Wall clock time and date at job start Wed Apr 1 2020 02:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 120.00061 * 2 1 4 4 C 1.38211 * 120.00144 * 180.27496 * 3 2 1 5 5 C 1.38265 * 119.99807 * 359.73892 * 4 3 2 6 6 C 1.38213 * 119.99894 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00148 * 179.74228 * 2 1 3 8 8 C 1.50703 * 119.99942 * 359.97438 * 7 2 1 9 9 H 1.08998 * 115.55110 * 334.06371 * 8 7 2 10 10 C 1.53002 * 117.52062 * 188.35364 * 8 7 2 11 11 C 1.52997 * 60.00033 * 252.52454 * 10 8 7 12 12 H 1.08995 * 117.52189 * 107.48382 * 11 10 8 13 13 C 1.50706 * 117.49674 * 252.51108 * 11 10 8 14 14 O 1.21281 * 120.00024 * 68.62257 * 13 11 10 15 15 N 1.34778 * 119.99590 * 248.62380 * 13 11 10 16 16 C 1.47018 * 125.65087 * 0.02562 * 15 13 11 17 17 C 1.54325 * 107.40280 * 180.94448 * 16 15 13 18 18 C 1.55550 * 102.75761 * 22.24418 * 17 16 15 19 19 H 1.08995 * 111.06112 * 82.56978 * 18 17 16 20 20 C 1.53002 * 110.96515 * 206.39925 * 18 17 16 21 21 N 1.46498 * 109.46992 * 287.19401 * 20 18 17 22 22 C 1.46493 * 120.00203 * 90.00226 * 21 20 18 23 23 C 1.36938 * 119.99808 * 269.99540 * 21 20 18 24 24 H 1.08001 * 120.00014 * 142.10804 * 23 21 20 25 25 C 1.38806 * 120.00279 * 322.11286 * 23 21 20 26 26 N 1.31622 * 120.00092 * 157.12172 * 25 23 21 27 27 Si 1.86802 * 120.00067 * 337.12090 * 25 23 21 28 28 H 1.48498 * 109.47146 * 95.74480 * 27 25 23 29 29 H 1.48506 * 109.47315 * 215.74543 * 27 25 23 30 30 H 1.48504 * 109.46794 * 335.74356 * 27 25 23 31 31 C 1.47429 * 125.64400 * 179.97438 * 15 13 11 32 32 H 1.08996 * 109.47256 * 270.25849 * 1 2 3 33 33 H 1.08996 * 109.47047 * 30.26151 * 1 2 3 34 34 H 1.08998 * 109.46751 * 150.25706 * 1 2 3 35 35 H 1.07999 * 119.99763 * 0.03470 * 3 2 1 36 36 H 1.07993 * 120.00396 * 179.76729 * 4 3 2 37 37 H 1.08002 * 119.99813 * 179.97438 * 5 4 3 38 38 H 1.07999 * 119.99963 * 179.97438 * 6 5 4 39 39 H 1.09000 * 117.49633 * 145.02992 * 10 8 7 40 40 H 1.08999 * 117.49552 * 0.02562 * 10 8 7 41 41 H 1.08993 * 109.88584 * 300.44234 * 16 15 13 42 42 H 1.09006 * 109.88096 * 61.45439 * 16 15 13 43 43 H 1.09000 * 110.71791 * 140.63152 * 17 16 15 44 44 H 1.08991 * 110.72532 * 263.90988 * 17 16 15 45 45 H 1.08999 * 109.47097 * 47.18981 * 20 18 17 46 46 H 1.08998 * 109.47204 * 167.18947 * 20 18 17 47 47 H 1.08999 * 109.47655 * 89.95787 * 22 21 20 48 48 H 1.09005 * 109.47174 * 209.95893 * 22 21 20 49 49 H 1.09000 * 109.47259 * 329.95264 * 22 21 20 50 50 H 0.97008 * 119.99829 * 179.97438 * 26 25 23 51 51 H 1.09001 * 110.36288 * 274.74496 * 31 15 13 52 52 H 1.08993 * 110.36892 * 36.95350 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1974 -0.0057 5 6 4.2718 -0.0001 -0.0060 6 6 3.5807 -1.1970 0.0000 7 6 2.1982 -1.1970 0.0054 8 6 1.4447 -2.5021 0.0118 9 1 0.4439 -2.4650 0.4422 10 6 2.2539 -3.7846 0.2147 11 6 1.6739 -3.4559 -1.1623 12 1 2.3696 -3.1394 -1.9394 13 6 0.4987 -4.2722 -1.6353 14 8 -0.5779 -4.1587 -1.0885 15 7 0.6441 -5.1284 -2.6659 16 6 1.8868 -5.3641 -3.4153 17 6 1.5738 -6.4023 -4.5134 18 6 0.0333 -6.2693 -4.6827 19 1 -0.2181 -5.4367 -5.3396 20 6 -0.5753 -7.5746 -5.1992 21 7 -0.2268 -7.7508 -6.6112 22 6 0.9993 -8.4629 -6.9797 23 6 -1.0471 -7.2500 -7.5865 24 1 -0.6219 -6.8154 -8.4792 25 6 -2.4252 -7.3007 -7.4280 26 7 -3.1950 -6.4621 -8.0888 27 14 -3.1873 -8.5589 -6.2767 28 1 -3.4293 -7.9345 -4.9513 29 1 -4.4757 -9.0322 -6.8436 30 1 -2.2626 -9.7104 -6.1201 31 6 -0.4164 -5.9846 -3.2278 32 1 -0.3633 0.0046 1.0276 33 1 -0.3633 0.8876 -0.5179 34 1 -0.3633 -0.8923 -0.5098 35 1 1.6583 2.1326 0.0006 36 1 4.1204 2.1326 -0.0095 37 1 5.3518 0.0000 -0.0109 38 1 4.1207 -2.1323 -0.0007 39 1 1.7855 -4.5913 0.7786 40 1 3.3316 -3.6845 0.3440 41 1 2.2273 -4.4342 -3.8706 42 1 2.6551 -5.7522 -2.7465 43 1 2.0888 -6.1502 -5.4404 44 1 1.8414 -7.4058 -4.1830 45 1 -0.1839 -8.4117 -4.6212 46 1 -1.6596 -7.5363 -5.0946 47 1 0.7835 -9.5258 -7.0881 48 1 1.3774 -8.0708 -7.9238 49 1 1.7492 -8.3220 -6.2014 50 1 -4.1581 -6.4978 -7.9783 51 1 -0.4910 -6.9149 -2.6647 52 1 -1.3716 -5.4598 -3.2201 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713759348.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:29 Heat of formation + Delta-G solvation = 38.936304 kcal Electronic energy + Delta-G solvation = -29627.303369 eV Core-core repulsion = 25786.026957 eV Total energy + Delta-G solvation = -3841.276413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.58681 -39.60705 -37.96833 -36.34451 -35.52661 -33.08438 -32.07919 -31.22422 -30.74143 -29.35528 -27.18087 -26.68816 -25.89395 -24.31347 -23.97690 -22.46853 -21.67685 -21.18548 -20.44141 -20.05017 -18.95369 -17.66872 -16.84439 -16.66095 -15.97098 -15.78368 -15.24926 -15.20882 -15.06731 -14.76896 -14.24869 -14.02974 -13.71873 -13.46887 -13.40956 -13.31138 -13.13331 -12.84873 -12.48908 -12.40531 -12.36995 -12.34513 -12.30938 -12.08773 -11.71111 -11.51393 -11.42460 -11.20244 -11.12342 -10.89611 -10.83137 -10.75672 -10.67276 -10.31146 -10.24963 -9.85505 -9.76306 -9.53005 -9.02991 -8.71843 -8.54322 -8.51345 -6.83834 -6.02135 -3.43525 1.02280 1.12389 2.48793 2.97801 3.30245 3.37920 3.46103 3.50715 3.81593 4.21903 4.44915 4.50511 4.57005 4.58565 4.66648 4.73850 4.77330 4.82001 4.90247 4.95938 5.08619 5.11891 5.25105 5.27250 5.35969 5.37938 5.43501 5.46635 5.52414 5.58639 5.63279 5.66449 5.78302 5.79569 5.84070 5.97920 5.98718 6.04831 6.11474 6.19691 6.24225 6.24535 6.25434 6.30332 6.42283 6.42966 6.58134 6.67125 6.70629 6.74421 6.91187 7.61097 8.03335 8.21242 8.35690 8.96236 9.68836 10.09603 11.13472 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017328 B = 0.002285 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.475245 B =12250.433594 C =12627.965209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.054 4.054 8 C -0.085 4.085 9 H 0.129 0.871 10 C -0.145 4.145 11 C -0.170 4.170 12 H 0.124 0.876 13 C 0.555 3.445 14 O -0.544 6.544 15 N -0.610 5.610 16 C 0.101 3.899 17 C -0.119 4.119 18 C -0.113 4.113 19 H 0.093 0.907 20 C 0.150 3.850 21 N -0.609 5.609 22 C 0.123 3.877 23 C -0.271 4.271 24 H 0.078 0.922 25 C 0.037 3.963 26 N -0.898 5.898 27 Si 0.875 3.125 28 H -0.284 1.284 29 H -0.301 1.301 30 H -0.270 1.270 31 C 0.107 3.893 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.056 0.944 47 H 0.006 0.994 48 H 0.041 0.959 49 H 0.031 0.969 50 H 0.264 0.736 51 H 0.064 0.936 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.302 10.356 18.229 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.143 4.143 6 C -0.134 4.134 7 C -0.054 4.054 8 C -0.103 4.103 9 H 0.146 0.854 10 C -0.182 4.182 11 C -0.191 4.191 12 H 0.142 0.858 13 C 0.344 3.656 14 O -0.422 6.422 15 N -0.343 5.343 16 C -0.022 4.022 17 C -0.157 4.157 18 C -0.135 4.135 19 H 0.112 0.888 20 C 0.024 3.976 21 N -0.333 5.333 22 C -0.022 4.022 23 C -0.400 4.400 24 H 0.096 0.904 25 C -0.164 4.164 26 N -0.539 5.539 27 Si 0.705 3.295 28 H -0.212 1.212 29 H -0.228 1.228 30 H -0.195 1.195 31 C -0.015 4.015 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.024 0.976 48 H 0.060 0.940 49 H 0.050 0.950 50 H 0.073 0.927 51 H 0.083 0.917 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.564 10.491 18.486 26.345 hybrid contribution -0.431 -0.605 0.427 0.857 sum 15.133 9.887 18.914 26.162 Atomic orbital electron populations 1.20890 0.90950 1.03508 1.02528 1.19778 0.96309 0.92318 0.98800 1.21042 0.94287 0.97423 1.01016 1.21138 0.94310 0.98074 1.00332 1.21090 0.99792 0.92425 1.00972 1.21044 0.93500 0.98338 1.00509 1.18993 0.93010 0.92711 1.00650 1.21092 1.00867 0.87823 1.00544 0.85363 1.23119 1.00232 0.98886 0.95939 1.22312 1.00178 1.03079 0.93557 0.85831 1.19208 0.88605 0.78897 0.78924 1.90693 1.27907 1.67074 1.56553 1.48452 1.12744 1.40777 1.32297 1.22099 0.86456 0.99629 0.93992 1.22729 0.97492 0.97924 0.97551 1.23162 0.94043 1.02678 0.93597 0.88822 1.21060 0.98460 0.92509 0.85602 1.43990 1.24483 1.64030 1.00768 1.21129 0.88385 0.94415 0.98284 1.18762 0.86916 1.33478 1.00836 0.90443 1.25478 0.96346 0.97285 0.97308 1.69881 1.04718 1.34865 1.44389 0.86960 0.78321 0.84051 0.80191 1.21166 1.22848 1.19456 1.22391 0.91355 0.93619 0.94168 0.91030 0.91487 0.90564 0.86004 0.86153 0.86100 0.85877 0.87756 0.87454 0.91659 0.91733 0.89813 0.91039 0.94029 0.92616 0.97611 0.94012 0.95001 0.92659 0.91739 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.33 36.01 0.34 -0.81 16 2 C -0.07 -0.72 5.88 -104.62 -0.62 -1.34 16 3 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 4 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 6 C -0.12 -1.02 9.30 -39.59 -0.37 -1.39 16 7 C -0.05 -0.54 5.61 -104.62 -0.59 -1.13 16 8 C -0.08 -0.90 4.65 -91.77 -0.43 -1.33 16 9 H 0.13 1.53 6.44 -51.93 -0.33 1.20 16 10 C -0.14 -1.30 9.56 -26.73 -0.26 -1.56 16 11 C -0.17 -1.91 5.17 -91.77 -0.47 -2.38 16 12 H 0.12 1.25 7.67 -51.93 -0.40 0.85 16 13 C 0.56 8.39 7.63 -10.98 -0.08 8.31 16 14 O -0.54 -10.10 16.51 5.56 0.09 -10.01 16 15 N -0.61 -9.01 3.33 -170.51 -0.57 -9.58 16 16 C 0.10 1.21 6.30 -3.07 -0.02 1.19 16 17 C -0.12 -1.62 5.05 -24.68 -0.12 -1.74 16 18 C -0.11 -1.99 3.27 -88.25 -0.29 -2.28 16 19 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 20 C 0.15 3.07 4.02 -4.04 -0.02 3.05 16 21 N -0.61 -13.87 2.44 -181.13 -0.44 -14.31 16 22 C 0.12 2.32 10.51 59.84 0.63 2.95 16 23 C -0.27 -7.41 9.90 -15.06 -0.15 -7.56 16 24 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 25 C 0.04 1.05 5.29 -17.43 -0.09 0.95 16 26 N -0.90 -27.19 13.97 55.49 0.78 -26.42 16 27 Si 0.87 22.05 25.09 -169.99 -4.26 17.79 16 28 H -0.28 -6.95 6.68 56.52 0.38 -6.57 16 29 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 30 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 31 C 0.11 1.79 6.38 -2.52 -0.02 1.78 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.08 0.84 6.65 -51.93 -0.35 0.49 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.12 0.86 6.02 -52.49 -0.32 0.54 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.11 0.73 6.18 -51.93 -0.32 0.40 16 41 H 0.07 0.72 7.98 -51.93 -0.41 0.31 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 44 H 0.07 0.90 7.59 -51.93 -0.39 0.51 16 45 H 0.04 0.76 7.91 -51.93 -0.41 0.35 16 46 H 0.06 1.29 3.36 -51.93 -0.17 1.11 16 47 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 48 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16 49 H 0.03 0.49 6.41 -51.93 -0.33 0.16 16 50 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 51 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 52 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 407.62 15.07 6.14 6.14 Total: -1.00 -32.54 407.62 -10.49 -43.04 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.50 Total: 0.86 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -3.73 Total: -7.51 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.23 Total: -50.31 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.26 Total: 17.79 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.54 -10.49 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713759348.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.974 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds