Wall clock time and date at job start Wed Apr 1 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46030 * 2 1 4 4 C 1.34773 * 119.99923 * 60.03358 * 3 2 1 5 5 O 1.21275 * 120.00425 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99996 * 179.97438 * 4 3 2 7 7 C 1.50701 * 109.47367 * 179.97438 * 6 4 3 8 8 C 1.38251 * 120.02858 * 89.99814 * 7 6 4 9 9 C 1.38106 * 119.93170 * 179.97438 * 8 7 6 10 10 C 1.38506 * 120.21454 * 0.02562 * 9 8 7 11 11 C 1.38213 * 119.84852 * 359.97438 * 10 9 8 12 12 C 1.38105 * 120.03118 * 269.72333 * 7 6 4 13 13 C 1.51368 * 109.76034 * 180.02562 * 11 10 9 14 14 C 1.54350 * 105.16876 * 17.18881 * 13 11 10 15 15 C 1.51369 * 130.39124 * 180.02562 * 10 9 8 16 16 C 1.53041 * 109.45153 * 240.02785 * 2 1 3 17 17 C 1.53201 * 109.33508 * 178.61463 * 16 2 1 18 18 N 1.46998 * 108.73728 * 54.61891 * 17 16 2 19 19 C 1.36935 * 120.60901 * 126.38876 * 18 17 16 20 20 H 1.07998 * 119.99952 * 207.67649 * 19 18 17 21 21 C 1.38815 * 119.99918 * 27.68672 * 19 18 17 22 22 N 1.31614 * 120.00332 * 17.35531 * 21 19 18 23 23 Si 1.86808 * 119.99812 * 197.35895 * 21 19 18 24 24 H 1.48506 * 109.46866 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47167 * 119.99620 * 23 21 19 26 26 H 1.48494 * 109.47081 * 240.00049 * 23 21 19 27 27 C 1.46917 * 118.75901 * 306.41085 * 18 17 16 28 28 C 1.53042 * 109.44926 * 119.97155 * 2 1 3 29 29 H 1.09000 * 109.47419 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46425 * 299.96875 * 1 2 3 31 31 H 1.08995 * 109.47441 * 59.96438 * 1 2 3 32 32 H 0.96999 * 119.99797 * 240.02691 * 3 2 1 33 33 H 1.09004 * 109.46933 * 299.99786 * 6 4 3 34 34 H 1.08997 * 109.47075 * 59.99732 * 6 4 3 35 35 H 1.07998 * 120.03960 * 0.02562 * 8 7 6 36 36 H 1.07997 * 119.89750 * 180.02562 * 9 8 7 37 37 H 1.07999 * 119.88895 * 0.02562 * 12 7 6 38 38 H 1.09005 * 110.30283 * 136.10944 * 13 11 10 39 39 H 1.08998 * 110.30727 * 258.17014 * 13 11 10 40 40 H 1.08998 * 110.82329 * 91.87757 * 14 13 11 41 41 H 1.08997 * 110.82538 * 215.22879 * 14 13 11 42 42 H 1.09001 * 110.29912 * 281.69916 * 15 10 9 43 43 H 1.08991 * 110.30484 * 43.85309 * 15 10 9 44 44 H 1.08997 * 109.50147 * 298.57816 * 16 2 1 45 45 H 1.09000 * 109.50014 * 58.65289 * 16 2 1 46 46 H 1.08996 * 109.58609 * 174.44365 * 17 16 2 47 47 H 1.09008 * 109.58351 * 294.86740 * 17 16 2 48 48 H 0.97007 * 120.00009 * 179.97438 * 22 21 19 49 49 H 1.09006 * 109.58747 * 293.82170 * 27 18 17 50 50 H 1.09000 * 109.58776 * 173.39572 * 27 18 17 51 51 H 1.08999 * 109.49529 * 301.32469 * 28 2 1 52 52 H 1.08999 * 109.49936 * 61.38808 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6929 2.2109 1.0112 5 8 0.9959 1.8141 1.9208 6 6 2.1954 3.6316 1.0115 7 6 1.6931 4.3420 2.2420 8 6 2.4396 4.3223 3.4054 9 6 1.9775 4.9744 4.5318 10 6 0.7677 5.6481 4.5001 11 6 0.0215 5.6677 3.3369 12 6 0.4893 5.0179 2.2067 13 6 -1.2477 6.4628 3.5564 14 6 -0.9908 7.2887 4.8348 15 6 0.0513 6.4290 5.5809 16 6 2.0397 -0.7209 -1.2501 17 6 3.5713 -0.6892 -1.2650 18 7 4.0675 -1.2495 0.0002 19 6 4.9751 -2.2748 0.0002 20 1 5.0078 -2.9670 0.8286 21 6 5.8533 -2.4245 -1.0644 22 7 6.0598 -1.4229 -1.8929 23 14 6.7419 -4.0475 -1.3212 24 1 6.3395 -5.0053 -0.2600 25 1 6.3842 -4.6026 -2.6513 26 1 8.2085 -3.8245 -1.2559 27 6 3.5712 -0.6891 1.2644 28 6 2.0396 -0.7209 1.2501 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5134 0.8903 31 1 -0.3634 0.5144 -0.8896 32 1 2.5754 1.6987 -0.7277 33 1 3.2855 3.6314 1.0112 34 1 1.8320 4.1458 0.1217 35 1 3.3835 3.7982 3.4334 36 1 2.5613 4.9590 5.4402 37 1 -0.0913 5.0362 1.2962 38 1 -1.4311 7.1239 2.7094 39 1 -2.0941 5.7916 3.7018 40 1 -0.5797 8.2675 4.5876 41 1 -1.9044 7.3907 5.4203 42 1 -0.4454 5.7487 6.2727 43 1 0.7547 7.0668 6.1160 44 1 1.6974 -1.7557 -1.2383 45 1 1.6568 -0.2211 -2.1399 46 1 3.9410 -1.2850 -2.0994 47 1 3.9144 0.3404 -1.3680 48 1 6.6738 -1.5274 -2.6367 49 1 3.9143 0.3404 1.3675 50 1 3.9413 -1.2851 2.0986 51 1 1.6571 -0.2208 2.1398 52 1 1.6968 -1.7555 1.2386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716800107.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:55 Heat of formation + Delta-G solvation = -2.477152 kcal Electronic energy + Delta-G solvation = -30419.282576 eV Core-core repulsion = 26576.210341 eV Total energy + Delta-G solvation = -3843.072235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.44224 -39.78103 -37.48998 -35.93311 -34.33838 -32.41794 -31.75191 -30.98528 -30.23786 -29.84649 -27.90053 -27.40187 -26.32306 -24.06999 -22.71304 -22.28020 -21.52567 -20.95429 -20.58479 -19.74566 -18.61215 -17.08493 -16.62614 -16.23677 -15.97283 -15.34165 -15.05781 -14.86321 -14.77379 -14.29852 -13.90223 -13.67536 -13.39958 -13.31335 -13.28683 -13.09489 -13.06568 -12.93145 -12.50328 -12.45520 -11.96786 -11.87213 -11.66152 -11.61622 -11.41230 -11.30929 -11.22707 -11.14266 -11.01238 -10.92335 -10.76849 -10.72881 -10.34494 -10.25744 -9.86671 -9.74517 -9.59729 -9.09408 -8.73615 -8.57114 -8.45515 -8.37277 -6.66500 -5.80459 -3.21050 1.31896 1.42253 2.99704 3.35995 3.44366 3.46705 3.47077 3.87257 4.23889 4.40344 4.49503 4.72329 4.75457 4.92087 4.98366 5.08368 5.12992 5.31459 5.33848 5.40343 5.45794 5.48149 5.48741 5.50781 5.53415 5.57464 5.59320 5.63921 5.64748 5.74330 5.91778 6.01527 6.06481 6.08000 6.16823 6.21375 6.33371 6.35548 6.40890 6.44614 6.54656 6.60251 6.62699 6.72347 6.73858 6.85622 6.98521 7.01365 7.13033 7.29965 7.58163 7.79186 7.97626 8.44124 8.63532 9.20801 9.84555 10.41496 11.28144 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.002373 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.599479 B =11794.649941 C =12286.311904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.185 3.815 3 N -0.711 5.711 4 C 0.517 3.483 5 O -0.535 6.535 6 C -0.106 4.106 7 C -0.055 4.055 8 C -0.102 4.102 9 C -0.106 4.106 10 C -0.104 4.104 11 C -0.100 4.100 12 C -0.093 4.093 13 C -0.081 4.081 14 C -0.120 4.120 15 C -0.081 4.081 16 C -0.146 4.146 17 C 0.172 3.828 18 N -0.591 5.591 19 C -0.248 4.248 20 H 0.065 0.935 21 C 0.000 4.000 22 N -0.904 5.904 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.152 3.848 28 C -0.142 4.142 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.399 0.601 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.089 0.911 47 H 0.016 0.984 48 H 0.252 0.748 49 H 0.014 0.986 50 H 0.049 0.951 51 H 0.072 0.928 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 16.702 7.578 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.100 3.900 3 N -0.363 5.363 4 C 0.302 3.698 5 O -0.412 6.412 6 C -0.146 4.146 7 C -0.056 4.056 8 C -0.120 4.120 9 C -0.124 4.124 10 C -0.104 4.104 11 C -0.100 4.100 12 C -0.111 4.111 13 C -0.118 4.118 14 C -0.158 4.158 15 C -0.118 4.118 16 C -0.186 4.186 17 C 0.046 3.954 18 N -0.314 5.314 19 C -0.377 4.377 20 H 0.083 0.917 21 C -0.198 4.198 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.026 3.974 28 C -0.182 4.182 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.234 0.766 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.034 0.966 48 H 0.062 0.938 49 H 0.032 0.968 50 H 0.068 0.932 51 H 0.091 0.909 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.316 16.389 8.098 22.616 hybrid contribution 0.908 -0.809 -0.704 1.405 sum -12.408 15.580 7.394 21.245 Atomic orbital electron populations 1.22219 0.95587 1.01752 1.02233 1.20230 0.92456 0.80285 0.97027 1.46165 1.53104 1.12121 1.24910 1.20298 0.80480 0.86896 0.82091 1.90634 1.37903 1.77001 1.35640 1.20708 1.02963 0.93422 0.97508 1.19133 0.94787 0.97096 0.94562 1.20898 1.00074 0.98759 0.92312 1.20538 0.95441 0.98123 0.98304 1.20519 0.94957 0.99196 0.95694 1.20457 0.96529 0.99129 0.93863 1.20378 0.95359 0.97736 0.97632 1.21026 0.95185 0.97465 0.98152 1.22281 0.98946 0.98447 0.96085 1.21018 0.97049 0.97425 0.96313 1.22524 1.01416 0.99979 0.94645 1.20754 0.86839 0.97039 0.90733 1.44070 1.48230 1.39665 0.99458 1.19243 1.09614 1.02859 1.06008 0.91728 1.25009 0.97290 0.97468 1.00021 1.70026 1.37897 1.28975 1.18044 0.86246 0.79141 0.83808 0.77744 1.20296 1.21599 1.21795 1.20816 0.90905 0.95996 0.89713 1.22383 0.98918 0.99551 0.97360 0.92405 0.90931 0.93476 0.76565 0.87916 0.88361 0.85898 0.86421 0.86645 0.90947 0.90362 0.91085 0.90716 0.90406 0.90948 0.91143 0.92831 0.89303 0.96617 0.93773 0.96764 0.93239 0.90906 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 8.40 37.16 0.31 -2.16 16 2 C 0.19 3.14 0.66 -131.78 -0.09 3.05 16 3 N -0.71 -10.93 4.10 -47.57 -0.19 -11.13 16 4 C 0.52 7.88 7.24 -10.99 -0.08 7.80 16 5 O -0.53 -9.76 12.25 5.56 0.07 -9.69 16 6 C -0.11 -1.27 5.83 -29.03 -0.17 -1.44 16 7 C -0.06 -0.71 4.37 -104.67 -0.46 -1.17 16 8 C -0.10 -1.32 9.70 -39.63 -0.38 -1.70 16 9 C -0.11 -1.27 10.04 -39.53 -0.40 -1.66 16 10 C -0.10 -1.19 6.14 -104.20 -0.64 -1.83 16 11 C -0.10 -1.16 6.14 -104.21 -0.64 -1.80 16 12 C -0.09 -1.15 9.69 -39.53 -0.38 -1.53 16 13 C -0.08 -0.71 6.77 -26.85 -0.18 -0.89 16 14 C -0.12 -0.87 7.08 -25.32 -0.18 -1.05 16 15 C -0.08 -0.69 6.77 -26.86 -0.18 -0.87 16 16 C -0.15 -2.64 4.95 -26.61 -0.13 -2.77 16 17 C 0.17 3.87 5.04 -3.67 -0.02 3.85 16 18 N -0.59 -14.51 3.00 -172.26 -0.52 -15.03 16 19 C -0.25 -6.74 9.59 -15.06 -0.14 -6.89 16 20 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 21 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 22 N -0.90 -25.58 11.19 55.49 0.62 -24.96 16 23 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.15 3.30 6.26 -3.72 -0.02 3.27 16 28 C -0.14 -2.70 4.67 -26.61 -0.12 -2.83 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.22 6.17 -51.93 -0.32 0.90 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 5.71 7.27 -40.82 -0.30 5.41 16 33 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 47 H 0.02 0.36 6.94 -51.92 -0.36 0.00 16 48 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.01 0.32 7.74 -51.93 -0.40 -0.08 16 50 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 51 H 0.07 1.42 6.20 -51.93 -0.32 1.10 16 52 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 400.08 15.07 6.03 6.03 Total: -1.00 -31.26 400.08 -11.75 -43.01 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -8.73 Total: 5.95 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -4.00 Total: -10.70 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.09 Total: -51.11 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.26 -11.75 -43.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716800107.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.532 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds