Wall clock time and date at job start Wed Apr 1 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38261 * 119.99801 * 2 1 4 4 C 1.38211 * 119.99380 * 180.23302 * 3 2 1 5 5 C 1.38255 * 120.00288 * 359.81476 * 4 3 2 6 6 C 1.38214 * 120.00235 * 359.97438 * 5 4 3 7 7 C 1.38210 * 119.99975 * 179.79262 * 2 1 3 8 8 C 1.50703 * 119.99852 * 359.97438 * 7 2 1 9 9 H 1.09000 * 115.55482 * 334.06011 * 8 7 2 10 10 C 1.53003 * 117.51608 * 188.35211 * 8 7 2 11 11 C 1.53001 * 60.00089 * 252.51976 * 10 8 7 12 12 H 1.09006 * 117.51415 * 107.48594 * 11 10 8 13 13 C 1.50700 * 117.50082 * 252.50969 * 11 10 8 14 14 O 1.21280 * 119.99916 * 68.62438 * 13 11 10 15 15 N 1.34771 * 119.99873 * 248.62389 * 13 11 10 16 16 C 1.47023 * 125.64942 * 359.97438 * 15 13 11 17 17 C 1.54326 * 107.27284 * 178.96141 * 16 15 13 18 18 C 1.55164 * 102.94200 * 337.80693 * 17 16 15 19 19 H 1.08998 * 111.00397 * 277.39016 * 18 17 16 20 20 C 1.53001 * 111.00444 * 153.57761 * 18 17 16 21 21 N 1.46500 * 109.47347 * 66.45347 * 20 18 17 22 22 C 1.46497 * 119.99613 * 89.99822 * 21 20 18 23 23 C 1.36937 * 119.99905 * 270.00157 * 21 20 18 24 24 H 1.07994 * 119.99937 * 141.72968 * 23 21 20 25 25 C 1.38807 * 119.99875 * 321.72355 * 23 21 20 26 26 N 1.31624 * 119.99963 * 157.44707 * 25 23 21 27 27 Si 1.86797 * 120.00312 * 337.45155 * 25 23 21 28 28 H 1.48507 * 109.47040 * 95.66325 * 27 25 23 29 29 H 1.48500 * 109.47148 * 215.65973 * 27 25 23 30 30 H 1.48498 * 109.47231 * 335.66506 * 27 25 23 31 31 C 1.47430 * 125.64995 * 180.02562 * 15 13 11 32 32 H 1.08997 * 109.47314 * 270.21305 * 1 2 3 33 33 H 1.09008 * 109.47036 * 30.20672 * 1 2 3 34 34 H 1.08997 * 109.47196 * 150.20561 * 1 2 3 35 35 H 1.07995 * 120.00384 * 0.06689 * 3 2 1 36 36 H 1.08003 * 119.99644 * 179.83501 * 4 3 2 37 37 H 1.08002 * 120.00088 * 180.02562 * 5 4 3 38 38 H 1.07994 * 120.00448 * 180.02562 * 6 5 4 39 39 H 1.09002 * 117.49060 * 145.02981 * 10 8 7 40 40 H 1.08993 * 117.50321 * 0.02562 * 10 8 7 41 41 H 1.08999 * 109.88594 * 59.54408 * 16 15 13 42 42 H 1.08996 * 109.88595 * 298.37489 * 16 15 13 43 43 H 1.09001 * 110.72453 * 219.44978 * 17 16 15 44 44 H 1.09001 * 110.87480 * 96.23924 * 17 16 15 45 45 H 1.09001 * 109.46552 * 306.45251 * 20 18 17 46 46 H 1.09000 * 109.46789 * 186.45940 * 20 18 17 47 47 H 1.08998 * 109.46776 * 85.65395 * 22 21 20 48 48 H 1.09003 * 109.47702 * 325.64863 * 22 21 20 49 49 H 1.09006 * 109.46743 * 205.65203 * 22 21 20 50 50 H 0.96997 * 120.00093 * 179.97438 * 26 25 23 51 51 H 1.08991 * 110.37198 * 85.26687 * 31 15 13 52 52 H 1.09000 * 110.35990 * 322.94106 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2716 0.0000 -0.0059 6 6 3.5806 -1.1970 -0.0015 7 6 2.1981 -1.1969 0.0043 8 6 1.4445 -2.5020 0.0096 9 1 0.4438 -2.4654 0.4400 10 6 2.2538 -3.7847 0.2114 11 6 1.6736 -3.4548 -1.1654 12 1 2.3694 -3.1377 -1.9423 13 6 0.4984 -4.2708 -1.6390 14 8 -0.5781 -4.1577 -1.0920 15 7 0.6438 -5.1260 -2.6703 16 6 1.8863 -5.3603 -3.4207 17 6 1.5827 -6.4351 -4.4857 18 6 0.3363 -7.1556 -3.9069 19 1 0.6257 -7.9074 -3.1726 20 6 -0.5047 -7.7785 -5.0229 21 7 0.2506 -8.8619 -5.6569 22 6 0.1393 -10.2298 -5.1444 23 6 1.0605 -8.5960 -6.7286 24 1 2.0096 -9.1018 -6.8268 25 6 0.6616 -7.6763 -7.6887 26 7 1.5600 -7.0868 -8.4488 27 14 -1.1503 -7.2752 -7.9020 28 1 -1.4817 -6.0537 -7.1251 29 1 -1.4396 -7.0410 -9.3396 30 1 -1.9701 -8.4117 -7.4108 31 6 -0.4170 -5.9810 -3.2337 32 1 -0.3634 0.0038 1.0276 33 1 -0.3633 0.8882 -0.5171 34 1 -0.3633 -0.8918 -0.5106 35 1 1.6583 2.1327 0.0011 36 1 4.1204 2.1326 -0.0076 37 1 5.3517 -0.0001 -0.0093 38 1 4.1205 -2.1323 -0.0018 39 1 1.7854 -4.5919 0.7746 40 1 3.3314 -3.6849 0.3407 41 1 2.6651 -5.7163 -2.7464 42 1 2.2060 -4.4380 -3.9056 43 1 2.4181 -7.1283 -4.5832 44 1 1.3507 -5.9753 -5.4464 45 1 -0.7423 -7.0177 -5.7664 46 1 -1.4282 -8.1768 -4.6027 47 1 -0.7223 -10.7190 -5.5986 48 1 0.0133 -10.2032 -4.0620 49 1 1.0443 -10.7850 -5.3912 50 1 1.2812 -6.4444 -9.1200 51 1 -0.9969 -5.4286 -3.9730 52 1 -1.0664 -6.3517 -2.4407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713759346.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:23 Heat of formation + Delta-G solvation = 38.539694 kcal Electronic energy + Delta-G solvation = -29798.892009 eV Core-core repulsion = 25957.598398 eV Total energy + Delta-G solvation = -3841.293611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.53496 -39.54975 -37.89298 -36.30431 -35.49174 -33.06372 -31.96276 -31.30249 -30.72082 -29.09020 -27.16578 -26.68604 -25.83914 -24.28988 -23.93415 -22.29416 -21.64565 -21.21765 -20.39442 -19.88587 -18.86012 -17.57860 -16.90993 -16.62281 -15.90835 -15.66319 -15.33385 -15.12847 -15.04869 -14.42592 -14.12552 -14.01152 -13.94067 -13.40415 -13.31276 -13.30751 -13.08508 -12.64133 -12.48363 -12.42776 -12.36527 -12.31169 -12.08404 -12.05251 -11.77511 -11.45587 -11.39566 -11.13124 -10.98006 -10.87357 -10.77301 -10.63049 -10.49271 -10.33739 -10.16583 -9.77366 -9.74199 -9.56024 -8.99835 -8.68665 -8.55228 -8.44468 -6.84383 -6.04917 -3.45552 1.05503 1.15392 2.53774 3.05355 3.27070 3.42268 3.44497 3.49635 3.86686 4.27862 4.47920 4.50661 4.61501 4.64125 4.69854 4.77732 4.80342 4.92927 5.02717 5.09092 5.10317 5.22611 5.31139 5.39295 5.42319 5.46203 5.47015 5.52236 5.56023 5.65384 5.72113 5.76166 5.83399 5.86501 5.88012 5.97005 5.99109 6.20117 6.25406 6.27456 6.28069 6.28818 6.37831 6.45450 6.49473 6.56498 6.68028 6.70137 6.77444 6.87050 7.03921 7.69292 8.00941 8.26218 8.32937 8.94103 9.66611 10.08761 11.10335 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.002372 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.293900 B =11803.764108 C =12054.348012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.053 4.053 8 C -0.086 4.086 9 H 0.128 0.872 10 C -0.144 4.144 11 C -0.170 4.170 12 H 0.124 0.876 13 C 0.555 3.445 14 O -0.550 6.550 15 N -0.608 5.608 16 C 0.096 3.904 17 C -0.102 4.102 18 C -0.112 4.112 19 H 0.074 0.926 20 C 0.148 3.852 21 N -0.610 5.610 22 C 0.124 3.876 23 C -0.264 4.264 24 H 0.078 0.922 25 C 0.039 3.961 26 N -0.897 5.897 27 Si 0.870 3.130 28 H -0.285 1.285 29 H -0.301 1.301 30 H -0.270 1.270 31 C 0.108 3.892 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.041 0.959 47 H 0.006 0.994 48 H 0.026 0.974 49 H 0.045 0.955 50 H 0.263 0.737 51 H 0.066 0.934 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 12.531 18.327 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.053 4.053 8 C -0.104 4.104 9 H 0.146 0.854 10 C -0.181 4.181 11 C -0.191 4.191 12 H 0.142 0.858 13 C 0.344 3.656 14 O -0.429 6.429 15 N -0.341 5.341 16 C -0.027 4.027 17 C -0.140 4.140 18 C -0.134 4.134 19 H 0.093 0.907 20 C 0.022 3.978 21 N -0.334 5.334 22 C -0.021 4.021 23 C -0.393 4.393 24 H 0.096 0.904 25 C -0.162 4.162 26 N -0.538 5.538 27 Si 0.700 3.300 28 H -0.213 1.213 29 H -0.229 1.229 30 H -0.195 1.195 31 C -0.015 4.015 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.024 0.976 48 H 0.045 0.955 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.084 0.916 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.071 12.700 18.503 22.651 hybrid contribution -0.831 0.382 -0.449 1.019 sum 2.240 13.082 18.054 22.408 Atomic orbital electron populations 1.20879 0.91037 1.03385 1.02478 1.19759 0.96249 0.92333 0.99010 1.21029 0.94290 0.97372 1.01130 1.21134 0.94305 0.98076 1.00384 1.21098 0.99842 0.92414 1.00846 1.21066 0.93522 0.98401 1.00339 1.19000 0.93029 0.92721 1.00565 1.21087 1.00812 0.87843 1.00666 0.85430 1.23114 1.00265 0.98746 0.95963 1.22319 1.00215 1.02980 0.93596 0.85779 1.19198 0.88557 0.79028 0.78815 1.90667 1.28010 1.67238 1.57009 1.48481 1.12995 1.40558 1.32026 1.22280 0.86112 0.99950 0.94354 1.22477 0.98694 0.95742 0.97092 1.22995 0.96898 0.95178 0.98327 0.90720 1.21076 0.92497 0.91444 0.92829 1.44015 1.53723 1.01403 1.34258 1.21083 0.98797 0.86637 0.95564 1.18723 0.98256 1.24179 0.98142 0.90445 1.25438 0.96649 0.98055 0.96022 1.69867 1.32726 1.27345 1.23880 0.87045 0.88621 0.78188 0.76103 1.21323 1.22927 1.19478 1.22369 0.90477 0.91336 0.97302 0.91071 0.91579 0.90616 0.86060 0.86163 0.86057 0.85796 0.87756 0.87431 0.91763 0.91814 0.89479 0.89604 0.92581 0.94064 0.97579 0.95523 0.93649 0.92732 0.91620 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.33 36.01 0.34 -0.79 16 2 C -0.07 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 4 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 5 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 6 C -0.12 -1.09 9.30 -39.58 -0.37 -1.45 16 7 C -0.05 -0.56 5.61 -104.62 -0.59 -1.15 16 8 C -0.09 -0.95 4.65 -91.77 -0.43 -1.37 16 9 H 0.13 1.55 6.44 -51.93 -0.33 1.21 16 10 C -0.14 -1.41 9.56 -26.73 -0.26 -1.66 16 11 C -0.17 -2.04 5.17 -91.77 -0.47 -2.52 16 12 H 0.12 1.40 7.74 -51.93 -0.40 0.99 16 13 C 0.56 8.66 7.63 -10.99 -0.08 8.57 16 14 O -0.55 -10.13 16.51 5.56 0.09 -10.04 16 15 N -0.61 -9.56 3.33 -170.51 -0.57 -10.13 16 16 C 0.10 1.39 6.28 -3.06 -0.02 1.37 16 17 C -0.10 -1.82 5.40 -24.89 -0.13 -1.95 16 18 C -0.11 -1.96 3.29 -88.45 -0.29 -2.25 16 19 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.15 3.01 4.06 -4.04 -0.02 2.99 16 21 N -0.61 -13.67 2.41 -181.12 -0.44 -14.11 16 22 C 0.12 2.38 10.70 59.85 0.64 3.02 16 23 C -0.26 -6.88 8.94 -15.06 -0.13 -7.01 16 24 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 25 C 0.04 1.06 5.28 -17.43 -0.09 0.97 16 26 N -0.90 -25.78 13.97 55.49 0.78 -25.00 16 27 Si 0.87 21.50 25.09 -169.99 -4.26 17.23 16 28 H -0.29 -6.84 6.68 56.52 0.38 -6.46 16 29 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 30 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 31 C 0.11 1.80 6.38 -2.51 -0.02 1.78 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.53 8.09 -51.92 -0.42 0.11 16 34 H 0.07 0.82 6.65 -51.93 -0.35 0.47 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.97 6.02 -52.49 -0.32 0.65 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.11 0.83 6.18 -51.93 -0.32 0.51 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.87 8.06 -51.93 -0.42 0.46 16 43 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.09 1.80 8.00 -51.93 -0.42 1.39 16 45 H 0.06 1.26 3.35 -51.93 -0.17 1.09 16 46 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 47 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 48 H 0.03 0.44 8.10 -51.93 -0.42 0.02 16 49 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 50 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 51 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 52 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 LS Contribution 409.66 15.07 6.17 6.17 Total: -1.00 -30.50 409.66 -10.57 -41.07 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.62 Total: 2.01 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.72 Total: -7.21 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.23 Total: -49.24 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.26 Total: 17.23 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.50 -10.57 -41.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713759346.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.613 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds