Wall clock time and date at job start Wed Apr 1 2020 02:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 120.00404 * 2 1 4 4 C 1.38209 * 120.00482 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99622 * 359.75591 * 4 3 2 6 6 C 1.38213 * 119.99897 * 0.52195 * 5 4 3 7 7 C 1.50697 * 119.99740 * 179.74806 * 6 5 4 8 8 H 1.09009 * 115.54824 * 154.05824 * 7 6 5 9 9 C 1.52998 * 117.52150 * 8.35926 * 7 6 5 10 10 C 1.52997 * 117.50212 * 299.72341 * 7 6 5 11 11 H 1.09005 * 117.49697 * 0.02562 * 10 7 6 12 12 C 1.50698 * 117.50526 * 215.00360 * 10 7 6 13 13 O 1.21284 * 119.99594 * 0.02562 * 12 10 7 14 14 N 1.34777 * 120.00165 * 179.97438 * 12 10 7 15 15 C 1.46497 * 119.99984 * 185.20093 * 14 12 10 16 16 C 1.52995 * 109.47152 * 294.93412 * 15 14 12 17 17 C 1.53008 * 109.46953 * 54.93219 * 15 14 12 18 18 N 1.46495 * 109.47412 * 60.00140 * 17 15 14 19 19 C 1.36935 * 120.00271 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99999 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99941 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00374 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99819 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47207 * 60.00095 * 23 21 19 25 25 H 1.48504 * 109.47027 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47213 * 299.99864 * 23 21 19 27 27 C 1.52991 * 109.47245 * 174.93032 * 15 14 12 28 28 C 1.53006 * 117.51963 * 345.38853 * 27 15 14 29 29 C 1.53001 * 59.99908 * 107.48394 * 28 27 15 30 30 C 1.38220 * 119.99603 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.46898 * 269.97182 * 1 2 3 32 32 H 1.08999 * 109.46927 * 29.97545 * 1 2 3 33 33 H 1.08997 * 109.47462 * 149.97744 * 1 2 3 34 34 H 1.08004 * 119.99677 * 359.97438 * 3 2 1 35 35 H 1.07994 * 120.00251 * 179.97438 * 4 3 2 36 36 H 1.08004 * 120.00015 * 180.27477 * 5 4 3 37 37 H 1.08994 * 117.50550 * 145.03145 * 9 7 6 38 38 H 1.09002 * 117.49411 * 0.02562 * 9 7 6 39 39 H 0.96992 * 119.99821 * 5.20084 * 14 12 10 40 40 H 1.08998 * 109.47209 * 299.99698 * 16 15 14 41 41 H 1.09003 * 109.47787 * 60.00068 * 16 15 14 42 42 H 1.09006 * 109.47456 * 180.02562 * 16 15 14 43 43 H 1.09006 * 109.46702 * 180.02562 * 17 15 14 44 44 H 1.09003 * 109.47088 * 299.99382 * 17 15 14 45 45 H 0.97000 * 119.99840 * 359.97438 * 18 17 15 46 46 H 0.97000 * 120.00267 * 179.97438 * 22 21 19 47 47 H 1.09000 * 115.55486 * 199.68694 * 27 15 14 48 48 H 1.08993 * 117.49847 * 214.97187 * 28 27 15 49 49 H 1.08998 * 117.49500 * 359.97438 * 28 27 15 50 50 H 1.09007 * 117.49560 * 252.51602 * 29 28 27 51 51 H 1.08991 * 117.50152 * 107.49748 * 29 28 27 52 52 H 1.07998 * 120.00210 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0062 6 6 3.5806 -1.1970 0.0004 7 6 4.3341 -2.5021 0.0008 8 1 3.8013 -3.3524 0.4267 9 6 5.8493 -2.4436 0.2049 10 6 5.2753 -2.7749 -1.1742 11 1 5.3499 -2.0101 -1.9473 12 6 5.3950 -4.1984 -1.6541 13 8 4.7578 -5.0766 -1.1122 14 7 6.2095 -4.4954 -2.6860 15 6 6.2404 -5.8567 -3.2264 16 6 6.7862 -6.8143 -2.1653 17 6 4.8238 -6.2826 -3.6174 18 7 4.3011 -5.3657 -4.6334 19 6 3.0416 -5.5494 -5.1385 20 1 2.4338 -6.3704 -4.7882 21 6 2.5463 -4.6803 -6.1008 22 7 3.2872 -3.6800 -6.5282 23 14 0.8284 -4.9313 -6.7904 24 1 -0.1640 -4.8501 -5.6887 25 1 0.5398 -3.8774 -7.7960 26 1 0.7440 -6.2664 -7.4352 27 6 7.1434 -5.8950 -4.4608 28 6 7.5364 -4.5573 -5.0911 29 6 8.5715 -5.3676 -4.3082 30 6 2.1980 -1.1971 -0.0005 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6584 2.1326 -0.0004 35 1 4.1205 2.1325 0.0001 36 1 5.3517 -0.0002 0.0111 37 1 6.3134 -3.2553 0.7650 38 1 6.3013 -1.4609 0.3394 39 1 6.7750 -3.8079 -3.0709 40 1 7.7954 -6.5110 -1.8868 41 1 6.1429 -6.7871 -1.2858 42 1 6.8097 -7.8272 -2.5675 43 1 4.8468 -7.2957 -4.0190 44 1 4.1804 -6.2554 -2.7379 45 1 4.8469 -4.6281 -4.9478 46 1 2.9412 -3.0729 -7.2010 47 1 6.9883 -6.7407 -5.1308 48 1 7.6396 -4.5230 -6.1756 49 1 7.1512 -3.6497 -4.6265 50 1 8.8675 -4.9929 -3.3283 51 1 9.3558 -5.8662 -4.8776 52 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714172890.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:39 Heat of formation + Delta-G solvation = 52.302093 kcal Electronic energy + Delta-G solvation = -30492.692824 eV Core-core repulsion = 26651.995996 eV Total energy + Delta-G solvation = -3840.696829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.39793 -39.54329 -37.98257 -36.18370 -34.40979 -33.25226 -32.52538 -31.41860 -30.71844 -29.84186 -26.91588 -25.69390 -24.57858 -23.52057 -23.03906 -22.16284 -22.03445 -21.92506 -20.33070 -19.49372 -18.76067 -17.57767 -17.02140 -16.72056 -15.49283 -15.46664 -15.12540 -14.66194 -14.54298 -14.41390 -14.34055 -13.86786 -13.77231 -13.42869 -13.31266 -13.13355 -12.69762 -12.42516 -12.32533 -12.29327 -12.16661 -12.11250 -11.89894 -11.68585 -11.45641 -11.27754 -11.17779 -10.92043 -10.84862 -10.75191 -10.69197 -10.56395 -10.35713 -10.10398 -9.87486 -9.85195 -9.56885 -9.27574 -8.72892 -8.70549 -8.48762 -8.46144 -6.75813 -5.66905 -2.92217 1.30936 1.41556 2.88567 3.46628 3.49822 3.53286 3.54924 3.67454 4.08293 4.12230 4.55873 4.67870 4.75702 4.83708 4.87910 4.88838 4.97268 5.10623 5.13812 5.16132 5.16224 5.31061 5.35255 5.43720 5.47150 5.56244 5.61037 5.66872 5.70798 5.71966 5.80777 5.81553 5.82957 5.97107 6.00965 6.04462 6.11386 6.18525 6.20832 6.24817 6.35103 6.39121 6.45604 6.47183 6.60592 6.61400 6.65878 6.68291 6.97163 7.03052 7.20084 7.79727 7.96406 8.53146 8.70083 9.64772 10.24581 10.61699 11.56243 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007552 B = 0.004141 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3706.607877 B = 6759.633971 C = 9240.949600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.044 4.044 7 C -0.082 4.082 8 H 0.126 0.874 9 C -0.150 4.150 10 C -0.171 4.171 11 H 0.123 0.877 12 C 0.554 3.446 13 O -0.534 6.534 14 N -0.712 5.712 15 C 0.200 3.800 16 C -0.153 4.153 17 C 0.141 3.859 18 N -0.724 5.724 19 C -0.229 4.229 20 H 0.066 0.934 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.137 4.137 28 C -0.168 4.168 29 C -0.189 4.189 30 C -0.106 4.106 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.395 0.605 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.049 0.951 45 H 0.385 0.615 46 H 0.252 0.748 47 H 0.115 0.885 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.091 0.909 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.061 6.860 13.978 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.044 4.044 7 C -0.100 4.100 8 H 0.144 0.856 9 C -0.187 4.187 10 C -0.192 4.192 11 H 0.141 0.859 12 C 0.340 3.660 13 O -0.411 6.411 14 N -0.365 5.365 15 C 0.114 3.886 16 C -0.212 4.212 17 C 0.013 3.987 18 N -0.369 5.369 19 C -0.360 4.360 20 H 0.084 0.916 21 C -0.210 4.210 22 N -0.585 5.585 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.156 4.156 28 C -0.205 4.205 29 C -0.226 4.226 30 C -0.124 4.124 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.232 0.768 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.219 0.781 46 H 0.062 0.938 47 H 0.133 0.867 48 H 0.117 0.883 49 H 0.112 0.888 50 H 0.108 0.892 51 H 0.110 0.890 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.429 6.148 14.304 17.251 hybrid contribution -0.560 0.563 -1.097 1.355 sum 6.868 6.711 13.207 16.329 Atomic orbital electron populations 1.20804 0.91224 1.03066 1.02123 1.19906 0.96114 0.93050 0.99272 1.20999 0.94307 0.97378 1.01850 1.21049 0.94273 0.97742 1.00294 1.21008 0.99842 0.91945 1.01665 1.19107 0.93331 0.92946 0.98986 1.21022 0.91534 0.96762 1.00702 0.85611 1.23104 0.95736 1.03268 0.96578 1.22369 1.06856 0.96696 0.93260 0.85868 1.19291 0.78515 0.88639 0.79514 1.90612 1.44925 1.48543 1.57008 1.46075 1.43640 1.12236 1.34536 1.20062 0.96148 0.81452 0.90889 1.22087 1.00604 0.98742 0.99717 1.21113 0.90816 0.93335 0.93474 1.42210 1.16015 1.32954 1.45691 1.19189 0.91598 1.09281 1.15977 0.91560 1.24643 0.98171 0.98058 1.00176 1.69639 1.36634 1.18104 1.34127 0.86324 0.84855 0.76903 0.78491 1.21456 1.21815 1.21433 1.22405 0.94777 0.99340 0.99045 1.22896 1.02187 0.95202 1.00198 1.23018 0.92658 1.05238 1.01671 1.20928 0.93442 0.97912 1.00114 0.91296 0.91603 0.91222 0.86348 0.86204 0.86039 0.87952 0.87740 0.76758 0.93012 0.90710 0.91975 0.96157 0.93305 0.78121 0.93779 0.86697 0.88336 0.88801 0.89189 0.89035 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.08 -1.05 5.88 -104.62 -0.62 -1.66 16 3 C -0.13 -1.46 9.70 -39.59 -0.38 -1.85 16 4 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 5 C -0.13 -1.50 9.30 -39.58 -0.37 -1.87 16 6 C -0.04 -0.59 5.61 -104.62 -0.59 -1.18 16 7 C -0.08 -1.13 5.55 -91.78 -0.51 -1.64 16 8 H 0.13 1.89 7.67 -51.92 -0.40 1.50 16 9 C -0.15 -1.66 9.56 -26.73 -0.26 -1.92 16 10 C -0.17 -2.45 5.83 -91.77 -0.53 -2.99 16 11 H 0.12 1.75 8.14 -51.93 -0.42 1.33 16 12 C 0.55 9.59 7.02 -10.99 -0.08 9.52 16 13 O -0.53 -10.79 12.50 5.55 0.07 -10.72 16 14 N -0.71 -11.41 4.49 -47.61 -0.21 -11.62 16 15 C 0.20 3.37 0.52 -131.82 -0.07 3.31 16 16 C -0.15 -2.27 8.37 37.15 0.31 -1.96 16 17 C 0.14 3.07 4.89 -4.04 -0.02 3.05 16 18 N -0.72 -18.70 5.22 -59.91 -0.31 -19.01 16 19 C -0.23 -6.65 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 22 N -0.94 -28.47 13.06 55.49 0.72 -27.75 16 23 Si 0.90 23.19 29.55 -169.99 -5.02 18.16 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 27 C -0.14 -2.11 4.48 -90.62 -0.41 -2.52 16 28 C -0.17 -2.46 8.98 -26.73 -0.24 -2.70 16 29 C -0.19 -2.29 9.53 -26.73 -0.25 -2.54 16 30 C -0.11 -1.48 9.39 -39.58 -0.37 -1.85 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.19 6.02 -52.48 -0.32 0.87 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.10 0.93 6.17 -51.93 -0.32 0.61 16 39 H 0.40 5.60 5.64 -40.82 -0.23 5.37 16 40 H 0.05 0.67 7.71 -51.93 -0.40 0.27 16 41 H 0.07 1.24 6.37 -51.93 -0.33 0.91 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 1.19 5.99 -51.93 -0.31 0.88 16 45 H 0.38 10.09 6.43 -40.82 -0.26 9.83 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 48 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.09 1.39 5.96 -51.93 -0.31 1.08 16 50 H 0.09 1.00 7.99 -51.92 -0.42 0.59 16 51 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 52 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 413.90 15.07 6.24 6.24 Total: -1.00 -33.38 413.90 -11.51 -44.89 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -8.33 Total: 18.47 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -4.66 Total: -18.65 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.20 Total: -58.38 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.38 -11.51 -44.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714172890.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.192 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds