Wall clock time and date at job start Wed Apr 1 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 115.56025 * 2 1 4 4 C 1.38237 * 119.99954 * 80.65133 * 3 2 1 5 5 C 1.38237 * 119.99686 * 179.78614 * 4 3 2 6 6 C 1.38239 * 119.99902 * 0.44313 * 5 4 3 7 7 C 1.38234 * 120.00161 * 359.81337 * 6 5 4 8 8 C 1.38237 * 119.99623 * 260.92256 * 3 2 1 9 9 C 1.53000 * 117.50139 * 214.31257 * 2 1 3 10 10 C 1.52999 * 117.50042 * 145.68915 * 2 1 3 11 11 H 1.09001 * 117.49741 * 359.97438 * 10 2 1 12 12 C 1.50705 * 117.49690 * 214.98117 * 10 2 1 13 13 O 1.21278 * 119.99900 * 288.34266 * 12 10 2 14 14 N 1.34776 * 119.99960 * 108.35111 * 12 10 2 15 15 C 1.46935 * 120.63099 * 359.71401 * 14 12 10 16 16 C 1.53622 * 108.53932 * 126.36811 * 15 14 12 17 17 C 1.53043 * 109.23959 * 54.85978 * 16 15 14 18 18 C 1.53041 * 109.53851 * 298.50451 * 17 16 15 19 19 H 1.08998 * 109.49967 * 301.41511 * 18 17 16 20 20 C 1.52997 * 109.49597 * 181.31547 * 18 17 16 21 21 N 1.46502 * 109.47055 * 65.16852 * 20 18 17 22 22 C 1.36935 * 120.00027 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00575 * 359.97438 * 22 21 20 24 24 C 1.38818 * 120.00094 * 179.97438 * 22 21 20 25 25 N 1.31616 * 119.99903 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00013 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47434 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46968 * 120.00458 * 26 24 22 29 29 H 1.48503 * 109.47223 * 240.00348 * 26 24 22 30 30 C 1.46926 * 120.62979 * 179.97438 * 14 12 10 31 31 H 1.09001 * 109.47312 * 274.31469 * 1 2 3 32 32 H 1.09006 * 109.47338 * 34.31460 * 1 2 3 33 33 H 1.08997 * 109.47154 * 154.31314 * 1 2 3 34 34 H 1.08000 * 119.99967 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.99707 * 180.27300 * 5 4 3 36 36 H 1.07998 * 119.99651 * 179.83360 * 6 5 4 37 37 H 1.07994 * 120.00356 * 180.02562 * 7 6 5 38 38 H 1.07994 * 120.00265 * 359.97438 * 8 3 2 39 39 H 1.08995 * 117.50043 * 145.02238 * 9 2 1 40 40 H 1.09000 * 117.49514 * 359.97438 * 9 2 1 41 41 H 1.09001 * 109.58695 * 246.20561 * 15 14 12 42 42 H 1.09001 * 109.58529 * 6.62881 * 15 14 12 43 43 H 1.09000 * 109.63959 * 294.86680 * 16 15 14 44 44 H 1.08996 * 109.42984 * 174.72380 * 16 15 14 45 45 H 1.09003 * 109.45551 * 178.48567 * 17 16 15 46 46 H 1.09000 * 109.44877 * 58.52611 * 17 16 15 47 47 H 1.08998 * 109.47145 * 185.15963 * 20 18 17 48 48 H 1.08995 * 109.47408 * 305.16384 * 20 18 17 49 49 H 0.96998 * 119.99940 * 359.97438 * 21 20 18 50 50 H 0.96999 * 120.00423 * 179.97438 * 25 24 22 51 51 H 1.08997 * 109.58286 * 353.36755 * 30 14 12 52 52 H 1.08996 * 109.58637 * 113.65340 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1802 1.3596 0.0000 4 6 2.3030 2.0670 1.1813 5 6 2.9034 3.3122 1.1819 6 6 3.3728 3.8538 -0.0002 7 6 3.2452 3.1486 -1.1822 8 6 2.6488 1.9015 -1.1822 9 6 2.2365 -1.1209 -0.7650 10 6 2.2364 -1.1210 0.7650 11 1 1.6112 -1.8582 1.2686 12 6 3.5293 -0.7810 1.4608 13 8 4.5319 -0.5748 0.8105 14 7 3.5712 -0.7062 2.8059 15 6 2.3634 -0.9474 3.6071 16 6 2.6779 -2.0293 4.6514 17 6 3.8989 -1.6012 5.4689 18 6 5.1098 -1.4587 4.5439 19 1 5.2982 -2.4079 4.0424 20 6 6.3372 -1.0627 5.3669 21 7 6.6815 -2.1512 6.2850 22 6 7.7527 -2.0226 7.1283 23 1 8.3440 -1.1189 7.1164 24 6 8.0787 -3.0538 7.9986 25 7 7.3584 -4.1553 8.0129 26 14 9.5403 -2.8786 9.1485 27 1 10.1802 -1.5553 8.9377 28 1 9.0786 -2.9862 10.5559 29 1 10.5237 -3.9550 8.8665 30 6 4.8242 -0.3764 3.4986 31 1 -0.3634 0.0773 1.0247 32 1 -0.3634 0.8488 -0.5794 33 1 -0.3633 -0.9261 -0.4454 34 1 1.9325 1.6456 2.1041 35 1 3.0033 3.8629 2.1055 36 1 3.8394 4.8278 0.0000 37 1 3.6122 3.5716 -2.1056 38 1 2.5493 1.3505 -2.1057 39 1 3.1715 -0.8751 -1.2682 40 1 1.6112 -1.8586 -1.2680 41 1 2.0677 -0.0261 4.1089 42 1 1.5563 -1.2877 2.9582 43 1 2.8893 -2.9731 4.1489 44 1 1.8217 -2.1532 5.3143 45 1 4.1090 -2.3538 6.2289 46 1 3.6957 -0.6451 5.9512 47 1 7.1768 -0.8721 4.6985 48 1 6.1161 -0.1614 5.9386 49 1 6.1503 -2.9626 6.2960 50 1 7.5863 -4.8760 8.6207 51 1 5.6413 -0.3399 2.7781 52 1 4.7264 0.5917 3.9896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714075049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:19 Heat of formation + Delta-G solvation = 18.918883 kcal Electronic energy + Delta-G solvation = -30403.661244 eV Core-core repulsion = 26561.516811 eV Total energy + Delta-G solvation = -3842.144433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.85846 -39.35358 -37.91469 -36.69598 -34.92544 -32.72613 -31.65822 -31.05496 -30.90047 -29.97652 -28.91900 -26.03944 -25.51578 -23.74203 -23.35682 -22.70960 -22.33990 -21.67053 -20.14231 -19.61576 -18.77567 -17.56779 -17.03008 -16.79693 -15.93302 -15.47543 -15.11612 -14.99277 -14.64776 -14.41618 -14.29229 -14.12662 -14.04362 -13.64919 -13.54351 -13.38472 -13.11195 -13.03079 -12.90333 -12.76599 -12.48611 -12.42644 -12.12826 -11.95622 -11.77836 -11.32729 -11.25421 -11.03888 -10.89088 -10.82815 -10.60931 -10.58353 -10.32166 -10.22987 -10.14373 -9.96212 -9.73106 -9.58727 -9.04730 -8.87715 -8.85916 -8.51238 -6.89294 -5.74877 -3.02911 1.18806 1.27099 2.47177 2.96499 3.44627 3.50121 3.50774 3.52623 3.62280 4.18977 4.35816 4.46367 4.61025 4.62945 4.74834 4.80806 4.85107 4.92328 4.96264 5.01206 5.07922 5.21345 5.26975 5.30789 5.35320 5.38548 5.47969 5.49661 5.51890 5.54620 5.59565 5.64870 5.73578 5.82578 5.87740 5.88285 5.90624 5.91381 6.04032 6.12821 6.20289 6.25323 6.32418 6.37071 6.42966 6.48893 6.60603 6.69064 6.82846 6.84642 6.92855 7.46637 7.72836 8.25536 8.44309 9.55536 10.13691 10.48594 11.48278 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017741 B = 0.002434 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.886279 B =11502.009926 C =12234.175564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.064 4.064 3 C -0.048 4.048 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.120 4.120 8 C -0.103 4.103 9 C -0.135 4.135 10 C -0.179 4.179 11 H 0.126 0.874 12 C 0.547 3.453 13 O -0.537 6.537 14 N -0.603 5.603 15 C 0.108 3.892 16 C -0.136 4.136 17 C -0.111 4.111 18 C -0.106 4.106 19 H 0.073 0.927 20 C 0.160 3.840 21 N -0.731 5.731 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.122 3.878 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.384 0.616 50 H 0.254 0.746 51 H 0.090 0.910 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.240 11.761 -18.433 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.065 4.065 3 C -0.048 4.048 4 C -0.122 4.122 5 C -0.136 4.136 6 C -0.139 4.139 7 C -0.138 4.138 8 C -0.121 4.121 9 C -0.172 4.172 10 C -0.200 4.200 11 H 0.144 0.856 12 C 0.335 3.665 13 O -0.413 6.413 14 N -0.336 5.336 15 C -0.015 4.015 16 C -0.174 4.174 17 C -0.148 4.148 18 C -0.125 4.125 19 H 0.091 0.909 20 C 0.032 3.968 21 N -0.375 5.375 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.001 4.001 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.218 0.782 50 H 0.064 0.936 51 H 0.108 0.892 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.548 11.952 -18.692 28.919 hybrid contribution 0.690 -0.390 0.949 1.236 sum -17.858 11.562 -17.743 27.703 Atomic orbital electron populations 1.21363 0.90448 1.02548 1.02472 1.20200 0.94541 0.87872 1.03892 1.18918 0.98585 0.93627 0.93645 1.20922 0.99188 0.94725 0.97361 1.21109 0.98527 0.95768 0.98146 1.21143 0.99923 0.99984 0.92841 1.21099 0.99510 0.95027 0.98177 1.20925 0.98131 0.95516 0.97548 1.23220 1.02854 0.99373 0.91780 1.22481 0.98140 1.03340 0.96037 0.85600 1.19441 0.88878 0.76467 0.81739 1.90685 1.35933 1.49926 1.64798 1.47977 1.10965 1.69483 1.05164 1.21881 0.86821 0.99044 0.93784 1.22031 0.99287 0.98413 0.97643 1.21523 0.93115 1.02297 0.97896 1.21656 0.96255 0.98926 0.95711 0.90872 1.20582 0.92732 0.92098 0.91400 1.42353 1.34999 1.16834 1.43312 1.19286 1.04560 1.00592 1.12312 0.91153 1.24733 0.99544 0.96487 1.00363 1.69666 1.41140 1.06481 1.41057 0.86116 0.82239 0.77208 0.80648 1.20563 1.21910 1.21894 1.21594 0.86020 0.97521 0.94945 0.91742 0.91519 0.91694 0.86485 0.86130 0.86239 0.86159 0.86169 0.87251 0.87636 0.91458 0.90073 0.91531 0.90936 0.90294 0.92125 0.96234 0.96213 0.78237 0.93616 0.89172 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.84 37.15 0.37 -0.33 16 2 C -0.06 -0.56 2.19 -155.66 -0.34 -0.90 16 3 C -0.05 -0.50 4.27 -104.62 -0.45 -0.95 16 4 C -0.10 -1.11 8.82 -39.58 -0.35 -1.46 16 5 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 6 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 7 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 8 C -0.10 -1.05 9.34 -39.58 -0.37 -1.42 16 9 C -0.14 -1.23 9.02 -26.73 -0.24 -1.48 16 10 C -0.18 -1.80 4.74 -91.77 -0.43 -2.23 16 11 H 0.13 1.02 6.73 -51.93 -0.35 0.67 16 12 C 0.55 7.54 5.81 -10.98 -0.06 7.48 16 13 O -0.54 -9.50 15.63 5.56 0.09 -9.41 16 14 N -0.60 -7.75 2.97 -172.52 -0.51 -8.26 16 15 C 0.11 1.07 6.38 -3.48 -0.02 1.05 16 16 C -0.14 -1.54 6.10 -26.39 -0.16 -1.71 16 17 C -0.11 -1.65 5.05 -26.69 -0.13 -1.78 16 18 C -0.11 -1.76 2.37 -90.52 -0.21 -1.98 16 19 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 20 C 0.16 3.29 5.65 -4.04 -0.02 3.26 16 21 N -0.73 -18.71 5.32 -59.91 -0.32 -19.03 16 22 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 23 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 24 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 25 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 26 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 C 0.12 1.80 5.71 -3.73 -0.02 1.78 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.04 7.94 -52.49 -0.42 0.63 16 39 H 0.11 1.21 7.55 -51.93 -0.39 0.82 16 40 H 0.11 0.71 8.05 -51.93 -0.42 0.29 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.63 5.58 -51.93 -0.29 0.34 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.40 7.16 -51.93 -0.37 1.03 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.38 10.26 6.86 -40.82 -0.28 9.98 16 50 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.09 1.51 7.00 -51.93 -0.36 1.15 16 52 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 413.27 15.07 6.23 6.23 Total: -1.00 -33.74 413.27 -11.46 -45.21 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.75 Total: 8.19 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.90 Total: -12.84 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.11 Total: -55.06 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.74 -11.46 -45.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714075049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.124 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds