Wall clock time and date at job start Wed Apr 1 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00024 * 2 1 4 4 C 1.38211 * 120.00163 * 180.23255 * 3 2 1 5 5 C 1.38260 * 120.00003 * 359.80844 * 4 3 2 6 6 C 1.38215 * 119.99681 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99534 * 180.02562 * 6 5 4 8 8 H 1.09000 * 115.54551 * 154.30614 * 7 6 5 9 9 C 1.52991 * 117.50244 * 8.59496 * 7 6 5 10 10 C 1.52997 * 117.49695 * 299.97009 * 7 6 5 11 11 H 1.08997 * 117.50154 * 359.97438 * 10 7 6 12 12 C 1.50702 * 117.50034 * 214.98214 * 10 7 6 13 13 O 1.21282 * 120.00012 * 0.02562 * 12 10 7 14 14 N 1.34770 * 120.00363 * 180.02562 * 12 10 7 15 15 C 1.46929 * 120.62968 * 0.02562 * 14 12 10 16 16 C 1.53192 * 108.77765 * 126.36856 * 15 14 12 17 17 C 1.53035 * 109.31413 * 54.63616 * 16 15 14 18 18 C 1.53042 * 109.53497 * 298.63398 * 17 16 15 19 19 H 1.08999 * 109.50205 * 301.41553 * 18 17 16 20 20 C 1.53004 * 109.49706 * 181.31437 * 18 17 16 21 21 N 1.46502 * 109.46825 * 65.00285 * 20 18 17 22 22 C 1.36934 * 120.00113 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99771 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00065 * 180.02562 * 22 21 20 25 25 N 1.31617 * 120.00151 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99758 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47250 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.46781 * 120.00186 * 26 24 22 29 29 H 1.48506 * 109.46908 * 239.99803 * 26 24 22 30 30 C 1.46928 * 120.63667 * 179.72122 * 14 12 10 31 31 C 1.38211 * 120.00162 * 179.78274 * 2 1 3 32 32 H 1.09001 * 109.47236 * 270.20985 * 1 2 3 33 33 H 1.09000 * 109.47285 * 30.21178 * 1 2 3 34 34 H 1.08993 * 109.47149 * 150.21673 * 1 2 3 35 35 H 1.08004 * 120.00379 * 0.06651 * 3 2 1 36 36 H 1.08002 * 120.00349 * 179.83142 * 4 3 2 37 37 H 1.07996 * 119.99840 * 179.97438 * 5 4 3 38 38 H 1.09004 * 117.50035 * 0.02562 * 9 7 6 39 39 H 1.09002 * 117.50269 * 145.02330 * 9 7 6 40 40 H 1.09008 * 109.58809 * 246.15739 * 15 14 12 41 41 H 1.08997 * 109.58472 * 6.57707 * 15 14 12 42 42 H 1.08999 * 109.49529 * 174.58554 * 16 15 14 43 43 H 1.09001 * 109.49329 * 294.67969 * 16 15 14 44 44 H 1.08994 * 109.46215 * 58.65414 * 17 16 15 45 45 H 1.08996 * 109.45875 * 178.63221 * 17 16 15 46 46 H 1.08995 * 109.47189 * 184.99890 * 20 18 17 47 47 H 1.08990 * 109.47486 * 305.00537 * 20 18 17 48 48 H 0.97004 * 119.99793 * 0.02562 * 21 20 18 49 49 H 0.96998 * 119.99860 * 179.97438 * 25 24 22 50 50 H 1.09003 * 109.57797 * 353.42108 * 30 14 12 51 51 H 1.09004 * 109.58827 * 113.83935 * 30 14 12 52 52 H 1.08002 * 120.00200 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0049 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0012 7 6 4.3342 -2.5020 -0.0015 8 1 3.8033 -3.3514 0.4282 9 6 5.8501 -2.4425 0.1958 10 6 5.2704 -2.7768 -1.1800 11 1 5.3409 -2.0139 -1.9553 12 6 5.3885 -4.2013 -1.6574 13 8 4.7539 -5.0786 -1.1110 14 7 6.1992 -4.5004 -2.6916 15 6 6.9747 -3.4487 -3.3634 16 6 8.4507 -3.8585 -3.3796 17 6 8.5847 -5.2429 -4.0179 18 6 7.8082 -6.2669 -3.1868 19 1 8.1941 -6.2761 -2.1674 20 6 7.9697 -7.6561 -3.8072 21 7 9.3723 -8.0700 -3.7197 22 6 9.7591 -9.2872 -4.2134 23 1 9.0302 -9.9420 -4.6677 24 6 11.0880 -9.6795 -4.1300 25 7 11.9764 -8.8813 -3.5769 26 14 11.6158 -11.3398 -4.8042 27 1 10.4362 -12.0415 -5.3711 28 1 12.6329 -11.1414 -5.8679 29 1 12.1978 -12.1565 -3.7089 30 6 6.3296 -5.8854 -3.1646 31 6 2.1980 -1.1969 0.0045 32 1 -0.3634 0.0038 1.0277 33 1 -0.3634 0.8881 -0.5171 34 1 -0.3633 -0.8919 -0.5104 35 1 1.6583 2.1327 0.0011 36 1 4.1204 2.1327 -0.0076 37 1 5.3516 0.0001 -0.0099 38 1 6.3025 -1.4594 0.3264 39 1 6.3170 -3.2529 0.7557 40 1 6.6176 -3.3283 -4.3863 41 1 6.8621 -2.5094 -2.8220 42 1 9.0230 -3.1339 -3.9589 43 1 8.8306 -3.8902 -2.3584 44 1 8.1819 -5.2166 -5.0303 45 1 9.6365 -5.5264 -4.0527 46 1 7.3462 -8.3694 -3.2683 47 1 7.6648 -7.6247 -4.8531 48 1 10.0269 -7.4819 -3.3113 49 1 12.9049 -9.1556 -3.5183 50 1 5.7914 -6.5532 -2.4919 51 1 5.9187 -5.9681 -4.1708 52 1 1.6581 -2.1323 0.0077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713242059.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:43 Heat of formation + Delta-G solvation = 12.830318 kcal Electronic energy + Delta-G solvation = -28992.673521 eV Core-core repulsion = 25150.265068 eV Total energy + Delta-G solvation = -3842.408453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.69417 -39.72076 -38.00562 -36.51627 -34.95858 -32.90950 -32.71157 -31.70230 -31.16505 -29.96530 -27.27650 -26.20838 -25.54789 -24.09574 -23.60697 -22.64250 -22.33432 -21.76652 -20.19683 -19.74887 -18.73859 -17.79520 -17.11772 -16.79102 -16.16941 -15.52222 -15.34033 -15.09616 -14.77508 -14.46113 -14.25181 -14.17097 -14.12627 -13.94563 -13.59603 -13.46130 -13.12255 -12.96986 -12.72955 -12.63825 -12.55011 -12.42958 -12.17416 -12.08563 -11.82000 -11.60268 -11.25535 -11.06806 -10.91673 -10.85675 -10.83399 -10.71961 -10.61531 -10.32849 -10.16953 -9.99861 -9.77975 -9.64804 -9.06680 -8.86849 -8.82176 -8.58188 -6.90158 -5.75642 -3.03756 0.95952 1.06470 2.42184 2.88542 3.31900 3.44218 3.50069 3.52210 3.76874 4.11810 4.38710 4.50014 4.51347 4.59369 4.60463 4.68693 4.78323 4.79899 4.89180 5.00192 5.01786 5.05243 5.11852 5.20779 5.23417 5.33488 5.37191 5.39266 5.47861 5.51793 5.58112 5.61644 5.65758 5.70052 5.78577 5.83308 5.85555 5.89683 6.01334 6.09790 6.14967 6.19241 6.23002 6.26137 6.32775 6.47694 6.55889 6.67633 6.68324 6.81098 6.90963 7.39449 7.72180 8.14988 8.43475 9.54793 10.12741 10.47626 11.47430 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.029520 B = 0.001769 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.266205 B =15826.636929 C =16184.230956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.046 4.046 7 C -0.086 4.086 8 H 0.127 0.873 9 C -0.143 4.143 10 C -0.176 4.176 11 H 0.125 0.875 12 C 0.544 3.456 13 O -0.543 6.543 14 N -0.603 5.603 15 C 0.107 3.893 16 C -0.135 4.135 17 C -0.112 4.112 18 C -0.106 4.106 19 H 0.073 0.927 20 C 0.160 3.840 21 N -0.730 5.730 22 C -0.237 4.237 23 H 0.071 0.929 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.119 3.881 31 C -0.110 4.110 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.020 0.980 47 H 0.021 0.979 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.091 0.909 51 H 0.067 0.933 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.932 24.599 6.235 31.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.144 4.144 6 C -0.046 4.046 7 C -0.104 4.104 8 H 0.145 0.855 9 C -0.180 4.180 10 C -0.197 4.197 11 H 0.143 0.857 12 C 0.332 3.668 13 O -0.420 6.420 14 N -0.335 5.335 15 C -0.016 4.016 16 C -0.173 4.173 17 C -0.149 4.149 18 C -0.126 4.126 19 H 0.091 0.909 20 C 0.032 3.968 21 N -0.375 5.375 22 C -0.369 4.369 23 H 0.089 0.911 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.003 4.003 31 C -0.128 4.128 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.110 0.890 51 H 0.086 0.914 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.290 23.952 6.423 31.418 hybrid contribution 0.785 -0.672 -0.385 1.103 sum -18.504 23.280 6.038 30.345 Atomic orbital electron populations 1.20802 0.91142 1.02868 1.02397 1.19916 0.96126 0.93044 0.99356 1.21039 0.94327 0.97471 1.01585 1.21103 0.94280 0.97885 0.99866 1.21062 1.00055 0.91905 1.01373 1.19114 0.93297 0.92907 0.99280 1.21087 0.91986 0.96833 1.00514 0.85534 1.23137 0.95348 1.03745 0.95750 1.22354 1.07639 0.96089 0.93580 0.85692 1.19562 0.78876 0.89147 0.79260 1.90690 1.45663 1.49104 1.56575 1.48016 1.43554 1.09171 1.32777 1.21818 0.91910 0.90279 0.97590 1.21943 0.94916 0.98393 1.02045 1.21534 1.02168 0.92818 0.98422 1.21581 0.93897 0.96450 1.00666 0.90862 1.20585 0.88322 0.91087 0.96839 1.42348 1.03141 1.19692 1.72298 1.19292 0.92736 0.93896 1.30930 0.91124 1.24733 0.96032 0.98561 1.01759 1.69668 1.01991 1.36617 1.50024 0.86114 0.78237 0.83706 0.78136 1.20562 1.21904 1.21900 1.21563 0.97242 0.81537 0.99997 1.20898 0.93356 0.97825 1.00716 0.91115 0.91548 0.91407 0.86207 0.86003 0.85848 0.87363 0.87551 0.91357 0.89945 0.90836 0.91486 0.92072 0.90214 0.96186 0.96158 0.78233 0.93618 0.89014 0.91445 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.01 36.00 0.36 -0.30 16 2 C -0.08 -0.66 5.88 -104.63 -0.62 -1.28 16 3 C -0.13 -0.92 9.70 -39.58 -0.38 -1.31 16 4 C -0.11 -0.82 10.05 -39.58 -0.40 -1.22 16 5 C -0.13 -0.99 9.30 -39.58 -0.37 -1.36 16 6 C -0.05 -0.42 5.61 -104.62 -0.59 -1.00 16 7 C -0.09 -0.84 5.55 -91.78 -0.51 -1.34 16 8 H 0.13 1.41 7.67 -51.93 -0.40 1.02 16 9 C -0.14 -1.23 9.56 -26.74 -0.26 -1.49 16 10 C -0.18 -1.74 4.59 -91.77 -0.42 -2.17 16 11 H 0.13 1.03 6.82 -51.93 -0.35 0.68 16 12 C 0.54 7.39 7.48 -10.99 -0.08 7.31 16 13 O -0.54 -9.34 15.67 5.56 0.09 -9.26 16 14 N -0.60 -7.75 2.98 -173.04 -0.52 -8.26 16 15 C 0.11 1.07 6.30 -3.71 -0.02 1.04 16 16 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 17 C -0.11 -1.65 5.06 -26.69 -0.13 -1.79 16 18 C -0.11 -1.75 2.36 -90.74 -0.21 -1.96 16 19 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 20 C 0.16 3.24 5.66 -4.04 -0.02 3.22 16 21 N -0.73 -18.56 5.32 -59.91 -0.32 -18.88 16 22 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 23 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 26 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 C 0.12 1.73 5.68 -3.95 -0.02 1.71 16 31 C -0.11 -0.98 9.39 -39.58 -0.37 -1.35 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 35 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 36 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.12 0.77 6.02 -52.49 -0.32 0.46 16 38 H 0.11 0.70 6.18 -51.93 -0.32 0.38 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.08 0.64 5.67 -51.93 -0.29 0.35 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 1.40 7.15 -51.93 -0.37 1.03 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.38 10.18 6.85 -40.82 -0.28 9.90 16 49 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.09 1.48 7.01 -51.93 -0.36 1.12 16 51 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 52 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 412.94 15.07 6.22 6.22 Total: -1.00 -33.22 412.94 -11.86 -45.08 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.58 Total: 7.47 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -4.46 Total: -12.36 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.11 Total: -54.75 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.22 -11.86 -45.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713242059.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.914 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds