Wall clock time and date at job start Wed Apr 1 2020 02:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.64605 * 2 1 4 4 N 1.46500 * 109.46777 * 300.70161 * 3 2 1 5 5 C 1.36939 * 119.99928 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00063 * 359.97438 * 5 4 3 7 7 C 1.38812 * 119.99811 * 179.97438 * 5 4 3 8 8 N 1.31617 * 120.00287 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99800 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46915 * 59.99761 * 9 7 5 11 11 H 1.48503 * 109.47158 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47042 * 300.00366 * 9 7 5 13 13 C 1.55160 * 110.72034 * 236.65792 * 2 1 3 14 14 C 1.54908 * 101.58614 * 277.14192 * 13 2 1 15 15 N 1.47420 * 104.82983 * 322.98945 * 14 13 2 16 16 C 1.34779 * 125.64762 * 204.08945 * 15 14 13 17 17 O 1.21276 * 120.00091 * 174.82851 * 16 15 14 18 18 C 1.50698 * 120.00061 * 354.83086 * 16 15 14 19 19 H 1.09009 * 109.25103 * 336.20828 * 18 16 15 20 20 C 1.52740 * 109.25694 * 95.67807 * 18 16 15 21 21 C 1.53330 * 108.36971 * 171.38428 * 20 18 16 22 22 C 1.52726 * 108.38522 * 290.08501 * 21 20 18 23 23 C 1.50633 * 110.59249 * 51.03033 * 22 21 20 24 24 C 1.38920 * 117.74616 * 162.54253 * 23 22 21 25 25 C 1.37933 * 120.54225 * 179.75366 * 24 23 22 26 26 C 1.38260 * 119.77763 * 359.97438 * 25 24 23 27 27 C 1.37936 * 119.76578 * 0.11651 * 26 25 24 28 28 C 1.37655 * 122.57355 * 342.48019 * 23 22 21 29 29 C 1.47016 * 108.70719 * 24.12951 * 15 14 13 30 30 H 1.09001 * 109.46823 * 296.86026 * 1 2 3 31 31 H 1.08998 * 109.47025 * 176.86205 * 1 2 3 32 32 H 1.09000 * 109.46715 * 56.85667 * 1 2 3 33 33 H 1.09003 * 109.46833 * 60.69502 * 3 2 1 34 34 H 1.08995 * 109.47300 * 180.69926 * 3 2 1 35 35 H 0.96999 * 119.99927 * 359.97438 * 4 3 2 36 36 H 0.96996 * 119.99794 * 180.02562 * 8 7 5 37 37 H 1.09000 * 111.00267 * 35.21765 * 13 2 1 38 38 H 1.08998 * 111.00180 * 159.06322 * 13 2 1 39 39 H 1.08995 * 110.36598 * 204.14932 * 14 13 2 40 40 H 1.09002 * 110.45922 * 81.87396 * 14 13 2 41 41 H 1.09001 * 109.68676 * 291.11003 * 20 18 16 42 42 H 1.08999 * 109.67688 * 51.63020 * 20 18 16 43 43 H 1.09008 * 109.67911 * 49.81107 * 21 20 18 44 44 H 1.08999 * 109.67675 * 170.32208 * 21 20 18 45 45 H 1.09004 * 109.25198 * 171.31645 * 22 21 20 46 46 H 1.08998 * 109.25457 * 290.74312 * 22 21 20 47 47 H 1.08002 * 119.72718 * 359.74888 * 24 23 22 48 48 H 1.08001 * 120.10828 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.11681 * 180.10285 * 26 25 24 50 50 H 1.08006 * 119.72628 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.88601 * 239.52133 * 29 15 14 52 52 H 1.08997 * 110.01778 * 118.42845 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0695 1.4317 0.0000 4 7 1.5817 2.1373 -1.1876 5 6 1.9364 3.4424 -1.4026 6 1 2.5754 3.9516 -0.6964 7 6 1.4747 4.1107 -2.5282 8 7 0.6955 3.4902 -3.3886 9 14 1.9579 5.8912 -2.8210 10 1 3.4359 5.9923 -2.9248 11 1 1.3396 6.3708 -4.0832 12 1 1.4831 6.7257 -1.6882 13 6 2.0790 -0.7977 -1.2124 14 6 2.0126 -2.2522 -0.6836 15 7 2.3716 -2.1519 0.7427 16 6 2.8849 -3.1453 1.4952 17 8 3.2311 -2.9247 2.6364 18 6 3.0288 -4.5301 0.9185 19 1 2.3197 -4.6540 0.0999 20 6 4.4491 -4.7090 0.3859 21 6 4.6401 -6.1817 0.0043 22 6 4.6716 -7.0114 1.2861 23 6 3.4846 -6.6885 2.1555 24 6 3.1536 -7.5902 3.1591 25 6 2.0808 -7.3493 3.9920 26 6 1.3284 -6.2011 3.8278 27 6 1.6543 -5.3055 2.8307 28 6 2.7328 -5.5474 1.9893 29 6 2.0760 -0.7892 1.2086 30 1 -0.3633 0.4643 0.9168 31 1 -0.3633 -1.0261 -0.0563 32 1 -0.3633 0.5619 -0.8605 33 1 1.7269 1.9490 0.8962 34 1 3.1591 1.4094 -0.0125 35 1 1.0075 1.6800 -1.8217 36 1 0.3732 3.9572 -4.1753 37 1 1.4397 -0.6699 -2.0859 38 1 3.1061 -0.5099 -1.4366 39 1 2.7293 -2.8809 -1.2119 40 1 1.0046 -2.6520 -0.7939 41 1 4.5937 -4.0802 -0.4926 42 1 5.1678 -4.4328 1.1574 43 1 3.8117 -6.5085 -0.6243 44 1 5.5798 -6.3022 -0.5349 45 1 4.6515 -8.0705 1.0293 46 1 5.5883 -6.7923 1.8337 47 1 3.7411 -8.4872 3.2882 48 1 1.8295 -8.0553 4.7697 49 1 0.4882 -6.0062 4.4779 50 1 1.0658 -4.4089 2.7028 51 1 2.9868 -0.3181 1.5782 52 1 1.3273 -0.8198 2.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716866378.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:58 Heat of formation + Delta-G solvation = -13.077512 kcal Electronic energy + Delta-G solvation = -30250.970463 eV Core-core repulsion = 26407.438562 eV Total energy + Delta-G solvation = -3843.531901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.57 seconds Orbital eigenvalues (eV) -40.99455 -39.62860 -37.94648 -36.19666 -34.83924 -33.03482 -32.48042 -30.47620 -30.32839 -29.48949 -29.17006 -26.76804 -25.65911 -24.29122 -23.07093 -22.98169 -22.54483 -22.25072 -19.84367 -19.19169 -18.69927 -17.37505 -16.93840 -16.77518 -16.00801 -15.75881 -15.51557 -15.20813 -14.62969 -14.39355 -14.08724 -14.03300 -13.87996 -13.85010 -13.53679 -13.17930 -13.10694 -12.90561 -12.69582 -12.57607 -12.46804 -12.28278 -12.09165 -11.87597 -11.70056 -11.61988 -11.51515 -11.32345 -11.03730 -10.92102 -10.82212 -10.62654 -10.58643 -10.35198 -10.27750 -9.99366 -9.75446 -9.63372 -8.91465 -8.88572 -8.74515 -8.59443 -6.93485 -5.78591 -3.06540 1.16820 1.22699 2.57505 2.95133 3.43413 3.47966 3.48777 3.59379 4.20708 4.33688 4.41836 4.56411 4.66779 4.70599 4.71785 4.77035 4.87452 4.91968 4.96990 5.07245 5.08694 5.18446 5.23772 5.28972 5.38078 5.40006 5.48551 5.53260 5.56977 5.57820 5.65452 5.68821 5.71711 5.82767 5.88264 5.93351 5.97561 5.98767 6.05457 6.08686 6.22494 6.30180 6.32627 6.35834 6.39911 6.44109 6.45782 6.64209 6.74852 6.82884 6.83369 7.52683 7.68888 8.15425 8.40800 9.52349 10.09172 10.44576 11.44296 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.002193 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.156606 B =12762.362736 C =13256.941999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.728 5.728 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.115 4.115 14 C 0.095 3.905 15 N -0.614 5.614 16 C 0.533 3.467 17 O -0.535 6.535 18 C -0.062 4.062 19 H 0.100 0.900 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.082 4.082 23 C -0.070 4.070 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.097 4.097 28 C -0.058 4.058 29 C 0.119 3.881 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.115 0.885 51 H 0.069 0.931 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -25.245 8.475 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.078 4.078 3 C 0.041 3.959 4 N -0.373 5.373 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.153 4.153 14 C -0.027 4.027 15 N -0.348 5.348 16 C 0.321 3.679 17 O -0.411 6.411 18 C -0.083 4.083 19 H 0.117 0.883 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.119 4.119 23 C -0.070 4.070 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.116 4.116 28 C -0.059 4.059 29 C -0.004 4.004 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.133 0.867 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.983 -25.014 9.155 26.933 hybrid contribution -0.092 0.995 -0.355 1.060 sum 3.891 -24.019 8.801 25.875 Atomic orbital electron populations 1.21767 0.93333 1.00726 1.03127 1.21799 0.96415 0.96214 0.93407 1.20592 0.95887 0.88051 0.91406 1.42318 1.59888 1.11194 1.23875 1.19180 1.24629 0.88190 1.04960 0.91297 1.24711 1.00361 0.98314 0.97527 1.69635 1.38506 1.36473 1.13700 0.86272 0.77891 0.84954 0.77093 1.21314 1.21720 1.21298 1.22807 1.02875 0.91600 0.98022 1.22477 1.00267 0.99246 0.80728 1.48562 1.62820 1.11764 1.11633 1.20067 0.76996 0.85384 0.85487 1.90716 1.48942 1.83216 1.18237 1.20176 1.00019 0.90623 0.97473 0.88253 1.21508 0.94241 0.97452 1.01517 1.21539 1.02580 0.94222 0.97058 1.20500 0.96002 1.00230 0.95151 1.19529 0.96518 0.94104 0.96818 1.21085 0.97989 0.99400 0.95864 1.21050 0.95802 0.97500 0.99297 1.21028 1.00172 0.94647 0.98310 1.21116 0.96636 0.98707 0.95097 1.19033 0.95779 0.94343 0.96724 1.22032 1.00456 0.81117 0.96797 0.92684 0.93530 0.90818 0.96053 0.96112 0.78082 0.93490 0.89199 0.90213 0.90832 0.91281 0.90651 0.90657 0.91260 0.90769 0.90622 0.90452 0.86205 0.86171 0.86128 0.86655 0.91235 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.29 37.16 0.31 -1.66 16 2 C -0.08 -1.18 0.61 -152.67 -0.09 -1.28 16 3 C 0.17 3.28 5.07 -4.04 -0.02 3.26 16 4 N -0.73 -17.55 5.13 -59.91 -0.31 -17.86 16 5 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 9 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C -0.12 -1.59 5.60 -24.58 -0.14 -1.73 16 14 C 0.10 1.06 5.83 -2.53 -0.01 1.04 16 15 N -0.61 -8.09 3.33 -170.53 -0.57 -8.66 16 16 C 0.53 7.38 5.67 -10.99 -0.06 7.32 16 17 O -0.53 -9.40 16.19 5.56 0.09 -9.30 16 18 C -0.06 -0.67 2.04 -93.09 -0.19 -0.86 16 19 H 0.10 0.91 7.06 -51.92 -0.37 0.55 16 20 C -0.11 -1.01 5.24 -26.69 -0.14 -1.15 16 21 C -0.12 -0.83 5.98 -26.70 -0.16 -0.99 16 22 C -0.08 -0.62 5.67 -28.06 -0.16 -0.78 16 23 C -0.07 -0.70 5.74 -104.61 -0.60 -1.30 16 24 C -0.13 -1.16 9.61 -39.44 -0.38 -1.54 16 25 C -0.12 -1.10 10.05 -39.68 -0.40 -1.50 16 26 C -0.12 -1.29 10.05 -39.68 -0.40 -1.69 16 27 C -0.10 -1.17 8.53 -39.44 -0.34 -1.51 16 28 C -0.06 -0.67 5.11 -104.62 -0.53 -1.21 16 29 C 0.12 1.73 6.05 -3.06 -0.02 1.71 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.59 7.42 -51.93 -0.39 0.21 16 32 H 0.07 1.26 6.84 -51.93 -0.36 0.91 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.38 9.56 6.29 -40.82 -0.26 9.31 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.09 1.29 8.04 -51.93 -0.42 0.87 16 38 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 39 H 0.07 0.67 7.40 -51.93 -0.38 0.29 16 40 H 0.07 0.69 7.70 -51.93 -0.40 0.29 16 41 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 42 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 43 H 0.07 0.46 8.10 -51.92 -0.42 0.04 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.12 0.82 8.05 -52.49 -0.42 0.40 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 49 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 50 H 0.12 1.44 7.25 -52.48 -0.38 1.06 16 51 H 0.07 1.08 7.82 -51.93 -0.41 0.68 16 52 H 0.07 0.96 7.84 -51.93 -0.41 0.56 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -32.23 404.12 -11.35 -43.58 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.78 Total: 6.74 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.58 Total: -10.99 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.15 Total: -53.27 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.23 -11.35 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716866378.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.504 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.57 seconds