Wall clock time and date at job start Wed Apr 1 2020 02:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47503 * 2 1 4 4 C 1.53001 * 109.47262 * 300.00425 * 3 2 1 5 5 C 1.52992 * 109.47094 * 299.99664 * 4 3 2 6 6 C 1.53001 * 109.47434 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47528 * 175.00124 * 6 5 4 8 8 C 1.46906 * 110.99814 * 293.95568 * 7 6 5 9 9 C 1.46905 * 111.00158 * 170.00206 * 7 6 5 10 10 C 1.52997 * 109.47053 * 189.99961 * 9 7 6 11 11 N 1.46496 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.46506 * 120.00049 * 89.99922 * 11 10 9 13 13 C 1.34779 * 120.00180 * 270.00299 * 11 10 9 14 14 O 1.21281 * 119.99643 * 359.97438 * 13 11 10 15 15 C 1.50704 * 120.00167 * 179.97438 * 13 11 10 16 16 S 1.80993 * 109.47052 * 179.97438 * 15 13 11 17 17 C 1.76200 * 100.00109 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99652 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00185 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00148 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99755 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46950 * 90.00174 * 21 19 17 23 23 H 1.48507 * 109.46956 * 209.99635 * 21 19 17 24 24 H 1.48499 * 109.47488 * 329.99790 * 21 19 17 25 25 C 1.52998 * 109.47261 * 60.00265 * 5 4 3 26 26 C 1.53001 * 109.46850 * 299.99885 * 25 5 4 27 27 H 1.09001 * 109.47113 * 59.99126 * 1 2 3 28 28 H 1.08991 * 109.47036 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46559 * 299.99713 * 1 2 3 30 30 H 1.09003 * 109.47619 * 120.00816 * 2 1 3 31 31 H 1.09005 * 109.47798 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47300 * 60.00186 * 3 2 1 33 33 H 1.09004 * 109.47030 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.46959 * 59.99830 * 4 3 2 35 35 H 1.08997 * 109.47353 * 299.99924 * 5 4 3 36 36 H 1.09009 * 109.46667 * 54.99942 * 6 5 4 37 37 H 1.09002 * 109.47365 * 295.00439 * 6 5 4 38 38 H 1.08992 * 109.47459 * 59.99744 * 8 7 6 39 39 H 1.09004 * 109.47040 * 179.97438 * 8 7 6 40 40 H 1.09000 * 109.47033 * 299.99847 * 8 7 6 41 41 H 1.09002 * 109.46783 * 309.99945 * 9 7 6 42 42 H 1.09005 * 109.46676 * 69.99987 * 9 7 6 43 43 H 1.09002 * 109.47313 * 299.99660 * 10 9 7 44 44 H 1.08994 * 109.47205 * 59.99990 * 10 9 7 45 45 H 1.08997 * 109.46995 * 90.00253 * 12 11 10 46 46 H 1.08997 * 109.47197 * 210.00621 * 12 11 10 47 47 H 1.09003 * 109.46934 * 329.99720 * 12 11 10 48 48 H 1.09002 * 109.46757 * 300.00121 * 15 13 11 49 49 H 1.08998 * 109.46993 * 59.99220 * 15 13 11 50 50 H 0.97003 * 120.00197 * 180.02562 * 20 19 17 51 51 H 1.08997 * 109.47215 * 59.99575 * 25 5 4 52 52 H 1.08996 * 109.47488 * 180.02562 * 25 5 4 53 53 H 1.09007 * 109.47438 * 299.99919 * 26 25 5 54 54 H 1.09004 * 109.47715 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1638 -1.2492 5 6 2.0400 1.4426 -2.4984 6 6 1.5295 2.1635 -3.7476 7 7 2.1151 1.5443 -4.9441 8 6 3.5682 1.7551 -4.9883 9 6 1.4727 2.0479 -6.1655 10 6 1.9258 1.2099 -7.3627 11 7 1.2848 1.7117 -8.5807 12 6 1.9377 2.7548 -9.3757 13 6 0.0943 1.2138 -8.9698 14 8 -0.4460 0.3501 -8.3118 15 6 -0.5654 1.7304 -10.2224 16 16 -2.1383 0.8711 -10.4742 17 6 -2.6764 1.6474 -11.9616 18 1 -2.0665 2.4093 -12.4243 19 6 -3.8846 1.2807 -12.5381 20 7 -4.6282 0.3526 -11.9740 21 14 -4.4553 2.1043 -14.1146 22 1 -3.9501 1.3401 -15.2833 23 1 -5.9397 2.1352 -14.1476 24 1 -3.9301 3.4924 -14.1662 25 6 1.5299 0.0002 -2.4986 26 6 2.0399 -0.7212 -1.2494 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5140 0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9563 0.8900 33 1 1.8931 3.1916 -1.2489 34 1 0.4401 2.1638 -1.2491 35 1 3.1299 1.4426 -2.4985 36 1 1.8175 3.2140 -3.7041 37 1 0.4431 2.0863 -3.7933 38 1 4.0268 1.3110 -4.1049 39 1 3.9764 1.2863 -5.8837 40 1 3.7798 2.8242 -5.0089 41 1 0.3899 1.9778 -6.0619 42 1 1.7561 3.0887 -6.3224 43 1 3.0086 1.2800 -7.4663 44 1 1.6425 0.1692 -7.2058 45 1 2.5814 2.2920 -10.1237 46 1 1.1801 3.3604 -9.8729 47 1 2.5374 3.3880 -8.7219 48 1 -0.7475 2.8005 -10.1223 49 1 0.0870 1.5514 -11.0770 50 1 -5.4724 0.0960 -12.3770 51 1 0.4399 0.0002 -2.4985 52 1 1.8935 -0.5138 -3.3883 53 1 3.1300 -0.7213 -1.2494 54 1 1.6770 -1.7490 -1.2496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715769976.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:47 Heat of formation + Delta-G solvation = -73.887621 kcal Electronic energy + Delta-G solvation = -27929.164139 eV Core-core repulsion = 24218.439266 eV Total energy + Delta-G solvation = -3710.724874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.94732 -40.36876 -38.36313 -36.50000 -34.58854 -33.67591 -31.77257 -31.55892 -29.61896 -28.64220 -27.69804 -27.62909 -26.90308 -24.90768 -23.49777 -22.49589 -21.27857 -20.58965 -19.53459 -19.47971 -18.07664 -17.45482 -16.92524 -16.87899 -16.62563 -16.34123 -16.24564 -15.60727 -15.59408 -15.42406 -14.79232 -14.63983 -14.53875 -14.33998 -14.22128 -14.03652 -13.60206 -13.55954 -13.43464 -13.19388 -13.13292 -13.06285 -12.93010 -12.88467 -12.83714 -12.61624 -12.53791 -12.39852 -12.09254 -11.90347 -11.80276 -11.69308 -11.64907 -11.14515 -10.99477 -10.91600 -10.84625 -10.77922 -10.26681 -9.74327 -9.24490 -8.67919 -8.34699 -6.13315 1.25423 1.42356 1.45700 1.56057 1.57658 2.07809 2.27294 2.99242 3.00756 3.27605 3.68121 3.72634 3.85693 3.91253 3.97980 4.07331 4.17727 4.20437 4.26962 4.32442 4.36201 4.42082 4.47079 4.50996 4.52232 4.57579 4.59564 4.67754 4.70119 4.73037 4.77622 4.83266 4.88904 4.91185 4.91669 4.98018 5.03770 5.05723 5.10898 5.19093 5.23666 5.28253 5.33405 5.41311 5.46006 5.53052 5.54691 5.60508 5.70607 6.06309 6.13910 6.19479 6.27821 7.06226 7.15226 8.74571 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.017343 B = 0.001906 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.088038 B =14683.606105 C =15697.347987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.108 4.108 4 C -0.115 4.115 5 C -0.072 4.072 6 C 0.062 3.938 7 N -0.547 5.547 8 C 0.019 3.981 9 C 0.053 3.947 10 C 0.125 3.875 11 N -0.612 5.612 12 C 0.072 3.928 13 C 0.528 3.472 14 O -0.563 6.563 15 C -0.122 4.122 16 S -0.155 6.155 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.257 1.257 25 C -0.105 4.105 26 C -0.112 4.112 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.109 0.891 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.271 0.729 51 H 0.046 0.954 52 H 0.057 0.943 53 H 0.065 0.935 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.648 7.396 20.703 30.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.145 4.145 4 C -0.153 4.153 5 C -0.090 4.090 6 C -0.065 4.065 7 N -0.271 5.271 8 C -0.128 4.128 9 C -0.076 4.076 10 C 0.002 3.998 11 N -0.346 5.346 12 C -0.070 4.070 13 C 0.316 3.684 14 O -0.441 6.441 15 C -0.274 4.274 16 S 0.072 5.928 17 C -0.693 4.693 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.142 4.142 26 C -0.149 4.149 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.117 0.883 48 H 0.126 0.874 49 H 0.126 0.874 50 H 0.080 0.920 51 H 0.065 0.935 52 H 0.076 0.924 53 H 0.084 0.916 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 20.647 5.538 21.692 30.456 hybrid contribution -0.228 1.872 -1.711 2.546 sum 20.420 7.410 19.981 29.515 Atomic orbital electron populations 1.21938 0.95811 1.01403 1.01716 1.21109 0.95577 0.96360 0.97954 1.21507 1.00696 0.94874 0.97461 1.21582 1.00792 0.98903 0.94014 1.21089 1.00513 0.94783 0.92644 1.22175 0.98768 0.95873 0.89728 1.61825 1.05106 1.58869 1.01332 1.22553 0.86806 0.99868 1.03589 1.22260 0.98372 0.96903 0.90053 1.21411 0.97944 0.98182 0.82219 1.47847 1.19758 1.40744 1.26271 1.22099 0.98624 0.89965 0.96325 1.20194 0.81229 0.81356 0.85621 1.90692 1.64120 1.32753 1.56505 1.23371 1.00805 1.04456 0.98724 1.85619 1.19066 1.54191 1.33922 1.23190 1.09167 1.26299 1.10601 0.89854 1.26155 0.95488 0.95624 1.02013 1.70190 1.13146 1.30420 1.41044 0.84939 0.77332 0.78865 0.76747 1.19265 1.20335 1.18084 1.21439 0.99825 0.95364 0.97619 1.21558 1.00567 0.98538 0.94283 0.92865 0.93278 0.92428 0.90899 0.91492 0.91495 0.91579 0.92378 0.90423 0.94289 0.92691 0.90330 0.90579 0.94891 0.93722 0.93531 0.87340 0.91973 0.90846 0.90710 0.88334 0.87441 0.87445 0.92006 0.93525 0.92435 0.91635 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.50 71.98 0.61 -1.62 16 2 C -0.09 -1.21 3.20 -10.79 -0.03 -1.24 16 3 C -0.11 -1.26 5.45 30.59 0.17 -1.09 16 4 C -0.11 -1.54 4.93 30.59 0.15 -1.38 16 5 C -0.07 -1.09 2.11 -10.80 -0.02 -1.12 16 6 C 0.06 1.15 4.35 86.30 0.38 1.52 16 7 N -0.55 -10.75 4.22 -922.41 -3.89 -14.64 16 8 C 0.02 0.27 9.13 127.69 1.17 1.43 16 9 C 0.05 1.22 5.28 86.30 0.46 1.68 16 10 C 0.13 2.98 5.34 86.38 0.46 3.44 16 11 N -0.61 -16.53 2.87 -846.76 -2.43 -18.96 16 12 C 0.07 1.24 10.24 127.77 1.31 2.55 16 13 C 0.53 20.48 7.69 87.66 0.67 21.16 16 14 O -0.56 -27.27 15.44 -3.03 -0.05 -27.31 16 15 C -0.12 -4.99 4.71 71.24 0.34 -4.65 16 16 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 17 C -0.54 -31.37 9.50 67.95 0.65 -30.73 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.68 5.49 84.86 0.47 1.15 16 20 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 21 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 C -0.10 -1.91 4.81 30.59 0.15 -1.76 16 26 C -0.11 -1.68 5.45 30.60 0.17 -1.51 16 27 H 0.05 0.90 4.81 -2.39 -0.01 0.88 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.06 0.89 6.43 -2.39 -0.02 0.87 16 35 H 0.08 1.08 6.34 -2.39 -0.02 1.06 16 36 H 0.04 0.65 8.12 -2.38 -0.02 0.63 16 37 H 0.05 1.22 7.93 -2.39 -0.02 1.20 16 38 H 0.08 0.96 6.37 -2.39 -0.02 0.95 16 39 H 0.08 0.93 6.30 -2.38 -0.02 0.92 16 40 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.04 1.35 7.93 -2.39 -0.02 1.33 16 42 H 0.05 0.92 8.12 -2.38 -0.02 0.90 16 43 H 0.11 1.80 6.40 -2.39 -0.02 1.78 16 44 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.34 6.44 -2.39 -0.02 1.33 16 47 H 0.10 1.11 8.07 -2.39 -0.02 1.09 16 48 H 0.11 3.95 7.40 -2.39 -0.02 3.93 16 49 H 0.11 3.96 8.11 -2.40 -0.02 3.94 16 50 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.05 0.99 6.43 -2.39 -0.02 0.97 16 52 H 0.06 1.24 7.75 -2.39 -0.02 1.22 16 53 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 54 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -76.04 421.29 2.70 -73.34 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.85 Total: 20.21 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 7.07 Total: -12.18 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -6.04 Total: -89.91 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.31 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -76.04 2.70 -73.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715769976.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.548 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds