Wall clock time and date at job start Wed Apr 1 2020 02:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 115.56025 * 2 1 4 4 C 1.38237 * 119.99954 * 80.65133 * 3 2 1 5 5 C 1.38237 * 119.99686 * 179.78614 * 4 3 2 6 6 C 1.38239 * 119.99902 * 0.44313 * 5 4 3 7 7 C 1.38234 * 120.00161 * 359.81337 * 6 5 4 8 8 C 1.38237 * 119.99623 * 260.92256 * 3 2 1 9 9 C 1.53000 * 117.50139 * 214.31257 * 2 1 3 10 10 C 1.52999 * 117.50042 * 145.68915 * 2 1 3 11 11 H 1.09001 * 117.49741 * 359.97438 * 10 2 1 12 12 C 1.50705 * 117.49690 * 214.98117 * 10 2 1 13 13 O 1.21278 * 119.99900 * 288.34266 * 12 10 2 14 14 N 1.34776 * 119.99960 * 108.35111 * 12 10 2 15 15 C 1.46935 * 120.63099 * 359.71401 * 14 12 10 16 16 C 1.53622 * 108.53932 * 126.36811 * 15 14 12 17 17 C 1.53043 * 109.23959 * 54.85978 * 16 15 14 18 18 C 1.53041 * 109.53851 * 298.50451 * 17 16 15 19 19 H 1.08998 * 109.49967 * 301.41511 * 18 17 16 20 20 C 1.52997 * 109.49597 * 181.31547 * 18 17 16 21 21 N 1.46502 * 109.47055 * 65.16852 * 20 18 17 22 22 C 1.36935 * 120.00027 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00575 * 359.97438 * 22 21 20 24 24 C 1.38818 * 120.00094 * 179.97438 * 22 21 20 25 25 N 1.31616 * 119.99903 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00013 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47434 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46968 * 120.00458 * 26 24 22 29 29 H 1.48503 * 109.47223 * 240.00348 * 26 24 22 30 30 C 1.46926 * 120.62979 * 179.97438 * 14 12 10 31 31 H 1.09001 * 109.47312 * 274.31469 * 1 2 3 32 32 H 1.09006 * 109.47338 * 34.31460 * 1 2 3 33 33 H 1.08997 * 109.47154 * 154.31314 * 1 2 3 34 34 H 1.08000 * 119.99967 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.99707 * 180.27300 * 5 4 3 36 36 H 1.07998 * 119.99651 * 179.83360 * 6 5 4 37 37 H 1.07994 * 120.00356 * 180.02562 * 7 6 5 38 38 H 1.07994 * 120.00265 * 359.97438 * 8 3 2 39 39 H 1.08995 * 117.50043 * 145.02238 * 9 2 1 40 40 H 1.09000 * 117.49514 * 359.97438 * 9 2 1 41 41 H 1.09001 * 109.58695 * 246.20561 * 15 14 12 42 42 H 1.09001 * 109.58529 * 6.62881 * 15 14 12 43 43 H 1.09000 * 109.63959 * 294.86680 * 16 15 14 44 44 H 1.08996 * 109.42984 * 174.72380 * 16 15 14 45 45 H 1.09003 * 109.45551 * 178.48567 * 17 16 15 46 46 H 1.09000 * 109.44877 * 58.52611 * 17 16 15 47 47 H 1.08998 * 109.47145 * 185.15963 * 20 18 17 48 48 H 1.08995 * 109.47408 * 305.16384 * 20 18 17 49 49 H 0.96998 * 119.99940 * 359.97438 * 21 20 18 50 50 H 0.96999 * 120.00423 * 179.97438 * 25 24 22 51 51 H 1.08997 * 109.58286 * 353.36755 * 30 14 12 52 52 H 1.08996 * 109.58637 * 113.65340 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1802 1.3596 0.0000 4 6 2.3030 2.0670 1.1813 5 6 2.9034 3.3122 1.1819 6 6 3.3728 3.8538 -0.0002 7 6 3.2452 3.1486 -1.1822 8 6 2.6488 1.9015 -1.1822 9 6 2.2365 -1.1209 -0.7650 10 6 2.2364 -1.1210 0.7650 11 1 1.6112 -1.8582 1.2686 12 6 3.5293 -0.7810 1.4608 13 8 4.5319 -0.5748 0.8105 14 7 3.5712 -0.7062 2.8059 15 6 2.3634 -0.9474 3.6071 16 6 2.6779 -2.0293 4.6514 17 6 3.8989 -1.6012 5.4689 18 6 5.1098 -1.4587 4.5439 19 1 5.2982 -2.4079 4.0424 20 6 6.3372 -1.0627 5.3669 21 7 6.6815 -2.1512 6.2850 22 6 7.7527 -2.0226 7.1283 23 1 8.3440 -1.1189 7.1164 24 6 8.0787 -3.0538 7.9986 25 7 7.3584 -4.1553 8.0129 26 14 9.5403 -2.8786 9.1485 27 1 10.1802 -1.5553 8.9377 28 1 9.0786 -2.9862 10.5559 29 1 10.5237 -3.9550 8.8665 30 6 4.8242 -0.3764 3.4986 31 1 -0.3634 0.0773 1.0247 32 1 -0.3634 0.8488 -0.5794 33 1 -0.3633 -0.9261 -0.4454 34 1 1.9325 1.6456 2.1041 35 1 3.0033 3.8629 2.1055 36 1 3.8394 4.8278 0.0000 37 1 3.6122 3.5716 -2.1056 38 1 2.5493 1.3505 -2.1057 39 1 3.1715 -0.8751 -1.2682 40 1 1.6112 -1.8586 -1.2680 41 1 2.0677 -0.0261 4.1089 42 1 1.5563 -1.2877 2.9582 43 1 2.8893 -2.9731 4.1489 44 1 1.8217 -2.1532 5.3143 45 1 4.1090 -2.3538 6.2289 46 1 3.6957 -0.6451 5.9512 47 1 7.1768 -0.8721 4.6985 48 1 6.1161 -0.1614 5.9386 49 1 6.1503 -2.9626 6.2960 50 1 7.5863 -4.8760 8.6207 51 1 5.6413 -0.3399 2.7781 52 1 4.7264 0.5917 3.9896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714075049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:18 Heat of formation + Delta-G solvation = 0.818641 kcal Electronic energy + Delta-G solvation = -30404.446130 eV Core-core repulsion = 26561.516811 eV Total energy + Delta-G solvation = -3842.929319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.76484 -40.26126 -38.96955 -37.62128 -36.60869 -34.38898 -32.92351 -31.88513 -31.78565 -31.48337 -29.50538 -27.50989 -26.72809 -25.17801 -24.05314 -23.95661 -23.24123 -22.93998 -21.25031 -20.57585 -19.69269 -19.21942 -18.43051 -17.61728 -16.99567 -16.58978 -16.44670 -15.93741 -15.80859 -15.61130 -15.43443 -15.32720 -15.15093 -15.00257 -14.73108 -14.26598 -14.21884 -13.89086 -13.82490 -13.65603 -13.62662 -13.51654 -13.28866 -13.03031 -12.83051 -12.78027 -12.65401 -12.15577 -12.11488 -12.04284 -11.93758 -11.91639 -11.72906 -11.57708 -11.40950 -11.29681 -10.96576 -10.94109 -10.65238 -9.80312 -9.64449 -9.57980 -9.02459 -7.97630 -5.26556 0.44703 0.51498 1.45458 1.46565 1.50727 1.56797 1.96250 2.54235 2.74597 2.88097 3.35651 3.41021 3.62765 3.73229 3.78198 3.79606 3.89289 3.96612 4.04925 4.09701 4.15818 4.18399 4.27141 4.29889 4.39776 4.46054 4.54791 4.58499 4.66023 4.70787 4.75055 4.78185 4.85720 4.86359 4.87465 4.94956 4.96356 4.98993 5.10961 5.15741 5.18336 5.18882 5.23118 5.37388 5.39026 5.45438 5.49395 5.54490 5.59346 5.62847 5.67788 6.12769 6.24691 6.46213 7.21580 7.31081 8.05644 8.30505 9.26200 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017741 B = 0.002434 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.886279 B =11502.009926 C =12234.175564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.050 4.050 3 C -0.061 4.061 4 C -0.118 4.118 5 C -0.132 4.132 6 C -0.133 4.133 7 C -0.130 4.130 8 C -0.119 4.119 9 C -0.137 4.137 10 C -0.185 4.185 11 H 0.154 0.846 12 C 0.541 3.459 13 O -0.586 6.586 14 N -0.602 5.602 15 C 0.107 3.893 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.092 4.092 19 H 0.049 0.951 20 C 0.159 3.841 21 N -0.741 5.741 22 C -0.246 4.246 23 H 0.074 0.926 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.975 3.025 27 H -0.267 1.267 28 H -0.290 1.290 29 H -0.293 1.293 30 C 0.132 3.868 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.083 0.917 40 H 0.135 0.865 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.057 0.943 44 H 0.099 0.901 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.010 0.990 48 H 0.028 0.972 49 H 0.375 0.625 50 H 0.252 0.748 51 H 0.064 0.936 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.494 12.549 -18.665 31.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.051 4.051 3 C -0.061 4.061 4 C -0.136 4.136 5 C -0.150 4.150 6 C -0.151 4.151 7 C -0.148 4.148 8 C -0.137 4.137 9 C -0.174 4.174 10 C -0.206 4.206 11 H 0.172 0.828 12 C 0.331 3.669 13 O -0.466 6.466 14 N -0.333 5.333 15 C -0.014 4.014 16 C -0.166 4.166 17 C -0.144 4.144 18 C -0.111 4.111 19 H 0.068 0.932 20 C 0.032 3.968 21 N -0.384 5.384 22 C -0.378 4.378 23 H 0.092 0.908 24 C -0.267 4.267 25 N -0.620 5.620 26 Si 0.803 3.197 27 H -0.192 1.192 28 H -0.217 1.217 29 H -0.221 1.221 30 C 0.008 3.992 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.101 0.899 40 H 0.153 0.847 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.028 0.972 48 H 0.046 0.954 49 H 0.207 0.793 50 H 0.061 0.939 51 H 0.083 0.917 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.832 12.772 -18.930 30.910 hybrid contribution 1.437 -0.580 0.972 1.829 sum -19.396 12.192 -17.957 29.108 Atomic orbital electron populations 1.21405 0.88030 1.03554 1.03458 1.20295 0.95922 0.86508 1.02330 1.19209 0.98673 0.94564 0.93664 1.21090 0.99670 0.95063 0.97748 1.21385 0.98626 0.96083 0.98907 1.21434 1.00000 1.00850 0.92821 1.21408 0.99288 0.95078 0.99040 1.21181 0.98433 0.95993 0.98133 1.23294 1.02421 1.00526 0.91192 1.22538 0.96701 1.04950 0.96403 0.82822 1.20141 0.89694 0.75343 0.81728 1.90662 1.38026 1.52129 1.65828 1.48052 1.10998 1.68930 1.05337 1.22139 0.86155 0.99486 0.93639 1.21984 0.98282 0.98401 0.97908 1.21447 0.93885 1.01821 0.97218 1.21454 0.95552 0.98295 0.95829 0.93245 1.20708 0.94183 0.91016 0.90887 1.42528 1.34414 1.17694 1.43806 1.19667 1.05075 1.00610 1.12441 0.90840 1.25575 1.02513 0.96333 1.02307 1.69819 1.42894 1.07219 1.42028 0.85057 0.78800 0.77489 0.78316 1.19169 1.21658 1.22061 1.21295 0.86785 0.97273 0.93825 0.90584 0.91536 0.89859 0.85835 0.84993 0.84587 0.84457 0.85293 0.89884 0.84727 0.89496 0.86882 0.92463 0.88242 0.93575 0.91174 0.97237 0.95391 0.79282 0.93928 0.91733 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.84 71.98 0.71 -0.24 16 2 C -0.05 -0.75 2.19 -52.93 -0.12 -0.87 16 3 C -0.06 -1.21 4.27 -19.86 -0.08 -1.29 16 4 C -0.12 -2.38 8.82 22.27 0.20 -2.18 16 5 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 6 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 7 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 8 C -0.12 -2.38 9.34 22.27 0.21 -2.17 16 9 C -0.14 -2.26 9.02 30.59 0.28 -1.98 16 10 C -0.19 -3.28 4.74 -11.54 -0.05 -3.34 16 11 H 0.15 1.83 6.73 -2.39 -0.02 1.81 16 12 C 0.54 14.51 5.81 87.66 0.51 15.02 16 13 O -0.59 -21.31 15.63 -3.02 -0.05 -21.36 16 14 N -0.60 -14.70 2.97 -818.13 -2.43 -17.13 16 15 C 0.11 1.78 6.38 86.51 0.55 2.33 16 16 C -0.13 -2.62 6.10 30.82 0.19 -2.43 16 17 C -0.11 -3.10 5.05 30.62 0.15 -2.95 16 18 C -0.09 -3.11 2.37 -10.73 -0.03 -3.14 16 19 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 20 C 0.16 6.70 5.65 86.38 0.49 7.19 16 21 N -0.74 -39.04 5.32 -343.46 -1.83 -40.87 16 22 C -0.25 -14.18 9.99 84.04 0.84 -13.34 16 23 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 24 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 25 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 26 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 30 C 0.13 3.92 5.71 86.35 0.49 4.41 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.62 8.08 -2.38 -0.02 0.60 16 33 H 0.08 0.46 7.90 -2.39 -0.02 0.44 16 34 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.13 2.19 7.94 -2.91 -0.02 2.17 16 39 H 0.08 1.85 7.55 -2.39 -0.02 1.83 16 40 H 0.13 1.38 8.05 -2.39 -0.02 1.36 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.23 5.58 -2.39 -0.01 1.21 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.66 7.16 -2.39 -0.02 1.64 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.37 20.82 6.86 -92.71 -0.64 20.18 16 50 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 51 H 0.06 2.26 7.00 -2.39 -0.02 2.25 16 52 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -75.75 413.27 3.74 -72.01 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.26 Total: 34.05 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 5.47 Total: -15.87 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -3.97 Total: -117.89 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.05 Total: -21.36 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -75.75 3.74 -72.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714075049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.829 kcal (2) G-P(sol) polarization free energy of solvation -75.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds