Wall clock time and date at job start Wed Apr 1 2020 02:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47511 * 120.00071 * 2 1 3 5 5 N 1.46904 * 109.46950 * 295.00239 * 4 2 1 6 6 C 1.46899 * 111.00029 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47254 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47242 * 295.00236 * 7 6 5 9 9 C 1.52997 * 109.47242 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47380 * 59.99720 * 9 8 7 11 11 C 1.53000 * 109.46929 * 60.00036 * 10 9 8 12 12 C 1.53002 * 109.46654 * 300.00174 * 10 9 8 13 13 C 1.52994 * 109.47404 * 174.99689 * 7 6 5 14 14 C 1.53005 * 109.47097 * 240.00227 * 2 1 3 15 15 N 1.46499 * 109.47265 * 64.99179 * 14 2 1 16 16 C 1.34777 * 119.99881 * 179.97438 * 15 14 2 17 17 O 1.21280 * 119.99876 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99771 * 180.02562 * 16 15 14 19 19 S 1.80992 * 109.46865 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99966 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99885 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00076 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00226 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99877 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47251 * 90.00506 * 24 22 20 26 26 H 1.48503 * 109.47105 * 210.00130 * 24 22 20 27 27 H 1.48499 * 109.47503 * 330.00093 * 24 22 20 28 28 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46945 * 299.99383 * 1 2 3 30 30 H 1.09000 * 109.47367 * 60.00122 * 1 2 3 31 31 H 1.08995 * 109.47319 * 175.00169 * 4 2 1 32 32 H 1.09003 * 109.47435 * 54.99493 * 4 2 1 33 33 H 1.00908 * 110.99583 * 303.94989 * 5 4 2 34 34 H 1.09002 * 109.47043 * 299.99792 * 6 5 4 35 35 H 1.09001 * 109.47354 * 59.99854 * 6 5 4 36 36 H 1.09008 * 109.47017 * 54.99767 * 7 6 5 37 37 H 1.09008 * 109.46731 * 299.99706 * 8 7 6 38 38 H 1.08998 * 109.47430 * 59.99652 * 8 7 6 39 39 H 1.08998 * 109.46934 * 299.99660 * 9 8 7 40 40 H 1.09000 * 109.47325 * 179.97438 * 9 8 7 41 41 H 1.08992 * 109.47003 * 180.02562 * 10 9 8 42 42 H 1.09000 * 109.47229 * 300.00166 * 11 10 9 43 43 H 1.09000 * 109.47218 * 59.99878 * 11 10 9 44 44 H 1.08998 * 109.46849 * 180.02562 * 11 10 9 45 45 H 1.08995 * 109.46734 * 299.99283 * 12 10 9 46 46 H 1.09002 * 109.46264 * 180.02562 * 12 10 9 47 47 H 1.09000 * 109.47476 * 300.00087 * 13 7 6 48 48 H 1.09008 * 109.46970 * 60.00049 * 13 7 6 49 49 H 1.08997 * 109.46733 * 184.99917 * 14 2 1 50 50 H 1.09001 * 109.46729 * 304.99704 * 14 2 1 51 51 H 0.97005 * 119.99732 * 0.02562 * 15 14 2 52 52 H 1.08996 * 109.47265 * 300.00406 * 18 16 15 53 53 H 1.09002 * 109.46623 * 60.00411 * 18 16 15 54 54 H 0.96995 * 120.00240 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6515 0.0374 2.4456 6 6 2.1259 -0.6265 3.6671 7 6 1.7036 0.1916 4.8891 8 6 2.4114 1.5478 4.8645 9 6 1.9886 2.3660 6.0861 10 6 2.3724 1.6135 7.3618 11 6 3.8870 1.3988 7.3911 12 6 1.6645 0.2573 7.3864 13 6 2.0878 -0.5612 6.1644 14 6 2.0400 -0.7212 -1.2493 15 7 1.6523 0.0353 -2.4424 16 6 1.9963 -0.4131 -3.6660 17 8 2.6264 -1.4432 -3.7792 18 6 1.5980 0.3654 -4.8933 19 16 2.2012 -0.4879 -6.3711 20 6 1.6128 0.6083 -7.6189 21 1 1.0606 1.4944 -7.3427 22 6 1.8582 0.3325 -8.9569 23 7 1.4192 1.1516 -9.8891 24 14 2.8128 -1.2005 -9.4347 25 1 1.8690 -2.3299 -9.6318 26 1 3.5539 -0.9488 -10.6967 27 1 3.7743 -1.5414 -8.3556 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 3.1264 -0.7994 1.2055 32 1 1.6055 -1.7198 1.2952 33 1 1.9883 0.9874 2.3966 34 1 1.6923 -1.6245 3.7300 35 1 3.2129 -0.7036 3.6400 36 1 0.6245 0.3446 4.8687 37 1 3.4905 1.3948 4.8849 38 1 2.1376 2.0841 3.9559 39 1 0.9096 2.5190 6.0652 40 1 2.4932 3.3320 6.0688 41 1 2.0708 2.1963 8.2321 42 1 4.1883 0.8159 6.5208 43 1 4.3913 2.3650 7.3735 44 1 4.1604 0.8624 8.2997 45 1 0.5855 0.4104 7.3656 46 1 1.9376 -0.2785 8.2954 47 1 1.5835 -1.5274 6.1820 48 1 3.1669 -0.7142 6.1849 49 1 3.1263 -0.7994 -1.2056 50 1 1.6054 -1.7198 -1.2952 51 1 1.1486 0.8594 -2.3517 52 1 0.5117 0.4436 -4.9372 53 1 2.0326 1.3639 -4.8470 54 1 1.5910 0.9591 -10.8241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714376038.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:54 Heat of formation + Delta-G solvation = -102.862276 kcal Electronic energy + Delta-G solvation = -26823.731641 eV Core-core repulsion = 23111.750332 eV Total energy + Delta-G solvation = -3711.981309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.74389 -40.29765 -38.34082 -36.25452 -34.67395 -34.17878 -32.30481 -31.60999 -30.78757 -28.34247 -27.89813 -27.35031 -26.07548 -24.42623 -23.29011 -21.86674 -21.72238 -21.14875 -19.84545 -19.48454 -17.88110 -17.41646 -17.06700 -16.92241 -16.77435 -16.52617 -15.92142 -15.68337 -15.53555 -15.36955 -15.08798 -14.91084 -14.63570 -14.55585 -14.42635 -14.01131 -13.86625 -13.45845 -13.35037 -13.30062 -13.10059 -13.01596 -12.98511 -12.86832 -12.67056 -12.46812 -12.23077 -12.02435 -11.92267 -11.85906 -11.78985 -11.72491 -11.67942 -11.17010 -11.04713 -11.00983 -10.81783 -10.78305 -10.53586 -10.13003 -9.32658 -8.99610 -8.51432 -6.22345 0.99268 1.31578 1.47038 1.56197 1.56944 2.22166 2.26716 2.71919 2.86939 3.19432 3.77928 3.78722 3.83260 3.88287 3.89387 4.02973 4.07520 4.22668 4.23619 4.35663 4.37021 4.47305 4.50023 4.51461 4.58312 4.58658 4.67441 4.69109 4.76409 4.78566 4.83307 4.87127 4.90791 4.97483 5.02436 5.10906 5.13335 5.17378 5.20466 5.26331 5.28261 5.31843 5.42378 5.44259 5.51226 5.51921 5.55470 5.68394 5.70851 6.08472 6.11510 6.45965 6.50298 6.93868 7.19664 8.60976 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.035267 B = 0.001372 C = 0.001361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.747868 B =20402.596328 C =20575.531919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.088 0.912 4 C 0.070 3.930 5 N -0.687 5.687 6 C 0.065 3.935 7 C -0.076 4.076 8 C -0.115 4.115 9 C -0.113 4.113 10 C -0.093 4.093 11 C -0.150 4.150 12 C -0.112 4.112 13 C -0.114 4.114 14 C 0.126 3.874 15 N -0.709 5.709 16 C 0.534 3.466 17 O -0.565 6.565 18 C -0.112 4.112 19 S -0.177 6.177 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.047 3.953 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.238 1.238 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.344 0.656 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.058 0.942 51 H 0.416 0.584 52 H 0.113 0.887 53 H 0.114 0.886 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.590 1.078 39.211 39.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.106 0.894 4 C -0.060 4.060 5 N -0.319 5.319 6 C -0.064 4.064 7 C -0.095 4.095 8 C -0.152 4.152 9 C -0.150 4.150 10 C -0.111 4.111 11 C -0.207 4.207 12 C -0.150 4.150 13 C -0.151 4.151 14 C 0.002 3.998 15 N -0.363 5.363 16 C 0.319 3.681 17 O -0.444 6.444 18 C -0.263 4.263 19 S 0.050 5.950 20 C -0.677 4.677 21 H 0.081 0.919 22 C -0.158 4.158 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.161 1.161 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.253 0.747 52 H 0.132 0.868 53 H 0.132 0.868 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.982 -0.849 38.898 38.920 hybrid contribution 0.171 1.352 -0.729 1.545 sum 1.153 0.503 38.170 38.190 Atomic orbital electron populations 1.21720 0.93599 1.01832 1.02203 1.21226 0.97402 1.00095 0.91737 0.89364 1.21815 0.97587 0.97716 0.88907 1.60465 1.64236 1.06075 1.01098 1.21983 0.97132 0.98007 0.89247 1.21073 1.00500 0.94742 0.93216 1.21608 1.00051 0.95454 0.98093 1.21528 1.00962 0.98259 0.94256 1.21103 0.95755 0.96360 0.97901 1.21927 0.95373 1.01550 1.01850 1.21539 0.99986 0.95574 0.97872 1.21566 1.01375 0.98340 0.93865 1.21394 0.99586 0.95331 0.83487 1.45727 1.57835 1.28398 1.04339 1.19963 0.78586 0.84723 0.84806 1.90687 1.40989 1.25785 1.86905 1.23275 1.05966 1.03125 0.93886 1.84716 1.74769 1.36481 0.99076 1.22469 1.41006 1.10956 0.93307 0.91929 1.25546 0.95484 0.99491 0.95318 1.70012 1.45770 1.38325 1.01363 0.85874 0.80654 0.79800 0.80081 1.18701 1.18282 1.16144 0.93505 0.90864 0.92873 0.94967 0.91073 0.83615 0.91477 0.95400 0.91170 0.92068 0.91818 0.92192 0.92026 0.91403 0.92251 0.92922 0.92785 0.92173 0.91812 0.92028 0.91761 0.92334 0.92385 0.74671 0.86834 0.86758 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.95 71.98 0.64 -1.22 16 2 C -0.09 -1.14 2.57 -10.79 -0.03 -1.17 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.07 0.89 5.07 86.30 0.44 1.32 16 5 N -0.69 -7.70 5.95 -513.89 -3.06 -10.76 16 6 C 0.07 0.70 5.14 86.30 0.44 1.14 16 7 C -0.08 -0.71 2.40 -10.80 -0.03 -0.74 16 8 C -0.11 -0.99 4.70 30.59 0.14 -0.85 16 9 C -0.11 -0.97 5.45 30.60 0.17 -0.81 16 10 C -0.09 -0.77 3.20 -10.79 -0.03 -0.80 16 11 C -0.15 -1.23 8.50 71.98 0.61 -0.61 16 12 C -0.11 -0.93 5.45 30.61 0.17 -0.77 16 13 C -0.11 -0.98 4.93 30.61 0.15 -0.83 16 14 C 0.13 2.54 5.06 86.38 0.44 2.98 16 15 N -0.71 -16.39 5.28 -463.05 -2.45 -18.84 16 16 C 0.53 18.28 7.85 87.66 0.69 18.97 16 17 O -0.57 -24.29 15.86 -3.03 -0.05 -24.34 16 18 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 19 S -0.18 -8.98 18.55 -56.49 -1.05 -10.03 16 20 C -0.53 -30.93 10.04 67.95 0.68 -30.24 16 21 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 22 C 0.05 2.77 5.50 84.86 0.47 3.23 16 23 N -0.92 -55.88 13.97 21.65 0.30 -55.58 16 24 Si 0.91 45.13 27.74 68.60 1.90 47.03 16 25 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.97 7.75 -2.39 -0.02 0.95 16 30 H 0.05 0.72 7.18 -2.39 -0.02 0.70 16 31 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.34 3.37 6.98 -89.69 -0.63 2.74 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.06 0.56 6.43 -2.38 -0.02 0.55 16 38 H 0.06 0.55 6.68 -2.39 -0.02 0.53 16 39 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 42 H 0.06 0.51 4.81 -2.39 -0.01 0.50 16 43 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.06 0.57 6.43 -2.38 -0.02 0.55 16 49 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.42 7.02 7.66 -92.70 -0.71 6.31 16 52 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 53 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 54 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -70.74 424.23 0.49 -70.26 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -0.51 Total: 16.40 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 5.39 Total: -14.15 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -5.20 Total: -85.17 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.05 Total: -10.03 kcal Total: -70.74 0.49 -70.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714376038.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.604 kcal (2) G-P(sol) polarization free energy of solvation -70.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds