Wall clock time and date at job start Wed Apr 1 2020 02:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 110.30181 * 2 1 4 4 N 1.46504 * 109.46936 * 299.27805 * 3 2 1 5 5 C 1.36939 * 119.99796 * 180.27837 * 4 3 2 6 6 H 1.08004 * 119.99514 * 359.72121 * 5 4 3 7 7 C 1.38803 * 120.00187 * 179.72358 * 5 4 3 8 8 N 1.31616 * 119.99923 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00209 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46832 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46862 * 120.00084 * 9 7 5 12 12 H 1.48491 * 109.47431 * 240.00280 * 9 7 5 13 13 C 1.54281 * 110.34063 * 237.82801 * 2 1 3 14 14 C 1.54395 * 104.95586 * 241.02327 * 13 2 1 15 15 N 1.48141 * 104.61943 * 23.86671 * 14 13 2 16 16 C 1.34774 * 127.83881 * 140.39480 * 15 14 13 17 17 O 1.21280 * 119.99962 * 174.97644 * 16 15 14 18 18 C 1.50699 * 119.99816 * 354.97578 * 16 15 14 19 19 H 1.08993 * 109.25437 * 23.35827 * 18 16 15 20 20 C 1.52743 * 109.25299 * 263.88894 * 18 16 15 21 21 C 1.53329 * 108.36641 * 188.61713 * 20 18 16 22 22 C 1.52729 * 108.38419 * 69.92103 * 21 20 18 23 23 C 1.50633 * 110.59286 * 308.96405 * 22 21 20 24 24 C 1.38913 * 117.74865 * 197.45840 * 23 22 21 25 25 C 1.37931 * 120.54469 * 180.25076 * 24 23 22 26 26 C 1.38258 * 119.77314 * 0.02562 * 25 24 23 27 27 C 1.37932 * 119.77003 * 359.88457 * 26 25 24 28 28 C 1.37658 * 122.57145 * 17.52287 * 23 22 21 29 29 C 1.48149 * 104.32445 * 320.41587 * 15 14 13 30 30 H 1.09005 * 109.47418 * 59.30019 * 1 2 3 31 31 H 1.09001 * 109.47172 * 179.29563 * 1 2 3 32 32 H 1.09005 * 109.47444 * 299.30146 * 1 2 3 33 33 H 1.08997 * 109.46652 * 179.27779 * 3 2 1 34 34 H 1.09001 * 109.47089 * 59.27722 * 3 2 1 35 35 H 0.96995 * 120.00250 * 0.02562 * 4 3 2 36 36 H 0.97002 * 120.00282 * 179.97438 * 8 7 5 37 37 H 1.09003 * 110.34873 * 359.88922 * 13 2 1 38 38 H 1.08998 * 110.34467 * 122.15126 * 13 2 1 39 39 H 1.08998 * 110.40899 * 142.65620 * 14 13 2 40 40 H 1.08999 * 110.40372 * 264.96378 * 14 13 2 41 41 H 1.09005 * 109.68473 * 308.33424 * 20 18 16 42 42 H 1.08996 * 109.68453 * 68.89856 * 20 18 16 43 43 H 1.09007 * 109.67734 * 189.64134 * 21 20 18 44 44 H 1.08998 * 109.68018 * 310.19222 * 21 20 18 45 45 H 1.08995 * 109.25449 * 69.25956 * 22 21 20 46 46 H 1.09011 * 109.25055 * 188.68143 * 22 21 20 47 47 H 1.07999 * 119.72584 * 0.24655 * 24 23 22 48 48 H 1.08002 * 120.11098 * 179.97438 * 25 24 23 49 49 H 1.08004 * 120.11518 * 179.85545 * 26 25 24 50 50 H 1.08004 * 119.72557 * 180.02562 * 27 26 25 51 51 H 1.09005 * 110.40763 * 280.80304 * 29 15 14 52 52 H 1.08998 * 110.40819 * 158.36699 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 7 1.5968 2.1273 -1.2048 5 6 1.9538 3.4307 -1.4259 6 1 2.5739 3.9496 -0.7098 7 6 1.5189 4.0850 -2.5702 8 7 0.7629 3.4528 -3.4425 9 14 2.0054 5.8632 -2.8714 10 1 2.8519 6.3417 -1.7491 11 1 2.7681 5.9593 -4.1420 12 1 0.7835 6.7021 -2.9629 13 6 2.0663 -0.7703 -1.2245 14 6 2.8824 -1.9400 -0.6333 15 7 2.3177 -2.1429 0.7212 16 6 2.0831 -3.3102 1.3528 17 8 1.6988 -3.3107 2.5031 18 6 2.2983 -4.6147 0.6296 19 1 3.0043 -4.4610 -0.1865 20 6 0.9671 -5.0999 0.0593 21 6 1.1622 -6.5219 -0.4801 22 6 1.3650 -7.4632 0.7055 23 6 2.4378 -6.9366 1.6224 24 6 3.0058 -7.8226 2.5292 25 6 3.9892 -7.4007 3.3994 26 6 4.4135 -6.0851 3.3702 27 6 3.8522 -5.2043 2.4693 28 6 2.8635 -5.6279 1.5904 29 6 2.0689 -0.7717 1.2238 30 1 -0.3634 0.5247 -0.8837 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5030 0.8962 33 1 3.1507 1.4191 0.0130 34 1 1.6946 1.9579 0.8834 35 1 1.0396 1.6614 -1.8477 36 1 0.4586 3.9101 -4.2421 37 1 1.2398 -1.1503 -1.8250 38 1 2.7080 -0.1264 -1.8259 39 1 2.7525 -2.8377 -1.2376 40 1 3.9376 -1.6740 -0.5712 41 1 0.2113 -5.1057 0.8448 42 1 0.6519 -4.4406 -0.7494 43 1 0.2793 -6.8254 -1.0429 44 1 2.0389 -6.5521 -1.1271 45 1 0.4302 -7.5507 1.2589 46 1 1.6576 -8.4467 0.3375 47 1 2.6745 -8.8503 2.5529 48 1 4.4257 -8.0954 4.1018 49 1 5.1816 -5.7482 4.0507 50 1 4.1845 -4.1769 2.4468 51 1 2.9969 -0.3224 1.5778 52 1 1.3253 -0.7880 2.0205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716866376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:34 Heat of formation + Delta-G solvation = -10.274105 kcal Electronic energy + Delta-G solvation = -30332.483024 eV Core-core repulsion = 26489.072688 eV Total energy + Delta-G solvation = -3843.410336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -40.95483 -39.58070 -37.92583 -36.18273 -34.81768 -33.02341 -32.46416 -30.46580 -30.24380 -29.49024 -29.25351 -26.71550 -25.60655 -24.24053 -23.12810 -22.96701 -22.61134 -22.23412 -19.84476 -19.17560 -18.57349 -17.36606 -17.10015 -16.71522 -15.88824 -15.60638 -15.49858 -15.30004 -14.70938 -14.47300 -14.05198 -13.99453 -13.84144 -13.65252 -13.44119 -13.37828 -13.10036 -12.88566 -12.68152 -12.57844 -12.41894 -12.28055 -12.17772 -11.83836 -11.66863 -11.62834 -11.33715 -11.16533 -11.02545 -10.89838 -10.84649 -10.61889 -10.56597 -10.39715 -10.21075 -9.93822 -9.75460 -9.64281 -8.91054 -8.89901 -8.74884 -8.64978 -6.93535 -5.79008 -3.07077 1.16909 1.22714 2.58021 2.92596 3.41793 3.48043 3.49817 3.59471 4.22414 4.33975 4.45988 4.56555 4.66737 4.71737 4.78341 4.79839 4.87950 4.92692 4.95723 5.09272 5.10429 5.18680 5.25282 5.33101 5.39359 5.46458 5.51092 5.54598 5.57972 5.58103 5.66315 5.70574 5.78456 5.83185 5.91250 5.92399 5.95439 5.98086 6.01381 6.13721 6.21459 6.27069 6.31186 6.35776 6.43474 6.44334 6.58760 6.66973 6.78791 6.82898 6.83574 7.57862 7.69232 8.15579 8.40250 9.51946 10.09269 10.44402 11.43919 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.002223 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.997027 B =12591.336354 C =13108.572630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C 0.167 3.833 4 N -0.729 5.729 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.123 4.123 14 C 0.097 3.903 15 N -0.619 5.619 16 C 0.540 3.460 17 O -0.536 6.536 18 C -0.062 4.062 19 H 0.099 0.901 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.082 4.082 23 C -0.069 4.069 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.098 4.098 28 C -0.059 4.059 29 C 0.116 3.884 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.385 0.615 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.115 0.885 51 H 0.072 0.928 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 -24.720 7.931 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.039 3.961 4 N -0.374 5.374 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.161 4.161 14 C -0.025 4.025 15 N -0.353 5.353 16 C 0.328 3.672 17 O -0.413 6.413 18 C -0.083 4.083 19 H 0.117 0.883 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.119 4.119 23 C -0.069 4.069 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.116 4.116 28 C -0.059 4.059 29 C -0.007 4.007 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.220 0.780 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.133 0.867 51 H 0.090 0.910 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.198 -24.654 8.639 26.459 hybrid contribution 0.177 1.037 -0.411 1.130 sum 4.375 -23.617 8.228 25.389 Atomic orbital electron populations 1.21778 0.93604 1.00443 1.02877 1.21671 0.96533 0.96160 0.93658 1.20659 0.95948 0.88378 0.91157 1.42365 1.61543 1.11428 1.22023 1.19266 1.25555 0.88360 1.03656 0.91187 1.24717 1.00571 0.98312 0.97386 1.69659 1.39923 1.36305 1.12339 0.86132 0.77592 0.84967 0.77597 1.20593 1.21918 1.21919 1.22640 1.00213 0.95846 0.97447 1.22546 0.98026 0.99277 0.82683 1.49055 1.62724 1.05608 1.17919 1.19993 0.77258 0.83665 0.86283 1.90716 1.46744 1.86851 1.16978 1.20177 0.99493 0.91214 0.97450 0.88268 1.21494 0.95146 0.96957 1.01009 1.21541 1.02465 0.94138 0.97261 1.20504 0.97204 0.98901 0.95288 1.19532 0.97376 0.92749 0.97285 1.21085 0.97574 0.99323 0.96344 1.21048 0.97586 0.96023 0.99011 1.21024 1.00441 0.93707 0.98996 1.21112 0.95936 0.99349 0.95216 1.19048 0.96727 0.93018 0.97112 1.22428 1.00925 0.80380 0.96959 0.91137 0.93759 0.92874 0.96116 0.96125 0.78048 0.93592 0.90977 0.88823 0.90603 0.90849 0.90690 0.90576 0.90747 0.91270 0.90449 0.90624 0.86204 0.86176 0.86141 0.86652 0.90987 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.08 37.16 0.30 -1.76 16 2 C -0.08 -1.22 0.73 -153.11 -0.11 -1.33 16 3 C 0.17 3.18 4.91 -4.04 -0.02 3.16 16 4 N -0.73 -17.46 4.91 -59.90 -0.29 -17.76 16 5 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.39 5.50 -17.44 -0.10 -0.49 16 8 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 9 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C -0.12 -1.72 5.78 -25.33 -0.15 -1.86 16 14 C 0.10 1.10 6.75 -2.41 -0.02 1.08 16 15 N -0.62 -8.10 3.32 -169.31 -0.56 -8.66 16 16 C 0.54 7.46 5.73 -10.99 -0.06 7.39 16 17 O -0.54 -9.36 16.19 5.56 0.09 -9.27 16 18 C -0.06 -0.68 2.24 -93.09 -0.21 -0.88 16 19 H 0.10 0.92 6.51 -51.93 -0.34 0.58 16 20 C -0.11 -1.02 5.24 -26.69 -0.14 -1.16 16 21 C -0.12 -0.86 5.98 -26.70 -0.16 -1.01 16 22 C -0.08 -0.63 5.67 -28.05 -0.16 -0.79 16 23 C -0.07 -0.70 5.74 -104.62 -0.60 -1.30 16 24 C -0.13 -1.16 9.61 -39.44 -0.38 -1.54 16 25 C -0.12 -1.10 10.05 -39.69 -0.40 -1.50 16 26 C -0.12 -1.29 10.05 -39.69 -0.40 -1.69 16 27 C -0.10 -1.17 8.54 -39.45 -0.34 -1.51 16 28 C -0.06 -0.68 5.11 -104.62 -0.54 -1.21 16 29 C 0.12 1.64 6.13 -2.41 -0.01 1.63 16 30 H 0.07 1.26 6.96 -51.93 -0.36 0.90 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.38 9.62 6.26 -40.82 -0.26 9.37 16 36 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.07 0.99 7.71 -51.93 -0.40 0.59 16 38 H 0.09 1.49 7.49 -51.93 -0.39 1.10 16 39 H 0.08 0.69 6.71 -51.93 -0.35 0.34 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.46 8.13 -51.92 -0.42 0.04 16 47 H 0.12 0.83 8.05 -52.49 -0.42 0.41 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 49 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 50 H 0.12 1.43 7.25 -52.48 -0.38 1.05 16 51 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 52 H 0.08 1.22 7.65 -51.93 -0.40 0.82 16 LS Contribution 404.27 15.07 6.09 6.09 Total: -1.00 -32.10 404.27 -11.34 -43.44 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.74 Total: 7.23 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.63 Total: -11.37 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.13 Total: -53.18 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.10 -11.34 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716866376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.165 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds