Wall clock time and date at job start Wed Apr 1 2020 02:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00250 * 2 1 4 4 C 1.38211 * 120.00317 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.38218 * 119.99482 * 359.81307 * 5 4 3 7 7 C 1.50701 * 119.99803 * 180.23239 * 6 5 4 8 8 H 1.08997 * 115.55321 * 154.49047 * 7 6 5 9 9 C 1.53004 * 117.49812 * 8.81580 * 7 6 5 10 10 C 1.52992 * 60.00354 * 252.51226 * 9 7 6 11 11 H 1.08999 * 117.49840 * 107.49053 * 10 9 7 12 12 C 1.50696 * 117.50239 * 252.51232 * 10 9 7 13 13 O 1.21286 * 120.00143 * 68.61981 * 12 10 9 14 14 N 1.34769 * 120.00280 * 248.62521 * 12 10 9 15 15 C 1.46504 * 120.00340 * 175.85965 * 14 12 10 16 16 C 1.53000 * 109.47387 * 175.33668 * 15 14 12 17 17 C 1.52993 * 109.47283 * 55.33198 * 15 14 12 18 18 N 1.46500 * 109.47162 * 60.00286 * 17 15 14 19 19 C 1.36940 * 120.00146 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99716 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00043 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99896 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00036 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47116 * 59.99702 * 23 21 19 25 25 H 1.48505 * 109.47289 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47285 * 299.99875 * 23 21 19 27 27 C 1.53003 * 109.46675 * 295.33016 * 15 14 12 28 28 C 1.52995 * 117.50108 * 1.78340 * 27 15 14 29 29 C 1.52996 * 117.50235 * 293.15828 * 27 15 14 30 30 C 1.38210 * 119.99997 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47327 * 269.98121 * 1 2 3 32 32 H 1.09002 * 109.47056 * 29.98007 * 1 2 3 33 33 H 1.09004 * 109.47344 * 149.97918 * 1 2 3 34 34 H 1.08001 * 119.99619 * 359.97374 * 3 2 1 35 35 H 1.08001 * 120.00090 * 179.97438 * 4 3 2 36 36 H 1.07991 * 120.00496 * 179.97438 * 5 4 3 37 37 H 1.09001 * 117.49749 * 0.02562 * 9 7 6 38 38 H 1.09005 * 117.49721 * 145.01885 * 9 7 6 39 39 H 0.97005 * 119.99784 * 355.85345 * 14 12 10 40 40 H 1.09007 * 109.47422 * 59.99427 * 16 15 14 41 41 H 1.08992 * 109.47604 * 179.97438 * 16 15 14 42 42 H 1.09003 * 109.46859 * 299.99917 * 16 15 14 43 43 H 1.09002 * 109.47184 * 180.02562 * 17 15 14 44 44 H 1.08995 * 109.47315 * 300.00199 * 17 15 14 45 45 H 0.96998 * 120.00087 * 0.02562 * 18 17 15 46 46 H 0.96993 * 119.99995 * 179.97438 * 22 21 19 47 47 H 1.09000 * 115.54448 * 147.49034 * 27 15 14 48 48 H 1.09004 * 117.49851 * 359.97438 * 28 27 15 49 49 H 1.09002 * 117.49817 * 145.01444 * 28 27 15 50 50 H 1.09001 * 117.49704 * 214.97840 * 29 27 15 51 51 H 1.08995 * 117.49980 * 359.97438 * 29 27 15 52 52 H 1.07997 * 120.00231 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0060 7 6 4.3341 -2.5020 0.0125 8 1 3.8001 -3.3511 0.4391 9 6 5.8485 -2.4424 0.2219 10 6 5.2798 -2.7776 -1.1583 11 1 5.3569 -2.0149 -1.9332 12 6 5.4016 -4.2024 -1.6338 13 8 4.7630 -5.0794 -1.0916 14 7 6.2202 -4.5021 -2.6616 15 6 6.4084 -5.8978 -3.0653 16 6 7.2856 -5.9527 -4.3177 17 6 5.0479 -6.5291 -3.3676 18 7 4.3970 -5.7905 -4.4524 19 6 3.1608 -6.1760 -4.8978 20 1 2.6655 -7.0244 -4.4490 21 6 2.5442 -5.4765 -5.9261 22 7 3.1476 -4.4423 -6.4727 23 14 0.8577 -6.0019 -6.5332 24 1 -0.1163 -5.9279 -5.4145 25 1 0.4228 -5.0994 -7.6294 26 1 0.9258 -7.3966 -7.0386 27 6 7.0883 -6.6691 -1.9323 28 6 7.3927 -5.9062 -0.6416 29 6 8.5308 -6.2933 -1.5880 30 6 2.1980 -1.1969 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 1.6583 2.1326 -0.0004 35 1 4.1204 2.1327 0.0001 36 1 5.3516 0.0000 0.0016 37 1 6.2998 -1.4592 0.3554 38 1 6.3109 -3.2524 0.7860 39 1 6.6849 -3.7937 -3.1341 40 1 8.2549 -5.5028 -4.1024 41 1 7.4260 -6.9910 -4.6178 42 1 6.8013 -5.4030 -5.1249 43 1 5.1879 -7.5676 -3.6675 44 1 4.4230 -6.4901 -2.4754 45 1 4.8420 -5.0288 -4.8558 46 1 2.7170 -3.9537 -7.1915 47 1 6.8065 -7.7183 -1.8427 48 1 7.1090 -4.8546 -0.5997 49 1 7.3110 -6.4533 0.2976 50 1 9.1979 -7.0950 -1.2714 51 1 8.9957 -5.4967 -2.1689 52 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714172891.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:43 Heat of formation + Delta-G solvation = 56.263423 kcal Electronic energy + Delta-G solvation = -30505.676059 eV Core-core repulsion = 26665.151007 eV Total energy + Delta-G solvation = -3840.525052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.54590 -39.57628 -37.72933 -35.99225 -34.87377 -33.25660 -32.54890 -31.39303 -30.74615 -29.48552 -26.94851 -26.01894 -24.54467 -23.65095 -23.44637 -22.11614 -22.10162 -21.30400 -20.27652 -19.45827 -18.96545 -17.37553 -17.21620 -16.63073 -15.85404 -15.41534 -15.29892 -15.03201 -14.44925 -14.33599 -14.09277 -13.84130 -13.79194 -13.52388 -13.21791 -13.15864 -12.82365 -12.51767 -12.33082 -12.22766 -12.06817 -12.04895 -11.97019 -11.78267 -11.36038 -11.24909 -11.05819 -10.93155 -10.81396 -10.75808 -10.69859 -10.58882 -10.36775 -10.19396 -10.02618 -9.80679 -9.59758 -9.21569 -8.74871 -8.67953 -8.50216 -8.48373 -6.75413 -5.67498 -2.92773 1.27564 1.38090 2.91284 3.44171 3.50126 3.53586 3.55309 3.66232 4.01915 4.11275 4.53608 4.66257 4.74167 4.84179 4.85284 4.88954 4.93673 5.07412 5.09774 5.14459 5.18006 5.31278 5.36447 5.41545 5.48291 5.53234 5.56274 5.61983 5.68231 5.70092 5.75793 5.78556 5.79103 5.93899 6.00809 6.01609 6.08478 6.08792 6.15911 6.19417 6.29754 6.35593 6.41665 6.43820 6.57538 6.65015 6.66920 6.69279 6.99468 7.01240 7.26796 7.79978 8.00158 8.52598 8.75312 9.63629 10.22884 10.58463 11.55973 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007099 B = 0.004234 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3943.220684 B = 6611.862598 C = 9732.861105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.044 4.044 7 C -0.082 4.082 8 H 0.126 0.874 9 C -0.150 4.150 10 C -0.172 4.172 11 H 0.122 0.878 12 C 0.553 3.447 13 O -0.523 6.523 14 N -0.712 5.712 15 C 0.201 3.799 16 C -0.148 4.148 17 C 0.139 3.861 18 N -0.725 5.725 19 C -0.227 4.227 20 H 0.067 0.933 21 C -0.016 4.016 22 N -0.938 5.938 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.143 4.143 28 C -0.165 4.165 29 C -0.183 4.183 30 C -0.106 4.106 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.395 0.605 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.018 0.982 44 H 0.057 0.943 45 H 0.381 0.619 46 H 0.253 0.747 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.090 0.910 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.318 8.994 14.949 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.044 4.044 7 C -0.101 4.101 8 H 0.144 0.856 9 C -0.187 4.187 10 C -0.193 4.193 11 H 0.140 0.860 12 C 0.340 3.660 13 O -0.399 6.399 14 N -0.362 5.362 15 C 0.115 3.885 16 C -0.205 4.205 17 C 0.011 3.989 18 N -0.369 5.369 19 C -0.358 4.358 20 H 0.085 0.915 21 C -0.212 4.212 22 N -0.588 5.588 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.162 4.162 28 C -0.202 4.202 29 C -0.220 4.220 30 C -0.124 4.124 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.229 0.771 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.215 0.785 46 H 0.063 0.937 47 H 0.125 0.875 48 H 0.112 0.888 49 H 0.104 0.896 50 H 0.106 0.894 51 H 0.109 0.891 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.699 8.246 15.311 19.018 hybrid contribution -0.611 0.367 -0.967 1.201 sum 7.088 8.613 14.344 18.170 Atomic orbital electron populations 1.20806 0.91210 1.03051 1.02170 1.19907 0.96123 0.93046 0.99267 1.21002 0.94303 0.97383 1.01861 1.21052 0.94274 0.97749 1.00306 1.21009 0.99849 0.91944 1.01686 1.19120 0.93326 0.92960 0.98965 1.21033 0.91505 0.96745 1.00811 0.85574 1.23125 0.95795 1.03272 0.96503 1.22392 1.06810 0.96838 0.93283 0.86012 1.19165 0.78455 0.88572 0.79848 1.90656 1.43772 1.48544 1.56923 1.45887 1.47637 1.08460 1.34234 1.20047 0.96248 0.80328 0.91914 1.21986 0.98182 1.03366 0.96988 1.21169 0.90774 0.93624 0.93311 1.42224 1.19222 1.35880 1.39608 1.19185 0.93879 1.10095 1.12685 0.91505 1.24652 0.98640 0.98295 0.99566 1.69633 1.38597 1.21810 1.28718 0.86301 0.84592 0.77480 0.78070 1.21439 1.21812 1.21407 1.22561 0.96834 0.99952 0.96876 1.22948 1.02190 1.01191 0.93898 1.22952 0.91413 1.03386 1.04273 1.20937 0.93457 0.97928 1.00123 0.91268 0.91606 0.91216 0.86341 0.86203 0.86036 0.87751 0.87904 0.77124 0.92942 0.91101 0.90756 0.96418 0.92545 0.78493 0.93739 0.87483 0.88800 0.89622 0.89416 0.89121 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.01 36.00 0.36 -0.79 16 2 C -0.08 -1.01 5.88 -104.63 -0.62 -1.63 16 3 C -0.13 -1.41 9.70 -39.58 -0.38 -1.79 16 4 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 5 C -0.13 -1.45 9.30 -39.58 -0.37 -1.81 16 6 C -0.04 -0.57 5.61 -104.62 -0.59 -1.16 16 7 C -0.08 -1.10 5.56 -91.77 -0.51 -1.61 16 8 H 0.13 1.88 7.67 -51.93 -0.40 1.48 16 9 C -0.15 -1.61 9.42 -26.73 -0.25 -1.86 16 10 C -0.17 -2.36 5.82 -91.77 -0.53 -2.90 16 11 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 12 C 0.55 9.28 4.64 -10.99 -0.05 9.23 16 13 O -0.52 -10.51 12.54 5.55 0.07 -10.44 16 14 N -0.71 -11.07 4.20 -47.61 -0.20 -11.27 16 15 C 0.20 3.31 0.55 -131.82 -0.07 3.24 16 16 C -0.15 -2.22 8.18 37.16 0.30 -1.92 16 17 C 0.14 3.02 4.83 -4.05 -0.02 3.00 16 18 N -0.72 -18.73 5.18 -59.91 -0.31 -19.04 16 19 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.94 -28.71 13.06 55.49 0.72 -27.99 16 23 Si 0.90 23.24 29.55 -169.99 -5.02 18.22 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 C -0.14 -2.07 4.86 -90.62 -0.44 -2.51 16 28 C -0.17 -2.21 8.53 -26.73 -0.23 -2.43 16 29 C -0.18 -2.15 9.68 -26.73 -0.26 -2.41 16 30 C -0.11 -1.44 9.39 -39.58 -0.37 -1.81 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.14 6.03 -52.49 -0.32 0.82 16 37 H 0.10 0.90 6.18 -51.93 -0.32 0.57 16 38 H 0.10 1.09 7.66 -51.93 -0.40 0.69 16 39 H 0.40 5.32 8.48 -40.82 -0.35 4.98 16 40 H 0.05 0.64 6.89 -51.93 -0.36 0.28 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.29 6.86 -51.93 -0.36 0.94 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 1.37 5.72 -51.93 -0.30 1.08 16 45 H 0.38 10.08 6.35 -40.82 -0.26 9.82 16 46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.11 1.59 8.06 -51.93 -0.42 1.17 16 48 H 0.09 1.28 4.54 -51.93 -0.24 1.05 16 49 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.09 1.00 7.17 -51.93 -0.37 0.63 16 52 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 410.29 15.07 6.18 6.18 Total: -1.00 -33.62 410.29 -11.50 -45.12 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -8.27 Total: 17.35 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -4.67 Total: -18.13 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.21 Total: -58.30 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.62 -11.50 -45.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714172891.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.385 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds