Wall clock time and date at job start Wed Apr 1 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 110.30763 * 2 1 4 4 N 1.46498 * 109.47182 * 60.71781 * 3 2 1 5 5 C 1.36937 * 119.99959 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99604 * 0.02562 * 5 4 3 7 7 C 1.38807 * 119.99947 * 179.97438 * 5 4 3 8 8 N 1.31623 * 120.00168 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99991 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47052 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.46992 * 299.99885 * 9 7 5 12 12 H 1.48490 * 109.47283 * 59.99975 * 9 7 5 13 13 C 1.54292 * 110.34220 * 122.17143 * 2 1 3 14 14 C 1.54388 * 104.96020 * 118.97415 * 13 2 1 15 15 N 1.48151 * 104.61739 * 23.87081 * 14 13 2 16 16 C 1.34765 * 127.84003 * 140.39364 * 15 14 13 17 17 O 1.21280 * 120.00401 * 174.90032 * 16 15 14 18 18 C 1.50709 * 120.00046 * 354.89943 * 16 15 14 19 19 H 1.09001 * 109.24798 * 335.60690 * 18 16 15 20 20 C 1.52725 * 109.25363 * 95.08289 * 18 16 15 21 21 C 1.53332 * 108.37119 * 171.36288 * 20 18 16 22 22 C 1.52740 * 108.37499 * 290.07210 * 21 20 18 23 23 C 1.50635 * 110.58521 * 51.05697 * 22 21 20 24 24 C 1.38911 * 117.75068 * 162.52792 * 23 22 21 25 25 C 1.37935 * 120.54886 * 179.75916 * 24 23 22 26 26 C 1.38260 * 119.76956 * 0.02562 * 25 24 23 27 27 C 1.37935 * 119.77438 * 0.09580 * 26 25 24 28 28 C 1.37616 * 122.55589 * 342.43376 * 23 22 21 29 29 C 1.48149 * 104.32124 * 320.41490 * 15 14 13 30 30 H 1.09000 * 109.47004 * 60.70134 * 1 2 3 31 31 H 1.08993 * 109.47567 * 180.70407 * 1 2 3 32 32 H 1.09000 * 109.47649 * 300.70590 * 1 2 3 33 33 H 1.08999 * 109.46582 * 300.72021 * 3 2 1 34 34 H 1.09004 * 109.46679 * 180.72090 * 3 2 1 35 35 H 0.97002 * 120.00082 * 359.97438 * 4 3 2 36 36 H 0.97002 * 120.00384 * 179.97438 * 8 7 5 37 37 H 1.08990 * 110.34399 * 237.85075 * 13 2 1 38 38 H 1.09000 * 110.34081 * 0.02562 * 13 2 1 39 39 H 1.08994 * 110.40502 * 142.65372 * 14 13 2 40 40 H 1.09002 * 110.40929 * 265.08783 * 14 13 2 41 41 H 1.09002 * 109.68352 * 291.07806 * 20 18 16 42 42 H 1.08997 * 109.68633 * 51.64026 * 20 18 16 43 43 H 1.08996 * 109.68678 * 49.79521 * 21 20 18 44 44 H 1.08999 * 109.68570 * 170.35308 * 21 20 18 45 45 H 1.08997 * 109.25370 * 171.34337 * 22 21 20 46 46 H 1.09000 * 109.25510 * 290.77450 * 22 21 20 47 47 H 1.08002 * 119.72806 * 359.78629 * 24 23 22 48 48 H 1.07995 * 120.11299 * 180.02562 * 25 24 23 49 49 H 1.08002 * 120.11579 * 180.12215 * 26 25 24 50 50 H 1.07997 * 119.72696 * 180.02562 * 27 26 25 51 51 H 1.09012 * 110.40535 * 280.79835 * 29 15 14 52 52 H 1.09001 * 110.40611 * 158.37604 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0610 1.4350 0.0000 4 7 1.5969 2.1274 1.2047 5 6 1.9489 3.4327 1.4227 6 1 2.5684 3.9517 0.7062 7 6 1.5088 4.0889 2.5639 8 7 0.7534 3.4565 3.4367 9 14 1.9884 5.8697 2.8609 10 1 1.3958 6.3351 4.1405 11 1 3.4678 5.9785 2.9325 12 1 1.4836 6.7108 1.7462 13 6 2.0663 -0.7703 1.2246 14 6 2.8823 -1.9401 0.6335 15 7 3.2692 -1.4795 -0.7204 16 6 4.4461 -1.6624 -1.3510 17 8 4.5802 -1.3025 -2.5013 18 6 5.5958 -2.3142 -0.6266 19 1 5.4689 -2.1756 0.4471 20 6 5.6087 -3.8082 -0.9436 21 6 6.9007 -4.4108 -0.3790 22 6 8.0749 -3.8968 -1.2097 23 6 8.0253 -2.3957 -1.3249 24 6 9.1850 -1.7383 -1.7154 25 6 9.2029 -0.3651 -1.8442 26 6 8.0578 0.3640 -1.5821 27 6 6.9059 -0.2866 -1.1917 28 6 6.8861 -1.6700 -1.0614 29 6 2.0690 -0.7717 -1.2236 30 1 -0.3633 0.5029 -0.8962 31 1 -0.3634 -1.0275 0.0126 32 1 -0.3634 0.5247 0.8836 33 1 1.6947 1.9578 -0.8835 34 1 3.1508 1.4190 -0.0129 35 1 1.0396 1.6615 1.8476 36 1 0.4461 3.9149 4.2344 37 1 2.7079 -0.1264 1.8260 38 1 1.2397 -1.1490 1.8258 39 1 3.7690 -2.1288 1.2386 40 1 2.2674 -2.8377 0.5683 41 1 4.7467 -4.2891 -0.4813 42 1 5.5764 -3.9547 -2.0232 43 1 7.0247 -4.1058 0.6600 44 1 6.8559 -5.4982 -0.4401 45 1 9.0093 -4.1899 -0.7311 46 1 8.0293 -4.3355 -2.2065 47 1 10.0799 -2.3071 -1.9204 48 1 10.1083 0.1388 -2.1487 49 1 8.0650 1.4393 -1.6831 50 1 6.0118 0.2836 -0.9876 51 1 1.3270 -1.4870 -1.5789 52 1 2.3421 -0.0791 -2.0198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716866375.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:19 Heat of formation + Delta-G solvation = -9.499751 kcal Electronic energy + Delta-G solvation = -30760.650704 eV Core-core repulsion = 26917.273947 eV Total energy + Delta-G solvation = -3843.376758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -40.87438 -39.51854 -37.86919 -36.10500 -34.75268 -32.96153 -32.43939 -30.37502 -30.28519 -29.43745 -29.16320 -26.55304 -25.65036 -24.19499 -23.11396 -22.87734 -22.46983 -22.22215 -19.79286 -19.14987 -18.58544 -17.30618 -16.99634 -16.60720 -15.94808 -15.53337 -15.34842 -15.24879 -14.65912 -14.39169 -14.12183 -13.91588 -13.75402 -13.49980 -13.43297 -13.29727 -13.03592 -12.90912 -12.62051 -12.55680 -12.27668 -12.19381 -12.05832 -11.92424 -11.70544 -11.52805 -11.27399 -11.21035 -10.99638 -10.84881 -10.77889 -10.60835 -10.52476 -10.31997 -10.25598 -9.92992 -9.69650 -9.61389 -8.86743 -8.77489 -8.62302 -8.60383 -6.91135 -5.76872 -3.04620 1.30453 1.37721 2.65470 2.97961 3.44460 3.48821 3.49857 3.73396 4.28178 4.41789 4.47284 4.58768 4.73946 4.77511 4.80612 4.84858 4.97337 5.00875 5.08277 5.13027 5.18004 5.28334 5.31938 5.33151 5.45389 5.48867 5.52223 5.57724 5.62050 5.65213 5.71279 5.75815 5.77324 5.83983 5.92713 5.94966 6.00345 6.02659 6.07265 6.10324 6.25096 6.31049 6.44016 6.44654 6.52050 6.57829 6.58503 6.68167 6.80593 6.88327 6.98019 7.62191 7.70663 8.22028 8.42667 9.54145 10.11492 10.47149 11.45991 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011780 B = 0.003121 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.311176 B = 8970.034348 C =10443.608549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C 0.169 3.831 4 N -0.728 5.728 5 C -0.238 4.238 6 H 0.068 0.932 7 C -0.013 4.013 8 N -0.935 5.935 9 Si 0.906 3.094 10 H -0.291 1.291 11 H -0.286 1.286 12 H -0.286 1.286 13 C -0.125 4.125 14 C 0.099 3.901 15 N -0.619 5.619 16 C 0.541 3.459 17 O -0.535 6.535 18 C -0.063 4.063 19 H 0.101 0.899 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.081 4.081 23 C -0.072 4.072 24 C -0.127 4.127 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.094 4.094 28 C -0.060 4.060 29 C 0.116 3.884 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.118 0.882 51 H 0.069 0.931 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.550 -18.900 -7.577 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.081 4.081 3 C 0.041 3.959 4 N -0.373 5.373 5 C -0.369 4.369 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.217 1.217 11 H -0.213 1.213 12 H -0.213 1.213 13 C -0.163 4.163 14 C -0.024 4.024 15 N -0.353 5.353 16 C 0.329 3.671 17 O -0.411 6.411 18 C -0.084 4.084 19 H 0.119 0.881 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.117 4.117 23 C -0.072 4.072 24 C -0.145 4.145 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.112 4.112 28 C -0.060 4.060 29 C -0.007 4.007 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.136 0.864 51 H 0.088 0.912 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.796 -18.555 -8.273 23.492 hybrid contribution -0.021 1.112 0.493 1.216 sum 11.775 -17.444 -7.780 22.438 Atomic orbital electron populations 1.21780 0.93281 1.00682 1.03197 1.21685 0.96241 0.96517 0.93699 1.20648 0.95903 0.88437 0.90907 1.42345 1.61622 1.11232 1.22089 1.19182 1.25620 0.88257 1.03857 0.91404 1.24695 1.00546 0.98250 0.97367 1.69638 1.39862 1.36403 1.12447 0.86287 0.77932 0.85032 0.77072 1.21698 1.21322 1.21305 1.22655 1.00139 0.96072 0.97475 1.22518 0.99238 0.97704 0.82931 1.49011 1.12927 1.55536 1.17786 1.19992 0.81845 0.78771 0.86460 1.90715 1.82176 1.51146 1.17112 1.20173 0.90909 0.96214 1.01056 0.88130 1.21484 0.98610 0.92029 1.02351 1.21542 0.93869 1.00216 0.99799 1.20483 0.99097 0.91334 1.00832 1.19478 0.92907 0.95329 0.99520 1.21050 0.97491 0.94593 1.01372 1.21054 0.98205 0.94151 1.00204 1.21069 0.92977 1.00061 0.99850 1.21199 0.98260 0.93790 0.97972 1.19011 0.93108 0.93259 1.00658 1.22426 0.85811 0.95277 0.97136 0.92713 0.93349 0.90915 0.96358 0.96506 0.78090 0.93514 0.89474 0.90298 0.90524 0.91124 0.90874 0.90777 0.91221 0.90910 0.90683 0.90588 0.86304 0.86193 0.85984 0.86352 0.91233 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.08 37.15 0.30 -1.63 16 2 C -0.08 -1.24 0.73 -153.11 -0.11 -1.35 16 3 C 0.17 3.41 4.90 -4.04 -0.02 3.39 16 4 N -0.73 -17.90 4.91 -59.91 -0.29 -18.19 16 5 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 9 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C -0.13 -1.76 5.78 -25.33 -0.15 -1.90 16 14 C 0.10 1.12 6.93 -2.41 -0.02 1.10 16 15 N -0.62 -8.45 3.32 -169.30 -0.56 -9.01 16 16 C 0.54 7.98 5.76 -10.99 -0.06 7.92 16 17 O -0.54 -9.83 16.13 5.56 0.09 -9.74 16 18 C -0.06 -0.74 2.28 -93.09 -0.21 -0.96 16 19 H 0.10 1.09 6.38 -51.93 -0.33 0.76 16 20 C -0.11 -1.00 5.24 -26.70 -0.14 -1.14 16 21 C -0.12 -0.88 5.98 -26.69 -0.16 -1.04 16 22 C -0.08 -0.67 5.67 -28.05 -0.16 -0.83 16 23 C -0.07 -0.82 5.74 -104.63 -0.60 -1.42 16 24 C -0.13 -1.36 9.61 -39.44 -0.38 -1.74 16 25 C -0.12 -1.32 10.05 -39.68 -0.40 -1.72 16 26 C -0.12 -1.58 10.05 -39.68 -0.40 -1.97 16 27 C -0.09 -1.37 8.52 -39.42 -0.34 -1.71 16 28 C -0.06 -0.79 5.11 -104.61 -0.53 -1.32 16 29 C 0.12 1.65 6.13 -2.41 -0.01 1.64 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.24 6.96 -51.93 -0.36 0.88 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.38 9.73 6.26 -40.82 -0.26 9.47 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.09 1.47 7.49 -51.93 -0.39 1.08 16 38 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 39 H 0.08 0.76 6.42 -51.93 -0.33 0.42 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.12 0.97 8.05 -52.49 -0.42 0.54 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 50 H 0.12 1.89 7.24 -52.49 -0.38 1.51 16 51 H 0.07 0.87 7.87 -51.92 -0.41 0.46 16 52 H 0.08 1.30 7.65 -51.93 -0.40 0.90 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -32.83 404.05 -11.33 -44.15 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.72 Total: 8.24 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.64 Total: -11.94 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.13 Total: -54.24 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.83 -11.33 -44.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716866375.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.654 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.75 seconds