Wall clock time and date at job start Wed Apr 1 2020 02:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.37045 * 2 1 4 4 N 1.46498 * 109.47269 * 302.19253 * 3 2 1 5 5 C 1.36944 * 119.99765 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99677 * 359.97438 * 5 4 3 7 7 C 1.38806 * 119.99630 * 180.02562 * 5 4 3 8 8 N 1.31622 * 120.00554 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99911 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46977 * 59.99787 * 9 7 5 11 11 H 1.48498 * 109.47157 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47135 * 300.00079 * 9 7 5 13 13 C 1.54622 * 110.32358 * 237.81224 * 2 1 3 14 14 C 1.54594 * 102.91195 * 262.80705 * 13 2 1 15 15 N 1.48123 * 103.42394 * 322.86733 * 14 13 2 16 16 C 1.34772 * 127.03258 * 219.29015 * 15 14 13 17 17 O 1.21284 * 119.99503 * 184.43788 * 16 15 14 18 18 C 1.50695 * 120.00244 * 4.43567 * 16 15 14 19 19 C 1.50702 * 112.85237 * 293.72298 * 18 16 15 20 20 C 1.38238 * 119.99887 * 291.89927 * 19 18 16 21 21 C 1.38227 * 120.00130 * 179.97438 * 20 19 18 22 22 C 1.38241 * 120.00045 * 359.97438 * 21 20 19 23 23 C 1.38238 * 119.99825 * 0.02562 * 22 21 20 24 24 C 1.38227 * 120.00261 * 111.87633 * 19 18 16 25 25 C 1.53780 * 113.69030 * 64.99218 * 18 16 15 26 26 C 1.53781 * 87.08256 * 89.12659 * 25 18 16 27 27 C 1.53779 * 87.07991 * 25.43352 * 26 25 18 28 28 C 1.47483 * 105.92907 * 39.02647 * 15 14 13 29 29 H 1.09003 * 109.46941 * 297.80702 * 1 2 3 30 30 H 1.08996 * 109.47303 * 57.80877 * 1 2 3 31 31 H 1.09004 * 109.47429 * 177.81131 * 1 2 3 32 32 H 1.08996 * 109.47159 * 62.19559 * 3 2 1 33 33 H 1.09000 * 109.46885 * 182.18993 * 3 2 1 34 34 H 0.96998 * 120.00056 * 359.97438 * 4 3 2 35 35 H 0.96998 * 120.00230 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.74250 * 21.29602 * 13 2 1 37 37 H 1.09003 * 110.73434 * 144.43467 * 13 2 1 38 38 H 1.09007 * 110.61568 * 204.35388 * 14 13 2 39 39 H 1.08999 * 110.54668 * 81.35299 * 14 13 2 40 40 H 1.08001 * 119.99882 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.00188 * 179.70320 * 21 20 19 42 42 H 1.08000 * 120.00218 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.99932 * 180.02562 * 23 22 21 44 44 H 1.08003 * 119.99925 * 359.97438 * 24 19 18 45 45 H 1.09005 * 113.61652 * 203.67485 * 25 18 16 46 46 H 1.08999 * 113.61128 * 334.57199 * 25 18 16 47 47 H 1.08993 * 113.61095 * 270.88133 * 26 25 18 48 48 H 1.09000 * 113.68610 * 139.99623 * 26 25 18 49 49 H 1.09000 * 113.61255 * 220.01643 * 27 26 25 50 50 H 1.09002 * 113.61258 * 89.11892 * 27 26 25 51 51 H 1.08994 * 109.91781 * 94.13811 * 28 15 14 52 52 H 1.09001 * 109.91225 * 215.23018 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 7 1.5427 2.1483 -1.1688 5 6 1.8869 3.4567 -1.3808 6 1 2.5412 3.9622 -0.6861 7 6 1.3939 4.1333 -2.4880 8 7 0.5961 3.5173 -3.3344 9 14 1.8627 5.9183 -2.7769 10 1 3.3371 6.0263 -2.9175 11 1 1.2104 6.4068 -4.0183 12 1 1.4139 6.7407 -1.6247 13 6 2.0670 -0.7724 -1.2271 14 6 2.3639 -2.1753 -0.6494 15 7 2.8804 -1.8858 0.7083 16 6 3.8924 -2.5108 1.3421 17 8 4.1592 -2.2226 2.4896 18 6 4.6922 -3.5677 0.6252 19 6 3.8815 -4.7962 0.3016 20 6 3.4372 -5.6191 1.3196 21 6 2.6932 -6.7456 1.0229 22 6 2.3929 -7.0490 -0.2919 23 6 2.8372 -6.2262 -1.3100 24 6 3.5817 -5.0999 -1.0132 25 6 5.4977 -3.0291 -0.5689 26 6 6.6413 -2.7617 0.4239 27 6 6.0415 -3.8787 1.2941 28 6 2.0650 -0.7694 1.2221 29 1 -0.3633 0.4794 0.9090 30 1 -0.3634 0.5475 -0.8696 31 1 -0.3634 -1.0269 -0.0392 32 1 1.7397 1.9418 0.9090 33 1 3.1517 1.4174 -0.0393 34 1 0.9554 1.6940 -1.7930 35 1 0.2519 3.9900 -4.1083 36 1 1.3105 -0.8276 -2.0099 37 1 2.9787 -0.3099 -1.6055 38 1 3.1194 -2.6847 -1.2478 39 1 1.4507 -2.7678 -0.5954 40 1 3.6715 -5.3818 2.3469 41 1 2.3502 -7.3911 1.8179 42 1 1.8119 -7.9294 -0.5238 43 1 2.6022 -6.4630 -2.3372 44 1 3.9282 -4.4566 -1.8085 45 1 5.7349 -3.7886 -1.3139 46 1 5.0778 -2.1230 -1.0057 47 1 6.5962 -1.7759 0.8865 48 1 7.6289 -2.9989 0.0284 49 1 6.0608 -3.6585 2.3615 50 1 6.4274 -4.8706 1.0585 51 1 1.2331 -1.1571 1.8099 52 1 2.6801 -0.1129 1.8375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716869041.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:01 Heat of formation + Delta-G solvation = 25.451250 kcal Electronic energy + Delta-G solvation = -31049.935069 eV Core-core repulsion = 27208.073901 eV Total energy + Delta-G solvation = -3841.861168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.74 seconds Orbital eigenvalues (eV) -41.33337 -39.34546 -38.42879 -36.99519 -34.82354 -32.72078 -31.47651 -31.19374 -30.27696 -29.38635 -27.26084 -26.14624 -25.97944 -25.03485 -23.31459 -22.52262 -22.34904 -21.92981 -20.86100 -18.95893 -18.21237 -17.62648 -17.09928 -16.50204 -16.30169 -15.69500 -15.34955 -15.05877 -14.81083 -14.50546 -14.19488 -13.99847 -13.70137 -13.65775 -13.62993 -13.25488 -13.09912 -12.68507 -12.62791 -12.51961 -12.31434 -12.16089 -12.07087 -11.84958 -11.65766 -11.36460 -11.33566 -11.08186 -11.00253 -10.80305 -10.65357 -10.59787 -10.46382 -10.29266 -10.26593 -9.95973 -9.85582 -9.64716 -9.13981 -8.87169 -8.86561 -8.60913 -6.91496 -5.77053 -3.04860 1.08022 1.17030 2.59171 2.94704 3.44175 3.48646 3.49558 3.52722 4.18288 4.35246 4.39208 4.44342 4.58704 4.60423 4.76506 4.78345 4.79209 4.88327 4.92421 5.11083 5.16262 5.31787 5.33781 5.36941 5.45586 5.45937 5.50773 5.56068 5.61666 5.72432 5.72793 5.77613 5.80148 5.86637 5.88028 5.91313 5.96832 6.04218 6.09134 6.15390 6.25218 6.25271 6.28621 6.33549 6.38656 6.42432 6.52333 6.67469 6.74843 6.79144 6.87222 7.59208 7.70267 8.16808 8.42435 9.53922 10.11240 10.46796 11.45834 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.002793 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.751086 B =10021.561310 C =10485.480849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C 0.168 3.832 4 N -0.728 5.728 5 C -0.238 4.238 6 H 0.068 0.932 7 C -0.013 4.013 8 N -0.935 5.935 9 Si 0.906 3.094 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.120 4.120 14 C 0.097 3.903 15 N -0.609 5.609 16 C 0.562 3.438 17 O -0.540 6.540 18 C -0.065 4.065 19 C -0.062 4.062 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.129 4.129 26 C -0.140 4.140 27 C -0.112 4.112 28 C 0.117 3.883 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.020 0.980 33 H 0.019 0.981 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.088 0.912 51 H 0.065 0.935 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.055 -23.170 5.312 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.080 4.080 3 C 0.040 3.960 4 N -0.373 5.373 5 C -0.369 4.369 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.158 4.158 14 C -0.026 4.026 15 N -0.341 5.341 16 C 0.350 3.650 17 O -0.418 6.418 18 C -0.068 4.068 19 C -0.062 4.062 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.135 4.135 24 C -0.130 4.130 25 C -0.166 4.166 26 C -0.178 4.178 27 C -0.149 4.149 28 C -0.006 4.006 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.103 0.897 50 H 0.107 0.893 51 H 0.084 0.916 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.335 -22.887 6.001 24.494 hybrid contribution -0.141 0.874 -0.463 0.999 sum 6.194 -22.013 5.538 23.529 Atomic orbital electron populations 1.21810 0.93304 1.00674 1.03195 1.21643 0.96404 0.96405 0.93500 1.20686 0.95671 0.88165 0.91470 1.42342 1.58259 1.10706 1.25977 1.19184 1.23654 0.87935 1.06149 0.91356 1.24700 1.00219 0.98248 0.97717 1.69637 1.37236 1.36329 1.15133 0.86282 0.77821 0.85057 0.77116 1.21334 1.21715 1.21309 1.22727 1.02602 0.93158 0.97282 1.22715 0.98990 0.98213 0.82658 1.48669 1.32785 1.34748 1.17936 1.19291 0.78827 0.81163 0.85740 1.90683 1.68518 1.65425 1.17148 1.20862 0.94169 0.92550 0.99216 1.19377 0.98269 0.94986 0.93606 1.21026 0.97764 0.94703 0.99148 1.21128 0.98562 0.97198 0.96687 1.21171 1.00131 0.99753 0.92954 1.21142 0.98102 0.94904 0.99366 1.21097 0.98717 0.97455 0.95768 1.23118 0.96093 1.01757 0.95626 1.22831 0.98156 0.99567 0.97226 1.22864 0.91889 0.99229 1.00934 1.22158 0.94259 0.87724 0.96429 0.92674 0.90810 0.93488 0.96215 0.96315 0.78067 0.93511 0.89721 0.90179 0.90102 0.91194 0.86103 0.86098 0.86159 0.85866 0.85590 0.88698 0.90249 0.89763 0.90763 0.89714 0.89325 0.91638 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.05 37.16 0.30 -1.71 16 2 C -0.08 -1.23 0.67 -153.13 -0.10 -1.33 16 3 C 0.17 3.35 4.85 -4.04 -0.02 3.33 16 4 N -0.73 -17.80 5.12 -59.91 -0.31 -18.10 16 5 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 9 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C -0.12 -1.72 5.72 -25.04 -0.14 -1.87 16 14 C 0.10 1.17 5.84 -2.31 -0.01 1.16 16 15 N -0.61 -8.50 3.29 -169.98 -0.56 -9.06 16 16 C 0.56 8.16 6.43 -10.99 -0.07 8.09 16 17 O -0.54 -9.57 16.32 5.55 0.09 -9.48 16 18 C -0.06 -0.72 0.45 -156.00 -0.07 -0.79 16 19 C -0.06 -0.64 4.25 -104.62 -0.44 -1.08 16 20 C -0.11 -1.12 9.46 -39.59 -0.37 -1.49 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 24 C -0.11 -1.01 7.63 -39.59 -0.30 -1.31 16 25 C -0.13 -1.25 5.30 -25.92 -0.14 -1.39 16 26 C -0.14 -1.40 7.81 -25.92 -0.20 -1.61 16 27 C -0.11 -1.15 6.94 -25.92 -0.18 -1.33 16 28 C 0.12 1.74 6.27 -2.98 -0.02 1.72 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.29 6.75 -51.93 -0.35 0.94 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.40 8.11 -51.93 -0.42 -0.03 16 34 H 0.38 9.70 6.18 -40.82 -0.25 9.45 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.21 7.85 -51.93 -0.41 0.80 16 37 H 0.08 1.29 7.84 -51.93 -0.41 0.88 16 38 H 0.08 0.85 3.79 -51.92 -0.20 0.65 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 0.98 5.74 -52.48 -0.30 0.68 16 45 H 0.09 0.75 6.93 -51.93 -0.36 0.39 16 46 H 0.08 0.86 7.13 -51.93 -0.37 0.49 16 47 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.08 0.99 7.34 -51.93 -0.38 0.61 16 50 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 51 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 52 H 0.08 1.25 7.64 -51.93 -0.40 0.85 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -31.82 402.26 -10.67 -42.49 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -8.44 Total: 8.74 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.22 Total: -11.01 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.14 Total: -54.11 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.82 -10.67 -42.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716869041.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.938 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.74 seconds