C -0.17 -3.33 5.72 -25.20 -0.14 -3.48 16 17 C -0.16 -2.91 5.74 -24.99 -0.14 -3.05 16 18 C 0.15 2.97 4.34 -65.52 -0.28 2.68 16 19 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 20 C -0.12 -2.18 5.37 -26.29 -0.14 -2.32 16 21 N -0.58 -14.04 2.82 -152.53 -0.43 -14.47 16 22 C -0.22 -5.89 10.38 -15.06 -0.16 -6.05 16 23 H 0.07 1.92 7.84 -52.49 -0.41 1.51 16 24 C -0.01 -0.17 5.43 -17.43 -0.09 -0.26 16 25 N -0.91 -25.21 10.53 55.49 0.58 -24.62 16 26 Si 0.91 21.52 29.56 -169.99 -5.03 16.50 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 31 C -0.12 -1.27 9.70 -39.59 -0.38 -1.65 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.40 4.65 7.33 -40.82 -0.30 4.35 16 40 H 0.04 0.73 8.00 -51.93 -0.42 0.31 16 41 H 0.19 3.29 1.12 -166.32 -0.19 3.11 16 42 H 0.04 0.63 6.75 -51.93 -0.35 0.28 16 43 H 0.08 1.78 7.99 -51.93 -0.41 1.37 16 44 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 45 H 0.09 1.65 3.93 -51.93 -0.20 1.44 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.09 1.50 4.85 -51.93 -0.25 1.25 16 48 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 49 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 51 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 52 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 391.93 15.07 5.91 5.91 Total: -1.00 -30.86 391.93 -11.53 -42.39 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.33 Total: 10.55 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -4.06 Total: -16.44 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.11 Total: -49.24 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.86 -11.53 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699976323.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.380 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds