Wall clock time and date at job start Wed Apr 1 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 120.00105 * 2 1 4 4 C 1.38209 * 119.99877 * 179.72451 * 3 2 1 5 5 C 1.38260 * 120.00092 * 0.56013 * 4 3 2 6 6 C 1.38212 * 119.99650 * 359.45889 * 5 4 3 7 7 C 1.50708 * 119.99857 * 180.27932 * 6 5 4 8 8 H 1.09004 * 115.54428 * 154.41936 * 7 6 5 9 9 C 1.53000 * 117.49890 * 8.75269 * 7 6 5 10 10 C 1.52994 * 117.50064 * 300.08978 * 7 6 5 11 11 H 1.08999 * 117.49644 * 0.02562 * 10 7 6 12 12 C 1.50696 * 117.50102 * 215.00168 * 10 7 6 13 13 O 1.21282 * 119.99750 * 359.97438 * 12 10 7 14 14 N 1.34777 * 120.00068 * 180.02562 * 12 10 7 15 15 C 1.46920 * 120.63166 * 359.97438 * 14 12 10 16 16 C 1.53194 * 108.77616 * 233.58620 * 15 14 12 17 17 C 1.53044 * 109.31029 * 305.36622 * 16 15 14 18 18 C 1.53036 * 109.54096 * 61.36537 * 17 16 15 19 19 H 1.09008 * 109.50068 * 58.58337 * 18 17 16 20 20 C 1.52998 * 109.50232 * 178.64970 * 18 17 16 21 21 N 1.46506 * 109.46708 * 295.00462 * 20 18 17 22 22 C 1.36939 * 119.99755 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99906 * 359.97438 * 22 21 20 24 24 C 1.38808 * 119.99919 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00105 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99938 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47229 * 60.00166 * 26 24 22 28 28 H 1.48499 * 109.47416 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47121 * 300.00502 * 26 24 22 30 30 C 1.46930 * 120.63052 * 179.72016 * 14 12 10 31 31 C 1.38216 * 119.99787 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46865 * 269.97957 * 1 2 3 33 33 H 1.08997 * 109.46761 * 29.97160 * 1 2 3 34 34 H 1.08995 * 109.47452 * 149.97650 * 1 2 3 35 35 H 1.07999 * 120.00093 * 0.02562 * 3 2 1 36 36 H 1.08004 * 120.00239 * 180.29704 * 4 3 2 37 37 H 1.08002 * 120.00476 * 179.74522 * 5 4 3 38 38 H 1.09005 * 117.49705 * 0.02562 * 9 7 6 39 39 H 1.09001 * 117.49703 * 145.01419 * 9 7 6 40 40 H 1.08998 * 109.58734 * 353.37166 * 15 14 12 41 41 H 1.08996 * 109.58671 * 113.80053 * 15 14 12 42 42 H 1.09001 * 109.49614 * 65.31420 * 16 15 14 43 43 H 1.09000 * 109.50101 * 185.38119 * 16 15 14 44 44 H 1.09007 * 109.45716 * 181.38414 * 17 16 15 45 45 H 1.08999 * 109.46146 * 301.35124 * 17 16 15 46 46 H 1.09007 * 109.46821 * 54.99420 * 20 18 17 47 47 H 1.08988 * 109.47427 * 174.99962 * 20 18 17 48 48 H 0.96994 * 120.00374 * 359.97438 * 21 20 18 49 49 H 0.97000 * 119.99813 * 180.02562 * 25 24 22 50 50 H 1.08991 * 109.58749 * 246.20362 * 30 14 12 51 51 H 1.09008 * 109.58231 * 6.62581 * 30 14 12 52 52 H 1.07997 * 119.99803 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2718 -0.0001 -0.0002 6 6 3.5806 -1.1970 -0.0006 7 6 4.3341 -2.5022 -0.0007 8 1 3.8008 -3.3529 0.4237 9 6 5.8490 -2.4434 0.2061 10 6 5.2768 -2.7736 -1.1748 11 1 5.3524 -2.0079 -1.9469 12 6 5.3971 -4.1965 -1.6560 13 8 4.7599 -5.0754 -1.1153 14 7 6.2136 -4.4926 -2.6867 15 6 6.9923 -3.4389 -3.3514 16 6 6.7109 -3.4927 -4.8563 17 6 6.9939 -4.9049 -5.3739 18 6 6.0680 -5.9020 -4.6734 19 1 5.0297 -5.6268 -4.8591 20 6 6.3283 -7.3087 -5.2157 21 7 5.9557 -7.3628 -6.6316 22 6 6.1027 -8.5291 -7.3341 23 1 6.4937 -9.4088 -6.8446 24 6 5.7491 -8.5805 -8.6754 25 7 5.2731 -7.5083 -9.2721 26 14 5.9503 -10.1712 -9.6340 27 1 5.1276 -11.2356 -9.0051 28 1 5.5054 -9.9643 -11.0356 29 1 7.3785 -10.5783 -9.6234 30 6 6.3461 -5.8762 -3.1632 31 6 2.1981 -1.1970 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5142 35 1 1.6584 2.1326 0.0004 36 1 4.1205 2.1326 0.0106 37 1 5.3518 -0.0002 0.0001 38 1 6.3005 -1.4607 0.3427 39 1 6.3123 -3.2556 0.7663 40 1 6.6988 -2.4652 -2.9594 41 1 8.0551 -3.6019 -3.1724 42 1 5.6666 -3.2403 -5.0403 43 1 7.3539 -2.7799 -5.3725 44 1 6.8179 -4.9396 -6.4491 45 1 8.0317 -5.1662 -5.1672 46 1 7.3862 -7.5492 -5.1091 47 1 5.7334 -8.0299 -4.6556 48 1 5.6049 -6.5727 -7.0713 49 1 5.0257 -7.5445 -10.2094 50 1 7.3570 -6.2342 -2.9691 51 1 5.6259 -6.5110 -2.6468 52 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713242060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:48 Heat of formation + Delta-G solvation = 13.558616 kcal Electronic energy + Delta-G solvation = -29077.002707 eV Core-core repulsion = 25234.625835 eV Total energy + Delta-G solvation = -3842.376872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.68394 -39.69525 -37.98370 -36.50811 -34.95020 -32.88101 -32.69156 -31.68686 -31.14216 -29.94309 -27.24084 -26.20812 -25.53991 -24.07526 -23.61758 -22.64677 -22.32455 -21.73427 -20.15181 -19.73752 -18.81384 -17.74857 -17.12528 -16.77512 -16.16783 -15.50026 -15.40586 -15.03441 -14.78435 -14.36722 -14.26061 -14.14699 -14.08542 -13.94738 -13.63499 -13.42384 -13.08091 -12.90130 -12.80366 -12.61852 -12.52502 -12.43864 -12.16445 -12.05694 -11.81403 -11.58538 -11.23224 -11.06665 -10.91536 -10.85921 -10.79786 -10.73841 -10.58006 -10.34341 -10.18537 -10.02802 -9.77489 -9.63754 -9.03502 -8.85245 -8.80106 -8.57261 -6.89651 -5.74609 -3.02882 0.98655 1.09599 2.42035 2.90166 3.32362 3.45708 3.49841 3.51013 3.76202 4.12804 4.38440 4.49037 4.53233 4.60975 4.61274 4.69239 4.78694 4.80651 4.91754 5.01847 5.04837 5.06272 5.14044 5.19290 5.28262 5.32486 5.37284 5.40935 5.50382 5.52681 5.58663 5.61668 5.64336 5.72106 5.79723 5.85547 5.86021 5.90094 6.01170 6.10046 6.17239 6.19888 6.23816 6.29494 6.35055 6.48082 6.55718 6.68110 6.71286 6.81774 6.91759 7.39498 7.71699 8.15159 8.44545 9.55556 10.13610 10.48485 11.48349 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.001957 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.604345 B =14306.657927 C =14899.102972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.047 4.047 7 C -0.084 4.084 8 H 0.127 0.873 9 C -0.144 4.144 10 C -0.176 4.176 11 H 0.127 0.873 12 C 0.543 3.457 13 O -0.543 6.543 14 N -0.603 5.603 15 C 0.107 3.893 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.106 4.106 19 H 0.073 0.927 20 C 0.160 3.840 21 N -0.730 5.730 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.119 3.881 31 C -0.109 4.109 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.068 0.932 51 H 0.092 0.908 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 20.897 21.670 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.047 4.047 7 C -0.103 4.103 8 H 0.145 0.855 9 C -0.181 4.181 10 C -0.197 4.197 11 H 0.144 0.856 12 C 0.331 3.669 13 O -0.420 6.420 14 N -0.335 5.335 15 C -0.016 4.016 16 C -0.175 4.175 17 C -0.149 4.149 18 C -0.126 4.126 19 H 0.092 0.908 20 C 0.031 3.969 21 N -0.375 5.375 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.739 3.261 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.004 4.004 31 C -0.127 4.127 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.086 0.914 51 H 0.110 0.890 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.087 20.246 21.896 29.842 hybrid contribution 0.070 -0.540 -0.992 1.132 sum -1.017 19.706 20.904 28.746 Atomic orbital electron populations 1.20811 0.91099 1.02983 1.02374 1.19929 0.96174 0.93034 0.99222 1.21042 0.94323 0.97487 1.01503 1.21094 0.94290 0.97853 0.99932 1.21036 0.99958 0.91914 1.01523 1.19104 0.93319 0.92875 0.99413 1.21084 0.91812 0.96890 1.00493 0.85536 1.23135 0.95601 1.03603 0.95763 1.22388 1.07576 0.96228 0.93510 0.85569 1.19548 0.78636 0.89112 0.79558 1.90690 1.45326 1.48964 1.57069 1.48025 1.43606 1.09321 1.32559 1.21821 0.95736 0.90643 0.93361 1.21964 1.02399 0.98706 0.94405 1.21531 0.99206 0.92659 1.01501 1.21738 1.00426 0.97302 0.93093 0.90818 1.20588 0.97143 0.92148 0.86978 1.42337 1.77741 1.12359 1.05045 1.19196 1.35606 0.89955 0.92195 0.91241 1.24735 1.02025 0.97392 0.96926 1.69647 1.49761 1.27622 1.11321 0.86256 0.77712 0.83013 0.79137 1.21280 1.21718 1.21302 1.21747 1.02212 0.81651 0.94747 1.20910 0.93361 0.97879 1.00560 0.91122 0.91509 0.91326 0.86185 0.86023 0.85924 0.87411 0.87710 0.89968 0.91235 0.91549 0.90812 0.90228 0.92061 0.96179 0.96195 0.78229 0.93505 0.91370 0.88999 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.08 -0.71 5.88 -104.62 -0.62 -1.33 16 3 C -0.13 -0.98 9.70 -39.59 -0.38 -1.36 16 4 C -0.11 -0.86 10.05 -39.58 -0.40 -1.25 16 5 C -0.13 -1.02 9.30 -39.58 -0.37 -1.38 16 6 C -0.05 -0.44 5.61 -104.62 -0.59 -1.03 16 7 C -0.08 -0.82 5.55 -91.77 -0.51 -1.33 16 8 H 0.13 1.42 7.67 -51.93 -0.40 1.02 16 9 C -0.14 -1.14 9.57 -26.69 -0.26 -1.40 16 10 C -0.18 -1.76 4.76 -91.74 -0.44 -2.19 16 11 H 0.13 1.10 6.56 -51.93 -0.34 0.76 16 12 C 0.54 7.40 7.48 -10.99 -0.08 7.32 16 13 O -0.54 -9.36 15.67 5.56 0.09 -9.27 16 14 N -0.60 -7.75 2.97 -172.54 -0.51 -8.27 16 15 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 16 C -0.14 -1.58 6.08 -26.61 -0.16 -1.74 16 17 C -0.11 -1.66 5.05 -26.69 -0.13 -1.80 16 18 C -0.11 -1.76 2.39 -90.30 -0.22 -1.97 16 19 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 20 C 0.16 3.26 5.66 -4.04 -0.02 3.23 16 21 N -0.73 -18.67 5.32 -59.91 -0.32 -18.99 16 22 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 23 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 24 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 26 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 C 0.12 1.73 5.74 -3.51 -0.02 1.71 16 31 C -0.11 -1.04 9.39 -39.58 -0.37 -1.41 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 37 H 0.12 0.76 6.02 -52.49 -0.32 0.44 16 38 H 0.11 0.62 6.18 -51.93 -0.32 0.30 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.64 5.51 -51.93 -0.29 0.36 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.41 7.15 -51.93 -0.37 1.04 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 47 H 0.02 0.42 8.14 -51.94 -0.42 0.00 16 48 H 0.38 10.25 6.85 -40.82 -0.28 9.97 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.09 1.49 7.00 -51.92 -0.36 1.12 16 52 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 412.80 15.07 6.22 6.22 Total: -1.00 -33.38 412.80 -11.85 -45.23 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.56 Total: 7.88 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -4.47 Total: -12.72 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.11 Total: -55.00 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.38 -11.85 -45.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713242060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.792 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds