Wall clock time and date at job start Wed Apr 1 2020 02:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99795 * 2 1 4 4 H 1.07999 * 120.00565 * 202.01149 * 3 2 1 5 5 C 1.38817 * 119.99992 * 22.00687 * 3 2 1 6 6 N 1.31622 * 120.00095 * 14.44972 * 5 3 2 7 7 Si 1.86802 * 120.00219 * 194.43896 * 5 3 2 8 8 H 1.48504 * 109.46713 * 60.00580 * 7 5 3 9 9 H 1.48498 * 109.47097 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47176 * 300.00838 * 7 5 3 11 11 C 1.46493 * 120.00597 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47129 * 89.99619 * 11 2 1 13 13 H 1.09006 * 110.88822 * 51.12679 * 12 11 2 14 14 C 1.55160 * 111.04228 * 287.21939 * 12 11 2 15 15 C 1.54317 * 102.86392 * 206.21715 * 14 12 11 16 16 N 1.47019 * 107.27479 * 22.52162 * 15 14 12 17 17 C 1.34776 * 125.64377 * 180.96787 * 16 15 14 18 18 O 1.21289 * 120.00018 * 184.81120 * 17 16 15 19 19 C 1.50706 * 120.00292 * 4.81202 * 17 16 15 20 20 C 1.52997 * 115.55016 * 84.14981 * 19 17 16 21 21 C 1.53005 * 117.49752 * 229.85797 * 19 17 16 22 22 C 1.52999 * 117.49400 * 298.47833 * 19 17 16 23 23 H 1.08993 * 117.50587 * 0.02562 * 22 19 17 24 24 C 1.50699 * 117.49440 * 144.99814 * 22 19 17 25 25 C 1.38238 * 120.00229 * 59.63460 * 24 22 19 26 26 C 1.38237 * 120.00182 * 179.80669 * 25 24 22 27 27 C 1.38244 * 119.99735 * 0.42741 * 26 25 24 28 28 C 1.38229 * 120.00095 * 359.80585 * 27 26 25 29 29 C 1.38240 * 120.00182 * 0.02562 * 28 27 26 30 30 C 1.47425 * 108.70743 * 0.70664 * 16 15 14 31 31 H 1.08996 * 109.47240 * 270.95878 * 1 2 3 32 32 H 1.09001 * 109.47113 * 30.96000 * 1 2 3 33 33 H 1.09003 * 109.46646 * 150.95737 * 1 2 3 34 34 H 0.96994 * 120.00235 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.46797 * 330.00409 * 11 2 1 36 36 H 1.08993 * 109.47297 * 210.00350 * 11 2 1 37 37 H 1.09000 * 110.71242 * 324.77137 * 14 12 11 38 38 H 1.08991 * 110.71718 * 87.86675 * 14 12 11 39 39 H 1.09002 * 109.98031 * 263.04676 * 15 14 12 40 40 H 1.08995 * 109.77406 * 141.88326 * 15 14 12 41 41 H 1.09001 * 109.47086 * 272.44691 * 20 19 17 42 42 H 1.09001 * 109.47169 * 32.44178 * 20 19 17 43 43 H 1.08992 * 109.47213 * 152.44480 * 20 19 17 44 44 H 1.08993 * 117.49929 * 359.97438 * 21 19 17 45 45 H 1.08993 * 117.49404 * 214.97739 * 21 19 17 46 46 H 1.07999 * 119.99715 * 0.02562 * 25 24 22 47 47 H 1.07994 * 120.00248 * 180.21005 * 26 25 24 48 48 H 1.07993 * 119.99669 * 179.79045 * 27 26 25 49 49 H 1.07997 * 120.00478 * 179.97438 * 28 27 26 50 50 H 1.08001 * 120.00554 * 179.97438 * 29 28 27 51 51 H 1.09006 * 110.36461 * 94.93533 * 30 16 15 52 52 H 1.08997 * 110.36659 * 217.14692 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1706 1.2202 -0.3505 5 6 1.5314 2.3443 0.4505 6 7 0.4095 2.2682 1.1346 7 14 2.2917 4.0112 0.0861 8 1 2.3843 4.2024 -1.3837 9 1 1.4438 5.0806 0.6713 10 1 3.6511 4.0757 0.6802 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7096 -1.4432 13 1 2.9026 -0.9032 -2.0224 14 6 1.1454 -2.2119 -2.1115 15 6 1.6634 -3.1887 -3.1881 16 7 3.0041 -3.6258 -2.7723 17 6 3.8021 -4.4698 -3.4558 18 8 4.8558 -4.8308 -2.9756 19 6 3.3854 -4.9651 -4.8168 20 6 3.7166 -4.0366 -5.9868 21 6 3.4501 -6.4726 -5.0703 22 6 2.0947 -5.7819 -4.9065 23 1 1.5469 -5.9607 -3.9813 24 6 1.2471 -5.6103 -6.1406 25 6 1.7735 -5.8975 -7.3861 26 6 0.9947 -5.7439 -8.5179 27 6 -0.3077 -5.2946 -8.4048 28 6 -0.8326 -5.0028 -7.1598 29 6 -0.0549 -5.1597 -6.0277 30 6 3.3335 -2.9831 -1.4871 31 1 -0.3633 0.0172 1.0275 32 1 -0.3633 0.8813 -0.5287 33 1 -0.3633 -0.8985 -0.4989 34 1 -0.0227 3.0775 1.4490 35 1 1.6085 -2.0285 0.5129 36 1 3.1499 -1.1384 0.5133 37 1 0.5162 -2.7290 -1.3871 38 1 0.6039 -1.3843 -2.5695 39 1 1.7205 -2.6839 -4.1525 40 1 0.9976 -4.0489 -3.2564 41 1 2.9036 -3.3242 -6.1268 42 1 4.6394 -3.4973 -5.7727 43 1 3.8429 -4.6267 -6.8944 44 1 3.7946 -7.1060 -4.2529 45 1 3.7289 -6.8031 -6.0708 46 1 2.7922 -6.2453 -7.4747 47 1 1.4049 -5.9715 -9.4906 48 1 -0.9151 -5.1714 -9.2893 49 1 -1.8500 -4.6514 -7.0714 50 1 -0.4648 -4.9313 -5.0550 51 1 3.0852 -3.6450 -0.6573 52 1 4.3900 -2.7169 -1.4559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714910589.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:45 Heat of formation + Delta-G solvation = 40.746395 kcal Electronic energy + Delta-G solvation = -30210.075009 eV Core-core repulsion = 26368.877088 eV Total energy + Delta-G solvation = -3841.197921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.83897 -39.45627 -37.93108 -36.75351 -35.34931 -32.26885 -31.34734 -30.99596 -30.34108 -29.22465 -28.83700 -26.16692 -25.69097 -24.20893 -23.78411 -22.81401 -21.73338 -21.12818 -20.60511 -19.81022 -18.74024 -17.22208 -17.01059 -16.56997 -16.10204 -15.71606 -15.52337 -14.96558 -14.89352 -14.58462 -13.95165 -13.90401 -13.67989 -13.56833 -13.43585 -13.23466 -13.14657 -12.96197 -12.69816 -12.57814 -12.31473 -12.11055 -12.03345 -11.95252 -11.49271 -11.35090 -11.28425 -11.05679 -10.91708 -10.81197 -10.73261 -10.45476 -10.34545 -10.32145 -10.05482 -9.88418 -9.82121 -9.75993 -9.18375 -8.80495 -8.56268 -8.50801 -6.74930 -5.73730 -3.17709 1.01416 1.12878 2.58129 2.92237 3.24391 3.38859 3.44358 3.45372 3.75593 4.11743 4.37100 4.45328 4.49379 4.54721 4.65668 4.72376 4.81135 4.86632 4.90361 5.02001 5.16651 5.18251 5.29720 5.35265 5.38227 5.46842 5.49723 5.53867 5.56746 5.59831 5.66512 5.75402 5.76242 5.77617 5.87724 5.93438 5.96919 6.09169 6.20139 6.23140 6.24662 6.25174 6.34063 6.39967 6.52650 6.71433 6.71800 6.76746 6.89418 7.36921 7.58376 7.69266 7.80970 8.17529 8.39868 9.23980 9.87715 10.36144 11.32225 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.002560 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.973067 B =10933.501326 C =11855.276961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.599 5.599 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.163 3.837 12 C -0.117 4.117 13 H 0.083 0.917 14 C -0.118 4.118 15 C 0.103 3.897 16 N -0.608 5.608 17 C 0.562 3.438 18 O -0.541 6.541 19 C -0.133 4.133 20 C -0.107 4.107 21 C -0.139 4.139 22 C -0.103 4.103 23 H 0.116 0.884 24 C -0.046 4.046 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.116 4.116 29 C -0.110 4.110 30 C 0.109 3.891 31 H 0.022 0.978 32 H 0.046 0.954 33 H -0.001 1.001 34 H 0.253 0.747 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.123 0.877 51 H 0.066 0.934 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 -18.191 -18.067 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.321 5.321 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.034 3.966 12 C -0.139 4.139 13 H 0.102 0.898 14 C -0.156 4.156 15 C -0.020 4.020 16 N -0.341 5.341 17 C 0.350 3.650 18 O -0.418 6.418 19 C -0.136 4.136 20 C -0.164 4.164 21 C -0.176 4.176 22 C -0.121 4.121 23 H 0.134 0.866 24 C -0.046 4.046 25 C -0.136 4.136 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.134 4.134 29 C -0.128 4.128 30 C -0.013 4.013 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.018 0.982 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.141 0.859 51 H 0.084 0.916 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.803 -18.270 -17.745 25.482 hybrid contribution 0.220 1.064 -0.197 1.104 sum -0.583 -17.206 -17.942 24.866 Atomic orbital electron populations 1.20802 0.82654 0.96183 0.98576 1.43843 1.01791 1.00511 1.85972 1.19142 0.97702 0.85416 1.36204 0.91499 1.24976 0.97978 0.98422 0.98275 1.70071 1.19705 1.27148 1.38352 0.86366 0.78423 0.83934 0.78012 1.21136 1.21675 1.20948 1.20601 0.96340 0.88628 0.90984 1.23219 0.93899 0.95018 1.01771 0.89834 1.22647 0.98140 0.97939 0.96896 1.22151 0.82996 0.97906 0.98927 1.48527 1.17568 1.45131 1.22893 1.19122 0.83195 0.78008 0.84710 1.90702 1.23841 1.57729 1.69555 1.21495 1.02090 0.95077 0.94917 1.21273 1.02123 0.98300 0.94695 1.23263 0.97942 0.92531 1.03858 1.21297 0.88919 1.04066 0.97790 0.86569 1.19027 0.93821 0.98902 0.92896 1.21081 0.99951 1.00558 0.92006 1.21117 0.94387 0.99798 0.98357 1.21164 0.95737 0.99796 0.97586 1.21160 0.99929 0.99789 0.92528 1.21014 0.93525 0.99271 0.98992 1.22379 1.00409 0.94042 0.84505 0.96009 0.93492 0.98239 0.93726 0.94323 0.93183 0.90942 0.89864 0.91678 0.91939 0.91484 0.91675 0.91256 0.87715 0.87486 0.85923 0.86147 0.86215 0.85923 0.85875 0.91575 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 8.79 59.85 0.53 4.35 16 2 N -0.60 -14.41 2.89 -181.13 -0.52 -14.93 16 3 C -0.26 -6.85 9.66 -15.06 -0.15 -7.00 16 4 H 0.07 1.77 7.87 -52.49 -0.41 1.35 16 5 C 0.00 0.05 5.04 -17.43 -0.09 -0.04 16 6 N -0.91 -26.19 10.76 55.49 0.60 -25.60 16 7 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.16 3.15 5.17 -4.05 -0.02 3.13 16 12 C -0.12 -1.91 3.25 -88.47 -0.29 -2.19 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 14 C -0.12 -1.66 5.04 -24.90 -0.13 -1.78 16 15 C 0.10 1.24 6.05 -3.07 -0.02 1.22 16 16 N -0.61 -8.49 3.33 -170.52 -0.57 -9.06 16 17 C 0.56 8.18 6.95 -10.98 -0.08 8.10 16 18 O -0.54 -9.81 17.34 5.55 0.10 -9.72 16 19 C -0.13 -1.45 1.90 -155.66 -0.30 -1.74 16 20 C -0.11 -1.05 8.56 37.16 0.32 -0.73 16 21 C -0.14 -1.28 9.18 -26.73 -0.25 -1.53 16 22 C -0.10 -0.94 4.57 -91.77 -0.42 -1.36 16 23 H 0.12 1.08 7.38 -51.93 -0.38 0.70 16 24 C -0.05 -0.41 5.03 -104.62 -0.53 -0.93 16 25 C -0.12 -0.94 7.80 -39.58 -0.31 -1.25 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 28 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 29 C -0.11 -0.94 9.74 -39.58 -0.39 -1.32 16 30 C 0.11 1.64 6.36 -2.53 -0.02 1.62 16 31 H 0.02 0.56 7.60 -51.93 -0.39 0.16 16 32 H 0.05 1.20 7.03 -51.93 -0.36 0.84 16 33 H 0.00 -0.02 6.44 -51.93 -0.33 -0.35 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.04 0.70 7.90 -51.93 -0.41 0.29 16 36 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 37 H 0.07 0.99 7.57 -51.93 -0.39 0.60 16 38 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 39 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.06 0.64 6.76 -51.93 -0.35 0.29 16 41 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 43 H 0.07 0.56 6.00 -51.93 -0.31 0.25 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.11 0.79 6.09 -51.93 -0.32 0.47 16 46 H 0.12 0.83 5.16 -52.49 -0.27 0.56 16 47 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 51 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 52 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 LS Contribution 407.56 15.07 6.14 6.14 Total: -1.00 -31.56 407.56 -11.14 -42.70 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.55 Total: -0.83 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.31 Total: -5.38 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.49 Total: -49.59 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.10 Total: -9.72 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.56 -11.14 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714910589.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.444 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds