Wall clock time and date at job start Wed Apr 1 2020 02:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 115.56298 * 2 1 4 4 C 1.38236 * 119.99809 * 79.29650 * 3 2 1 5 5 C 1.38235 * 120.00145 * 179.76889 * 4 3 2 6 6 C 1.38243 * 119.99605 * 0.51052 * 5 4 3 7 7 C 1.38238 * 119.99926 * 359.74783 * 6 5 4 8 8 C 1.38226 * 119.99970 * 359.97438 * 7 6 5 9 9 C 1.53075 * 117.49549 * 214.29697 * 2 1 3 10 10 C 1.52995 * 117.50131 * 145.69446 * 2 1 3 11 11 H 1.08997 * 117.50217 * 359.97417 * 10 2 1 12 12 C 1.50705 * 117.49881 * 214.97703 * 10 2 1 13 13 O 1.21281 * 119.99838 * 293.13065 * 12 10 2 14 14 N 1.34779 * 119.99551 * 113.12681 * 12 10 2 15 15 C 1.46919 * 120.63559 * 359.97438 * 14 12 10 16 16 C 1.53197 * 108.77502 * 233.62928 * 15 14 12 17 17 C 1.53033 * 109.31165 * 305.36143 * 16 15 14 18 18 C 1.53045 * 109.53802 * 61.36796 * 17 16 15 19 19 H 1.09003 * 109.49816 * 58.58450 * 18 17 16 20 20 C 1.53005 * 109.49929 * 178.68168 * 18 17 16 21 21 N 1.46504 * 109.46716 * 294.99842 * 20 18 17 22 22 C 1.36935 * 119.99666 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00127 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99909 * 179.97438 * 22 21 20 25 25 N 1.31609 * 120.00174 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99870 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47169 * 0.02562 * 26 24 22 28 28 H 1.48493 * 109.46935 * 120.00287 * 26 24 22 29 29 H 1.48503 * 109.47197 * 240.00377 * 26 24 22 30 30 C 1.46930 * 120.62711 * 180.02562 * 14 12 10 31 31 H 1.08997 * 109.46681 * 274.30645 * 1 2 3 32 32 H 1.09000 * 109.47332 * 34.30968 * 1 2 3 33 33 H 1.09008 * 109.47091 * 154.31232 * 1 2 3 34 34 H 1.08005 * 119.99909 * 0.02562 * 4 3 2 35 35 H 1.07992 * 120.00524 * 180.23364 * 5 4 3 36 36 H 1.07997 * 119.99609 * 179.72721 * 6 5 4 37 37 H 1.07997 * 119.99441 * 179.97438 * 7 6 5 38 38 H 1.08004 * 119.99882 * 179.97438 * 8 7 6 39 39 H 1.09000 * 117.51791 * 145.03323 * 9 2 1 40 40 H 1.09007 * 117.49147 * 359.97438 * 9 2 1 41 41 H 1.08997 * 109.58827 * 113.84441 * 15 14 12 42 42 H 1.09003 * 109.58750 * 353.41777 * 15 14 12 43 43 H 1.09000 * 109.49462 * 185.41080 * 16 15 14 44 44 H 1.08999 * 109.49870 * 65.31806 * 16 15 14 45 45 H 1.09005 * 109.46150 * 181.38150 * 17 16 15 46 46 H 1.08997 * 109.46316 * 301.35750 * 17 16 15 47 47 H 1.08989 * 109.46802 * 54.99648 * 20 18 17 48 48 H 1.08994 * 109.46919 * 175.00001 * 20 18 17 49 49 H 0.96996 * 120.00418 * 0.02562 * 21 20 18 50 50 H 0.97007 * 120.00366 * 179.97438 * 25 24 22 51 51 H 1.09009 * 109.58335 * 6.58496 * 30 14 12 52 52 H 1.08999 * 109.70171 * 246.22998 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1803 1.3595 0.0000 4 6 2.2779 2.0789 1.1764 5 6 2.8787 3.3239 1.1773 6 6 3.3723 3.8540 -0.0001 7 6 3.2699 3.1368 -1.1775 8 6 2.6743 1.8894 -1.1773 9 6 2.2367 -1.1218 -0.7651 10 6 2.2365 -1.1210 0.7649 11 1 1.6114 -1.8583 1.2684 12 6 3.5294 -0.7811 1.4607 13 8 4.5102 -0.4900 0.8094 14 7 3.5955 -0.8007 2.8067 15 6 2.4157 -1.1508 3.6092 16 6 2.1657 -0.0365 4.6303 17 6 3.4374 0.1938 5.4498 18 6 4.5716 0.6348 4.5217 19 1 4.2813 1.5471 4.0005 20 6 5.8337 0.8964 5.3460 21 7 5.6042 2.0314 6.2435 22 6 6.6000 2.4518 7.0841 23 1 7.5547 1.9469 7.0853 24 6 6.3827 3.5276 7.9341 25 7 5.2195 4.1432 7.9323 26 14 7.7415 4.1015 9.0804 27 1 8.9427 3.2494 8.8899 28 1 8.0834 5.5138 8.7746 29 1 7.2786 3.9978 10.4876 30 6 4.8487 -0.4712 3.4994 31 1 -0.3632 0.0772 1.0248 32 1 -0.3634 0.8488 -0.5793 33 1 -0.3634 -0.9262 -0.4455 34 1 1.8885 1.6665 2.0955 35 1 2.9584 3.8843 2.0970 36 1 3.8377 4.8285 -0.0002 37 1 3.6552 3.5512 -2.0973 38 1 2.5939 1.3293 -2.0972 39 1 3.1719 -0.8765 -1.2684 40 1 1.6113 -1.8596 -1.2678 41 1 2.5945 -2.0910 4.1309 42 1 1.5474 -1.2512 2.9580 43 1 1.3524 -0.3279 5.2950 44 1 1.8980 0.8821 4.1082 45 1 3.2547 0.9693 6.1937 46 1 3.7185 -0.7320 5.9519 47 1 6.0734 0.0108 5.9343 48 1 6.6637 1.1240 4.6773 49 1 4.7466 2.4847 6.2427 50 1 5.0675 4.8948 8.5265 51 1 5.5857 -0.1232 2.7755 52 1 5.2287 -1.3551 4.0117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714075050.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:23 Heat of formation + Delta-G solvation = 19.218052 kcal Electronic energy + Delta-G solvation = -31014.456297 eV Core-core repulsion = 27172.324837 eV Total energy + Delta-G solvation = -3842.131460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.81424 -39.24504 -37.87778 -36.63219 -34.92638 -32.72513 -31.67238 -30.87836 -30.74980 -29.96357 -28.85308 -26.02717 -25.51611 -23.71230 -23.20784 -22.69428 -22.15208 -21.70130 -20.01475 -19.74427 -18.57086 -17.59881 -17.01757 -16.72074 -15.82958 -15.30379 -14.98795 -14.87872 -14.63072 -14.59956 -14.17633 -14.13768 -14.01218 -13.52132 -13.39858 -13.29713 -13.16105 -13.01807 -12.77796 -12.71746 -12.45648 -12.29657 -12.08574 -11.98426 -11.74006 -11.18950 -11.11827 -10.98050 -10.88644 -10.82736 -10.61032 -10.52430 -10.32184 -10.16162 -10.14211 -9.96192 -9.72799 -9.57611 -8.86349 -8.84984 -8.70504 -8.49739 -6.89287 -5.75119 -3.02957 1.36873 1.46715 2.47959 2.96907 3.44378 3.50369 3.52374 3.57600 3.80520 4.25226 4.41973 4.51311 4.60810 4.66691 4.78206 4.91105 4.97024 5.02926 5.05285 5.07676 5.17968 5.23632 5.34886 5.38739 5.40520 5.44680 5.48496 5.54756 5.59481 5.63247 5.65537 5.67732 5.79640 5.87784 5.90165 5.90630 6.04239 6.05136 6.07729 6.13252 6.20534 6.25469 6.48407 6.51351 6.59160 6.60964 6.61482 6.69177 6.82924 6.93271 7.04067 7.47659 7.72789 8.26875 8.44031 9.55441 10.13510 10.48550 11.47954 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.003069 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.308054 B = 9121.703124 C =10108.918542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.059 4.059 3 C -0.051 4.051 4 C -0.103 4.103 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.121 4.121 8 C -0.105 4.105 9 C -0.136 4.136 10 C -0.181 4.181 11 H 0.124 0.876 12 C 0.547 3.453 13 O -0.536 6.536 14 N -0.604 5.604 15 C 0.107 3.893 16 C -0.135 4.135 17 C -0.111 4.111 18 C -0.104 4.104 19 H 0.073 0.927 20 C 0.160 3.840 21 N -0.730 5.730 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.120 3.880 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.384 0.616 50 H 0.254 0.746 51 H 0.090 0.910 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.309 -11.058 -18.118 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.060 4.060 3 C -0.051 4.051 4 C -0.121 4.121 5 C -0.130 4.130 6 C -0.137 4.137 7 C -0.139 4.139 8 C -0.123 4.123 9 C -0.173 4.173 10 C -0.202 4.202 11 H 0.142 0.858 12 C 0.334 3.666 13 O -0.412 6.412 14 N -0.337 5.337 15 C -0.016 4.016 16 C -0.173 4.173 17 C -0.149 4.149 18 C -0.124 4.124 19 H 0.091 0.909 20 C 0.032 3.968 21 N -0.374 5.374 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.002 4.002 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.038 0.962 48 H 0.037 0.963 49 H 0.218 0.782 50 H 0.064 0.936 51 H 0.108 0.892 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.607 -10.906 -18.378 24.812 hybrid contribution 0.480 0.495 0.965 1.186 sum -12.127 -10.411 -17.414 23.637 Atomic orbital electron populations 1.21371 0.90518 1.02473 1.02527 1.20183 0.94467 0.87964 1.03350 1.18865 0.98909 0.93536 0.93765 1.20932 0.99198 0.94699 0.97256 1.21194 0.97711 0.95772 0.98363 1.21172 0.99638 1.00028 0.92843 1.21074 0.99726 0.94998 0.98140 1.20858 0.98403 0.95627 0.97400 1.23226 1.02941 0.99581 0.91600 1.22481 0.98162 1.03627 0.95945 0.85816 1.19456 0.88649 0.76724 0.81722 1.90686 1.37458 1.48309 1.64776 1.47968 1.12324 1.68328 1.05074 1.21795 0.87771 0.98146 0.93888 1.21954 0.98956 0.98608 0.97752 1.21526 0.93353 1.02150 0.97825 1.21633 0.97051 0.97908 0.95779 0.90874 1.20583 0.93333 0.91335 0.91582 1.42339 1.15740 1.34819 1.44523 1.19285 0.93843 1.10558 1.13066 0.91181 1.24717 0.97092 0.98801 1.00429 1.69663 1.22337 1.24544 1.41757 0.86130 0.81203 0.78326 0.80642 1.20568 1.21906 1.21915 1.21598 0.85604 0.97900 0.95095 0.91707 0.91438 0.91814 0.86505 0.85773 0.86180 0.86288 0.86390 0.87266 0.87738 0.91456 0.90074 0.90907 0.91651 0.90300 0.92119 0.96239 0.96265 0.78249 0.93639 0.89177 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.84 37.16 0.37 -0.43 16 2 C -0.06 -0.56 2.19 -155.62 -0.34 -0.91 16 3 C -0.05 -0.61 4.11 -104.62 -0.43 -1.04 16 4 C -0.10 -1.35 8.92 -39.58 -0.35 -1.71 16 5 C -0.11 -1.53 10.05 -39.58 -0.40 -1.93 16 6 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 7 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 8 C -0.10 -1.24 9.31 -39.59 -0.37 -1.60 16 9 C -0.14 -1.26 8.99 -26.69 -0.24 -1.50 16 10 C -0.18 -1.83 4.73 -91.77 -0.43 -2.27 16 11 H 0.12 0.95 6.73 -51.93 -0.35 0.60 16 12 C 0.55 7.55 5.95 -10.98 -0.07 7.49 16 13 O -0.54 -9.46 15.44 5.56 0.09 -9.37 16 14 N -0.60 -7.79 2.97 -172.80 -0.51 -8.31 16 15 C 0.11 1.07 6.30 -3.71 -0.02 1.04 16 16 C -0.13 -1.52 6.08 -26.61 -0.16 -1.68 16 17 C -0.11 -1.64 5.05 -26.69 -0.13 -1.77 16 18 C -0.10 -1.71 2.37 -90.52 -0.21 -1.93 16 19 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 20 C 0.16 3.26 5.66 -4.04 -0.02 3.24 16 21 N -0.73 -18.51 5.32 -59.91 -0.32 -18.83 16 22 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 26 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 C 0.12 1.79 5.71 -3.74 -0.02 1.76 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.06 0.35 7.90 -51.92 -0.41 -0.06 16 34 H 0.12 1.49 7.15 -52.48 -0.38 1.11 16 35 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.12 1.17 7.91 -52.48 -0.42 0.76 16 39 H 0.11 1.22 7.51 -51.93 -0.39 0.83 16 40 H 0.10 0.69 8.05 -51.92 -0.42 0.27 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.64 5.64 -51.93 -0.29 0.35 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.78 7.24 -51.93 -0.38 0.40 16 45 H 0.08 1.38 7.15 -51.93 -0.37 1.01 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.02 0.40 8.14 -51.94 -0.42 -0.02 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.38 10.14 6.85 -40.82 -0.28 9.86 16 50 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.09 1.51 7.01 -51.92 -0.36 1.15 16 52 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 411.17 15.07 6.20 6.20 Total: -1.00 -33.31 411.17 -11.39 -44.71 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -8.66 Total: 9.82 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.89 Total: -14.29 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.11 Total: -54.65 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.31 -11.39 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714075050.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.924 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds