Wall clock time and date at job start Wed Apr 1 2020 02:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 110.64271 * 2 1 4 4 N 1.46502 * 109.46476 * 56.86200 * 3 2 1 5 5 C 1.36940 * 119.99515 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00288 * 359.97438 * 5 4 3 7 7 C 1.38813 * 119.99775 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00179 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99990 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47096 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46975 * 120.00369 * 9 7 5 12 12 H 1.48495 * 109.47194 * 240.00534 * 9 7 5 13 13 C 1.55151 * 110.87488 * 123.25279 * 2 1 3 14 14 C 1.55126 * 101.48754 * 82.76549 * 13 2 1 15 15 N 1.47426 * 104.72340 * 37.29738 * 14 13 2 16 16 C 1.34780 * 125.65186 * 155.82182 * 15 14 13 17 17 O 1.21277 * 120.00143 * 184.90871 * 16 15 14 18 18 C 1.50703 * 119.99709 * 4.89980 * 16 15 14 19 19 H 1.09000 * 109.21800 * 23.76246 * 18 16 15 20 20 C 1.52731 * 109.25553 * 264.30656 * 18 16 15 21 21 C 1.53319 * 108.38662 * 188.57875 * 20 18 16 22 22 C 1.52734 * 108.39770 * 69.84256 * 21 20 18 23 23 C 1.50630 * 110.58963 * 308.89984 * 22 21 20 24 24 C 1.38914 * 117.75066 * 197.66452 * 23 22 21 25 25 C 1.37932 * 120.54318 * 180.31827 * 24 23 22 26 26 C 1.38262 * 119.77199 * 0.11050 * 25 24 23 27 27 C 1.37929 * 119.77427 * 359.85260 * 26 25 24 28 28 C 1.37653 * 122.56345 * 18.14211 * 23 22 21 29 29 C 1.47029 * 108.69981 * 335.55089 * 15 14 13 30 30 H 1.08997 * 109.47179 * 183.14026 * 1 2 3 31 31 H 1.08996 * 109.46706 * 303.13593 * 1 2 3 32 32 H 1.08998 * 109.46975 * 63.13842 * 1 2 3 33 33 H 1.08993 * 109.46948 * 176.86119 * 3 2 1 34 34 H 1.09001 * 109.47278 * 296.86557 * 3 2 1 35 35 H 0.96999 * 120.00511 * 359.97438 * 4 3 2 36 36 H 0.97001 * 120.00084 * 179.97438 * 8 7 5 37 37 H 1.08998 * 111.00733 * 201.00611 * 13 2 1 38 38 H 1.08995 * 111.00595 * 324.85827 * 13 2 1 39 39 H 1.09004 * 110.49673 * 278.45174 * 14 13 2 40 40 H 1.08999 * 110.34598 * 156.05823 * 14 13 2 41 41 H 1.08997 * 109.68107 * 68.85457 * 20 18 16 42 42 H 1.09000 * 109.68259 * 308.30100 * 20 18 16 43 43 H 1.08997 * 109.68050 * 310.11406 * 21 20 18 44 44 H 1.09002 * 109.70754 * 189.58642 * 21 20 18 45 45 H 1.08995 * 109.25312 * 188.61243 * 22 21 20 46 46 H 1.09001 * 109.22001 * 69.16445 * 22 21 20 47 47 H 1.07999 * 119.72732 * 0.33740 * 24 23 22 48 48 H 1.08004 * 120.11399 * 180.02562 * 25 24 23 49 49 H 1.08004 * 120.11517 * 179.88330 * 26 25 24 50 50 H 1.07999 * 119.73073 * 179.97438 * 27 26 25 51 51 H 1.09001 * 109.87941 * 120.70650 * 29 15 14 52 52 H 1.08998 * 109.88100 * 241.71274 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.5349 2.1548 1.1566 5 6 1.8811 3.4631 1.3659 6 1 2.5485 3.9617 0.6786 7 6 1.3743 4.1484 2.4615 8 7 0.5614 3.5407 3.2994 9 14 1.8470 5.9329 2.7474 10 1 2.7668 6.3800 1.6705 11 1 0.6251 6.7766 2.7362 12 1 2.5248 6.0608 4.0625 13 6 2.0829 -0.7949 1.2123 14 6 2.0141 -2.2517 0.6838 15 7 2.3757 -2.1506 -0.7418 16 6 2.8902 -3.1435 -1.4941 17 8 3.2340 -2.9233 -2.6361 18 6 3.0384 -4.5274 -0.9162 19 1 2.3312 -4.6513 -0.0960 20 6 4.4601 -4.7023 -0.3861 21 6 4.6555 -6.1737 -0.0022 22 6 4.6845 -7.0062 -1.2823 23 6 3.4932 -6.6889 -2.1477 24 6 3.1583 -7.5960 -3.1451 25 6 2.0822 -7.3596 -3.9750 26 6 1.3315 -6.2097 -3.8151 27 6 1.6618 -5.3082 -2.8249 28 6 2.7461 -5.5437 -1.9890 29 6 2.0760 -0.7890 -1.2087 30 1 -0.3633 -1.0261 0.0563 31 1 -0.3632 0.5617 0.8605 32 1 -0.3633 0.4643 -0.9168 33 1 3.1577 1.4100 0.0563 34 1 1.7629 1.9356 -0.9167 35 1 0.9353 1.7072 1.7738 36 1 0.2075 4.0195 4.0652 37 1 3.1097 -0.5045 1.4346 38 1 1.4447 -0.6679 2.0867 39 1 1.0051 -2.6498 0.7920 40 1 2.7298 -2.8810 1.2129 41 1 4.6050 -4.0716 0.4910 42 1 5.1768 -4.4265 -1.1597 43 1 3.8299 -6.5009 0.6298 44 1 5.5972 -6.2918 0.5340 45 1 4.6688 -8.0647 -1.0231 46 1 5.5984 -6.7847 -1.8337 47 1 3.7452 -8.4937 -3.2716 48 1 1.8278 -8.0698 -4.7480 49 1 0.4889 -6.0181 -4.4631 50 1 1.0751 -4.4100 -2.7009 51 1 2.9850 -0.3160 -1.5802 52 1 1.3271 -0.8249 -1.9999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716866377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:50 Heat of formation + Delta-G solvation = -12.823998 kcal Electronic energy + Delta-G solvation = -30244.834485 eV Core-core repulsion = 26401.313577 eV Total energy + Delta-G solvation = -3843.520908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.99683 -39.62791 -37.94787 -36.19935 -34.84900 -33.03570 -32.48086 -30.47908 -30.32910 -29.48009 -29.16322 -26.77631 -25.66764 -24.29698 -23.08487 -22.98136 -22.53474 -22.25585 -19.84699 -19.18865 -18.70026 -17.37892 -16.94707 -16.77794 -16.00937 -15.76247 -15.51902 -15.20710 -14.63494 -14.39116 -14.09075 -14.03590 -13.87664 -13.85644 -13.54284 -13.17356 -13.10428 -12.90538 -12.69603 -12.57704 -12.48734 -12.28166 -12.09615 -11.87743 -11.70112 -11.62312 -11.51867 -11.32411 -11.03500 -10.92519 -10.85721 -10.62862 -10.58957 -10.35080 -10.24631 -9.96133 -9.75898 -9.63827 -8.91708 -8.89848 -8.74742 -8.59721 -6.93643 -5.79207 -3.07044 1.16741 1.22507 2.57345 2.95003 3.42046 3.48408 3.50122 3.59166 4.20447 4.33454 4.41705 4.56142 4.66555 4.69853 4.71299 4.76751 4.87203 4.91787 4.96750 5.07073 5.08555 5.18272 5.23608 5.29004 5.37465 5.39644 5.48117 5.53092 5.56700 5.57565 5.65078 5.68619 5.71466 5.82621 5.88279 5.93106 5.97307 5.98659 6.04948 6.08409 6.21901 6.29954 6.32261 6.35678 6.39736 6.43907 6.45098 6.64784 6.75125 6.82733 6.83221 7.52475 7.69629 8.15245 8.40191 9.51933 10.08780 10.44076 11.43829 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025000 B = 0.002187 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.730873 B =12801.592254 C =13287.668522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.168 3.832 4 N -0.728 5.728 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.115 4.115 14 C 0.095 3.905 15 N -0.614 5.614 16 C 0.532 3.468 17 O -0.535 6.535 18 C -0.062 4.062 19 H 0.100 0.900 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.082 4.082 23 C -0.070 4.070 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.098 4.098 28 C -0.058 4.058 29 C 0.119 3.881 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.385 0.615 36 H 0.254 0.746 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.115 0.885 51 H 0.069 0.931 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 -25.405 -8.279 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C 0.040 3.960 4 N -0.373 5.373 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.153 4.153 14 C -0.027 4.027 15 N -0.348 5.348 16 C 0.320 3.680 17 O -0.411 6.411 18 C -0.083 4.083 19 H 0.118 0.882 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.119 4.119 23 C -0.070 4.070 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.116 4.116 28 C -0.058 4.058 29 C -0.004 4.004 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.134 0.866 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.413 -25.174 -8.974 27.088 hybrid contribution -0.127 0.996 0.361 1.067 sum 4.285 -24.178 -8.613 26.022 Atomic orbital electron populations 1.21760 0.93296 1.00708 1.03183 1.21793 0.96440 0.96209 0.93390 1.20597 0.95682 0.87937 0.91743 1.42349 1.56960 1.10727 1.27286 1.19272 1.22798 0.87843 1.06887 0.91183 1.24714 1.00117 0.98320 0.97838 1.69655 1.36440 1.36170 1.16016 0.86128 0.77559 0.85014 0.77567 1.20584 1.21907 1.21908 1.22852 1.02807 0.91620 0.98031 1.22526 1.00244 0.99225 0.80747 1.48575 1.62725 1.11845 1.11665 1.20079 0.77012 0.85369 0.85503 1.90717 1.49057 1.83166 1.18172 1.20187 1.00022 0.90648 0.97430 0.88220 1.21505 0.94226 0.97462 1.01525 1.21538 1.02571 0.94222 0.97072 1.20501 0.95941 1.00242 0.95199 1.19527 0.96603 0.93978 0.96899 1.21083 0.97948 0.99398 0.95890 1.21051 0.95795 0.97506 0.99310 1.21029 1.00189 0.94606 0.98320 1.21118 0.96525 0.98723 0.95225 1.19033 0.95766 0.94282 0.96743 1.22039 1.00429 0.81142 0.96781 0.93546 0.90775 0.92653 0.96085 0.96063 0.78063 0.93594 0.90208 0.89233 0.91246 0.90822 0.90657 0.90656 0.91265 0.90772 0.90621 0.90454 0.86204 0.86168 0.86126 0.86648 0.91234 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.28 37.16 0.31 -1.67 16 2 C -0.08 -1.18 0.61 -152.67 -0.09 -1.27 16 3 C 0.17 3.27 5.08 -4.04 -0.02 3.25 16 4 N -0.73 -17.55 5.15 -59.91 -0.31 -17.86 16 5 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 9 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C -0.12 -1.58 5.74 -24.47 -0.14 -1.72 16 14 C 0.10 1.05 5.85 -2.41 -0.01 1.04 16 15 N -0.61 -8.07 3.33 -170.37 -0.57 -8.63 16 16 C 0.53 7.36 5.67 -10.98 -0.06 7.30 16 17 O -0.53 -9.38 16.18 5.56 0.09 -9.29 16 18 C -0.06 -0.66 2.06 -93.09 -0.19 -0.85 16 19 H 0.10 0.91 7.05 -51.93 -0.37 0.55 16 20 C -0.11 -1.00 5.23 -26.70 -0.14 -1.14 16 21 C -0.12 -0.82 5.98 -26.70 -0.16 -0.98 16 22 C -0.08 -0.62 5.67 -28.05 -0.16 -0.78 16 23 C -0.07 -0.70 5.74 -104.62 -0.60 -1.30 16 24 C -0.13 -1.15 9.61 -39.44 -0.38 -1.53 16 25 C -0.12 -1.10 10.05 -39.68 -0.40 -1.50 16 26 C -0.12 -1.29 10.05 -39.69 -0.40 -1.69 16 27 C -0.10 -1.18 8.54 -39.44 -0.34 -1.51 16 28 C -0.06 -0.67 5.10 -104.61 -0.53 -1.20 16 29 C 0.12 1.72 6.04 -3.06 -0.02 1.71 16 30 H 0.05 0.59 7.41 -51.93 -0.38 0.21 16 31 H 0.07 1.28 6.69 -51.93 -0.35 0.93 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.38 9.56 6.21 -40.82 -0.25 9.31 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 38 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 39 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 40 H 0.07 0.67 7.40 -51.93 -0.38 0.28 16 41 H 0.07 0.62 7.90 -51.93 -0.41 0.21 16 42 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 43 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.12 0.82 8.05 -52.49 -0.42 0.40 16 48 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 49 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 50 H 0.12 1.44 7.24 -52.49 -0.38 1.06 16 51 H 0.07 1.08 7.82 -51.93 -0.41 0.68 16 52 H 0.07 0.96 7.85 -51.93 -0.41 0.56 16 LS Contribution 403.98 15.07 6.09 6.09 Total: -1.00 -32.29 403.98 -11.34 -43.63 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.76 Total: 6.65 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.58 Total: -10.98 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.15 Total: -53.25 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.29 -11.34 -43.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716866377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.808 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds