Wall clock time and date at job start Wed Apr 1 2020 02:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 119.99963 * 2 1 4 4 H 1.07994 * 120.00015 * 202.23857 * 3 2 1 5 5 C 1.38813 * 119.99967 * 22.24445 * 3 2 1 6 6 N 1.31622 * 120.00279 * 14.15541 * 5 3 2 7 7 Si 1.86802 * 119.99825 * 194.15514 * 5 3 2 8 8 H 1.48497 * 109.47119 * 90.00004 * 7 5 3 9 9 H 1.48499 * 109.47357 * 209.99864 * 7 5 3 10 10 H 1.48499 * 109.47397 * 329.99833 * 7 5 3 11 11 C 1.46494 * 120.00101 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47244 * 89.99972 * 11 2 1 13 13 H 1.09002 * 110.88560 * 302.57819 * 12 11 2 14 14 C 1.55157 * 111.00455 * 66.45545 * 12 11 2 15 15 C 1.54320 * 102.94512 * 153.61346 * 14 12 11 16 16 N 1.47025 * 107.27084 * 337.80891 * 15 14 12 17 17 C 1.34773 * 125.64470 * 178.90182 * 16 15 14 18 18 O 1.21286 * 119.99433 * 185.18683 * 17 16 15 19 19 C 1.50692 * 120.00451 * 5.18386 * 17 16 15 20 20 C 1.53003 * 115.56090 * 81.35021 * 19 17 16 21 21 C 1.53004 * 117.50214 * 227.04021 * 19 17 16 22 22 C 1.53003 * 117.49947 * 295.66581 * 19 17 16 23 23 H 1.08998 * 117.49823 * 359.97438 * 22 19 17 24 24 C 1.50701 * 117.51586 * 145.02835 * 22 19 17 25 25 C 1.38240 * 120.00365 * 59.61162 * 24 22 19 26 26 C 1.38230 * 120.00093 * 179.78718 * 25 24 22 27 27 C 1.38239 * 119.99936 * 0.45757 * 26 25 24 28 28 C 1.38239 * 119.99949 * 359.77390 * 27 26 25 29 29 C 1.38234 * 119.99913 * 0.02562 * 28 27 26 30 30 C 1.47420 * 108.70106 * 359.16951 * 16 15 14 31 31 H 1.09000 * 109.47088 * 273.81967 * 1 2 3 32 32 H 1.08998 * 109.46975 * 33.81837 * 1 2 3 33 33 H 1.08994 * 109.47112 * 153.81964 * 1 2 3 34 34 H 0.97000 * 119.99791 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.46947 * 330.00026 * 11 2 1 36 36 H 1.08998 * 109.47611 * 210.00112 * 11 2 1 37 37 H 1.08998 * 110.71829 * 35.24922 * 14 12 11 38 38 H 1.09007 * 110.87221 * 272.05422 * 14 12 11 39 39 H 1.08994 * 109.88149 * 218.39095 * 15 14 12 40 40 H 1.09000 * 109.87901 * 97.22588 * 15 14 12 41 41 H 1.08999 * 109.47403 * 268.26978 * 20 19 17 42 42 H 1.09005 * 109.46713 * 28.27331 * 20 19 17 43 43 H 1.09004 * 109.47178 * 148.26770 * 20 19 17 44 44 H 1.08997 * 117.49753 * 0.02562 * 21 19 17 45 45 H 1.09001 * 117.52147 * 214.96676 * 21 19 17 46 46 H 1.07997 * 119.99727 * 359.97438 * 25 24 22 47 47 H 1.07998 * 120.00324 * 180.24866 * 26 25 24 48 48 H 1.07999 * 119.99814 * 179.78722 * 27 26 25 49 49 H 1.07998 * 119.99618 * 179.97438 * 28 27 26 50 50 H 1.07998 * 119.99545 * 179.97438 * 29 28 27 51 51 H 1.08997 * 110.36757 * 142.74173 * 30 16 15 52 52 H 1.09004 * 110.36468 * 265.05791 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1694 1.2207 -0.3540 5 6 1.5331 2.3433 0.4551 6 7 0.4106 2.2661 1.1381 7 14 2.2965 4.0105 0.0982 8 1 1.7682 4.5316 -1.1881 9 1 1.9561 4.9552 1.1922 10 1 3.7720 3.8700 0.0068 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5156 -1.8048 -1.9908 14 6 3.4225 -0.7355 -2.1594 15 6 4.0758 -1.6273 -3.2360 16 7 3.9374 -3.0217 -2.7907 17 6 4.3627 -4.1077 -3.4660 18 8 4.1121 -5.2183 -3.0478 19 6 5.1494 -3.9423 -4.7405 20 6 6.6417 -3.6552 -4.5627 21 6 4.7316 -4.7901 -5.9438 22 6 4.4408 -3.2880 -5.9283 23 1 3.4054 -2.9775 -5.7878 24 6 5.2658 -2.4102 -6.8338 25 6 6.3605 -2.9347 -7.4953 26 6 7.1145 -2.1306 -8.3293 27 6 6.7796 -0.7996 -8.4944 28 6 5.6878 -0.2739 -7.8291 29 6 4.9313 -1.0791 -6.9984 30 6 3.2508 -3.0353 -1.4862 31 1 -0.3633 0.0685 1.0254 32 1 -0.3633 0.8538 -0.5720 33 1 -0.3633 -0.9222 -0.4534 34 1 -0.0204 3.0750 1.4557 35 1 1.6084 -2.0281 0.5147 36 1 3.1499 -1.1382 0.5143 37 1 4.1725 -0.3570 -1.4649 38 1 2.8754 0.0873 -2.6199 39 1 5.1310 -1.3735 -3.3373 40 1 3.5663 -1.4905 -4.1898 41 1 6.8043 -2.5776 -4.5409 42 1 6.9870 -4.0938 -3.6264 43 1 7.1969 -4.0897 -5.3940 44 1 3.8875 -5.4672 -5.8135 45 1 5.5196 -5.1433 -6.6090 46 1 6.6247 -3.9734 -7.3629 47 1 7.9674 -2.5413 -8.8493 48 1 7.3709 -0.1705 -9.1433 49 1 5.4265 0.7661 -7.9579 50 1 4.0786 -0.6682 -6.4783 51 1 2.5753 -3.8883 -1.4220 52 1 3.9782 -3.0645 -0.6749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714910588.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:41 Heat of formation + Delta-G solvation = 40.165352 kcal Electronic energy + Delta-G solvation = -30347.853947 eV Core-core repulsion = 26506.630830 eV Total energy + Delta-G solvation = -3841.223117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.80604 -39.42779 -37.90271 -36.72111 -35.33952 -32.22971 -31.31227 -30.97242 -30.38544 -29.13284 -28.80326 -26.17353 -25.66155 -24.16772 -23.74960 -22.75001 -21.74007 -21.23164 -20.57134 -19.63817 -18.66106 -17.19789 -16.94315 -16.82471 -15.93600 -15.80752 -15.25111 -14.97873 -14.88425 -14.48928 -14.22675 -13.74088 -13.63708 -13.48430 -13.41063 -13.17375 -13.05471 -12.85452 -12.81710 -12.52819 -12.47949 -12.10257 -12.02483 -11.80428 -11.46801 -11.32609 -11.22061 -11.06739 -10.84564 -10.80690 -10.68231 -10.41180 -10.32550 -10.29223 -10.13996 -9.84400 -9.78621 -9.73603 -9.15238 -8.77706 -8.56323 -8.49696 -6.75119 -5.73240 -3.18655 1.04447 1.16290 2.59868 2.94810 3.27927 3.36113 3.42459 3.44176 3.78464 4.15312 4.39891 4.46806 4.49692 4.57405 4.68478 4.75324 4.84406 4.94054 4.97127 5.03988 5.21388 5.24979 5.32766 5.37566 5.41409 5.47652 5.51248 5.55637 5.62123 5.62391 5.69446 5.78922 5.79888 5.81732 5.87634 5.93426 5.99298 6.16333 6.23404 6.27631 6.28770 6.34818 6.38043 6.53081 6.56919 6.70277 6.74834 6.76374 6.91818 7.37071 7.61112 7.71669 7.80467 8.19505 8.38932 9.23005 9.87159 10.36495 11.32102 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011563 B = 0.002981 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.850910 B = 9391.906538 C =11240.782558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.599 5.599 3 C -0.252 4.252 4 H 0.071 0.929 5 C 0.000 4.000 6 N -0.907 5.907 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.162 3.838 12 C -0.116 4.116 13 H 0.074 0.926 14 C -0.111 4.111 15 C 0.100 3.900 16 N -0.608 5.608 17 C 0.562 3.438 18 O -0.543 6.543 19 C -0.133 4.133 20 C -0.106 4.106 21 C -0.139 4.139 22 C -0.101 4.101 23 H 0.117 0.883 24 C -0.046 4.046 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.116 4.116 29 C -0.109 4.109 30 C 0.108 3.892 31 H 0.028 0.972 32 H 0.042 0.958 33 H -0.003 1.003 34 H 0.252 0.748 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.124 0.876 51 H 0.073 0.927 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.862 -9.718 -18.259 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.382 4.382 4 H 0.089 0.911 5 C -0.198 4.198 6 N -0.552 5.552 7 Si 0.731 3.269 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.034 3.966 12 C -0.138 4.138 13 H 0.092 0.908 14 C -0.148 4.148 15 C -0.023 4.023 16 N -0.340 5.340 17 C 0.350 3.650 18 O -0.421 6.421 19 C -0.137 4.137 20 C -0.163 4.163 21 C -0.176 4.176 22 C -0.120 4.120 23 H 0.135 0.865 24 C -0.046 4.046 25 C -0.136 4.136 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.134 4.134 29 C -0.127 4.127 30 C -0.014 4.014 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.015 0.985 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.142 0.858 51 H 0.091 0.909 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.637 -10.216 -17.964 23.717 hybrid contribution 0.291 1.146 -0.203 1.200 sum 11.928 -9.070 -18.166 23.549 Atomic orbital electron populations 1.20777 0.82714 0.95543 0.99193 1.43856 1.01748 1.00569 1.85986 1.19211 0.97837 0.85294 1.35828 0.91140 1.25009 0.97997 0.98427 0.98343 1.70082 1.19718 1.26990 1.38423 0.86313 0.78700 0.84428 0.77467 1.21574 1.21847 1.20489 1.20606 0.96360 0.88627 0.91010 1.23108 0.97336 0.91928 1.01455 0.90770 1.22574 0.98499 0.97319 0.96444 1.22224 1.00586 0.80747 0.98718 1.48525 1.57629 1.06386 1.21498 1.19114 0.78790 0.83251 0.83872 1.90694 1.57608 1.24578 1.69180 1.21490 0.96826 1.06736 0.88607 1.21267 0.90241 1.02256 1.02527 1.23269 1.03847 0.92756 0.97719 1.21295 0.99195 0.94098 0.97383 0.86549 1.19024 0.95363 0.93599 0.96658 1.21072 0.95293 0.99984 0.97254 1.21107 0.99745 0.94116 0.98755 1.21165 0.97538 0.95538 1.00060 1.21170 0.95436 0.99905 0.96863 1.21037 1.00135 0.92989 0.98566 1.22327 0.95629 0.99375 0.84094 0.95372 0.93923 0.98492 0.93807 0.94320 0.93203 0.90607 0.89486 0.91871 0.91896 0.91449 0.91798 0.91333 0.87699 0.87507 0.85957 0.86179 0.86236 0.85907 0.85799 0.90882 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 8.98 59.85 0.54 4.43 16 2 N -0.60 -14.26 2.87 -181.13 -0.52 -14.78 16 3 C -0.25 -6.51 8.98 -15.06 -0.14 -6.65 16 4 H 0.07 1.75 6.71 -52.49 -0.35 1.40 16 5 C 0.00 0.01 5.07 -17.43 -0.09 -0.08 16 6 N -0.91 -25.99 10.74 55.49 0.60 -25.39 16 7 Si 0.90 21.19 29.58 -169.99 -5.03 16.16 16 8 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 C 0.16 3.12 5.19 -4.05 -0.02 3.10 16 12 C -0.12 -1.89 3.27 -88.59 -0.29 -2.18 16 13 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 14 C -0.11 -1.69 5.14 -24.90 -0.13 -1.82 16 15 C 0.10 1.28 6.17 -3.06 -0.02 1.26 16 16 N -0.61 -8.64 3.33 -170.67 -0.57 -9.21 16 17 C 0.56 8.25 6.93 -10.99 -0.08 8.17 16 18 O -0.54 -9.84 17.24 5.55 0.10 -9.75 16 19 C -0.13 -1.48 1.85 -155.66 -0.29 -1.77 16 20 C -0.11 -1.02 8.52 37.16 0.32 -0.71 16 21 C -0.14 -1.34 9.15 -26.72 -0.24 -1.58 16 22 C -0.10 -0.99 4.62 -91.77 -0.42 -1.42 16 23 H 0.12 1.20 7.61 -51.93 -0.40 0.81 16 24 C -0.05 -0.43 4.95 -104.62 -0.52 -0.95 16 25 C -0.12 -0.98 7.88 -39.58 -0.31 -1.29 16 26 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 27 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 28 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 29 C -0.11 -1.01 9.74 -39.58 -0.39 -1.40 16 30 C 0.11 1.62 6.40 -2.65 -0.02 1.61 16 31 H 0.03 0.73 7.43 -51.93 -0.39 0.35 16 32 H 0.04 1.10 7.23 -51.93 -0.38 0.72 16 33 H 0.00 -0.07 8.04 -51.93 -0.42 -0.49 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.05 0.97 8.00 -51.93 -0.42 0.55 16 37 H 0.08 1.22 7.40 -51.93 -0.38 0.84 16 38 H 0.09 1.44 8.14 -51.92 -0.42 1.01 16 39 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 40 H 0.06 0.74 6.90 -51.93 -0.36 0.38 16 41 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 42 H 0.06 0.66 8.02 -51.93 -0.42 0.24 16 43 H 0.07 0.55 6.26 -51.93 -0.33 0.22 16 44 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.11 0.82 6.08 -51.93 -0.32 0.50 16 46 H 0.12 0.85 5.19 -52.49 -0.27 0.58 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 50 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 51 H 0.07 1.13 7.99 -51.93 -0.41 0.72 16 52 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 LS Contribution 408.03 15.07 6.15 6.15 Total: -1.00 -30.86 408.03 -11.15 -42.01 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.59 Total: 0.14 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -3.29 Total: -5.34 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.49 Total: -49.38 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.10 Total: -9.75 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.86 -11.15 -42.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714910588.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.174 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds