Wall clock time and date at job start Wed Apr 1 2020 02:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.91775 * 2 1 4 4 N 1.46500 * 109.46661 * 56.10226 * 3 2 1 5 5 C 1.36934 * 119.99880 * 180.02562 * 4 3 2 6 6 H 1.08010 * 120.00045 * 359.97438 * 5 4 3 7 7 C 1.38817 * 120.00297 * 179.97438 * 5 4 3 8 8 N 1.31623 * 119.99710 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00252 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46910 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47088 * 119.99954 * 9 7 5 12 12 H 1.48497 * 109.47274 * 240.00222 * 9 7 5 13 13 C 1.55154 * 111.01106 * 123.90583 * 2 1 3 14 14 C 1.54326 * 102.94287 * 82.56689 * 13 2 1 15 15 N 1.47029 * 107.26801 * 22.19781 * 14 13 2 16 16 C 1.34768 * 125.64485 * 181.07583 * 15 14 13 17 17 O 1.21285 * 119.99894 * 175.04916 * 16 15 14 18 18 C 1.50700 * 120.00274 * 355.05150 * 16 15 14 19 19 C 1.50700 * 112.84987 * 294.99806 * 18 16 15 20 20 C 1.38234 * 119.99933 * 114.35655 * 19 18 16 21 21 C 1.38237 * 120.00020 * 179.78894 * 20 19 18 22 22 C 1.38230 * 119.99809 * 0.46787 * 21 20 19 23 23 C 1.38233 * 120.00280 * 359.76009 * 22 21 20 24 24 C 1.38232 * 120.00021 * 0.03088 * 23 22 21 25 25 C 1.53781 * 113.61426 * 163.69325 * 18 16 15 26 26 C 1.53779 * 87.08141 * 270.88309 * 25 18 16 27 27 C 1.53776 * 113.61703 * 66.19647 * 18 16 15 28 28 C 1.47418 * 108.70246 * 1.05903 * 15 14 13 29 29 H 1.09003 * 109.47226 * 183.89996 * 1 2 3 30 30 H 1.08999 * 109.46879 * 303.89802 * 1 2 3 31 31 H 1.08996 * 109.47181 * 63.89922 * 1 2 3 32 32 H 1.08999 * 109.47117 * 176.10028 * 3 2 1 33 33 H 1.09005 * 109.47011 * 296.10513 * 3 2 1 34 34 H 0.97003 * 120.00301 * 0.02562 * 4 3 2 35 35 H 0.96994 * 119.99689 * 179.97438 * 8 7 5 36 36 H 1.09009 * 110.71299 * 324.20944 * 13 2 1 37 37 H 1.08995 * 110.87689 * 201.00708 * 13 2 1 38 38 H 1.08995 * 109.88603 * 262.78018 * 14 13 2 39 39 H 1.08997 * 110.00703 * 141.68482 * 14 13 2 40 40 H 1.08001 * 119.99966 * 359.97438 * 20 19 18 41 41 H 1.08003 * 119.99809 * 180.25003 * 21 20 19 42 42 H 1.08009 * 119.99724 * 179.78888 * 22 21 20 43 43 H 1.07998 * 120.00198 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.00658 * 179.97438 * 24 23 22 45 45 H 1.08998 * 113.61442 * 25.43366 * 25 18 16 46 46 H 1.09008 * 113.61622 * 156.33462 * 25 18 16 47 47 H 1.09003 * 113.61329 * 220.02021 * 26 25 18 48 48 H 1.08993 * 113.61676 * 89.11959 * 26 25 18 49 49 H 1.08997 * 113.61708 * 203.66952 * 27 18 16 50 50 H 1.09005 * 113.61117 * 334.48314 * 27 18 16 51 51 H 1.08997 * 110.37000 * 94.70938 * 28 15 14 52 52 H 1.09004 * 110.36330 * 217.03169 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 7 1.5310 2.1603 1.1465 5 6 1.8808 3.4678 1.3539 6 1 2.5591 3.9601 0.6726 7 6 1.3638 4.1608 2.4400 8 7 0.5376 3.5609 3.2706 9 14 1.8416 5.9443 2.7234 10 1 2.7767 6.3818 1.6559 11 1 0.6240 6.7938 2.6929 12 1 2.5036 6.0752 4.0462 13 6 2.0863 -0.8079 1.2021 14 6 2.0285 -2.2647 0.6958 15 7 2.0138 -2.2158 -0.7736 16 6 1.9459 -3.2827 -1.5942 17 8 1.8498 -3.1209 -2.7924 18 6 1.9894 -4.6766 -1.0232 19 6 3.3048 -4.9971 -0.3613 20 6 3.3566 -5.2190 1.0021 21 6 4.5625 -5.5172 1.6086 22 6 5.7181 -5.5841 0.8532 23 6 5.6672 -5.3575 -0.5095 24 6 4.4607 -5.0635 -1.1167 25 6 1.5117 -5.7596 -2.0048 26 6 0.0952 -5.5215 -1.4555 27 6 0.7648 -5.0281 -0.1621 28 6 2.0852 -0.8066 -1.2004 29 1 -0.3634 -1.0253 0.0699 30 1 -0.3633 0.5731 0.8530 31 1 -0.3633 0.4521 -0.9228 32 1 3.1637 1.4026 0.0699 33 1 1.7835 1.9301 -0.9229 34 1 0.9221 1.7182 1.7587 35 1 0.1767 4.0450 4.0297 36 1 1.4524 -0.6792 2.0796 37 1 3.1130 -0.5171 1.4238 38 1 1.1219 -2.7480 1.0598 39 1 2.9049 -2.8140 1.0397 40 1 2.4544 -5.1622 1.5931 41 1 4.6022 -5.6945 2.6733 42 1 6.6609 -5.8137 1.3276 43 1 6.5702 -5.4094 -1.0997 44 1 4.4209 -4.8861 -2.1813 45 1 1.6264 -5.4808 -3.0523 46 1 1.9042 -6.7525 -1.7846 47 1 -0.4826 -6.4367 -1.3264 48 1 -0.4541 -4.7443 -1.9867 49 1 0.9531 -5.8208 0.5620 50 1 0.2774 -4.1587 0.2793 51 1 3.1181 -0.5232 -1.4026 52 1 1.4671 -0.6460 -2.0838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716869042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:15 Heat of formation + Delta-G solvation = 24.608361 kcal Electronic energy + Delta-G solvation = -30981.754521 eV Core-core repulsion = 27139.856802 eV Total energy + Delta-G solvation = -3841.897719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.37955 -39.35776 -38.43064 -37.01122 -34.85314 -32.68534 -31.47749 -31.17668 -30.27652 -29.38165 -27.32844 -26.30294 -25.99941 -25.04702 -23.22706 -22.51434 -22.40438 -21.92857 -20.77369 -19.04707 -18.30235 -17.61062 -17.12381 -16.53402 -16.06203 -15.89189 -15.47218 -15.05271 -14.68190 -14.55228 -14.26923 -13.95812 -13.79017 -13.74942 -13.61963 -13.27582 -13.01104 -12.73510 -12.66367 -12.55855 -12.46724 -12.15534 -12.02532 -11.82982 -11.65570 -11.48294 -11.32951 -11.10359 -11.01867 -10.84849 -10.68838 -10.55494 -10.48069 -10.33085 -10.24076 -9.98169 -9.85849 -9.65833 -9.13148 -8.88891 -8.86372 -8.53560 -6.92440 -5.78157 -3.05957 1.08995 1.18169 2.56317 2.95322 3.42638 3.48878 3.50659 3.53247 4.16664 4.29584 4.35927 4.43498 4.55863 4.57830 4.75194 4.77809 4.79346 4.86171 4.91869 5.08810 5.13953 5.25576 5.31432 5.38033 5.41084 5.41967 5.49110 5.56812 5.60922 5.67612 5.73181 5.78699 5.80257 5.83513 5.86328 5.89884 5.99964 6.03720 6.08553 6.14389 6.25518 6.28331 6.29902 6.30617 6.36333 6.41032 6.50299 6.66420 6.75911 6.76697 6.84464 7.55473 7.70254 8.14302 8.41202 9.52874 10.10037 10.45267 11.44895 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.002753 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.334317 B =10169.335479 C =10945.426334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.728 5.728 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.116 4.116 14 C 0.096 3.904 15 N -0.604 5.604 16 C 0.558 3.442 17 O -0.541 6.541 18 C -0.064 4.064 19 C -0.062 4.062 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.108 4.108 25 C -0.111 4.111 26 C -0.141 4.141 27 C -0.129 4.129 28 C 0.116 3.884 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.077 0.923 51 H 0.068 0.932 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 -23.827 -5.482 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C 0.041 3.959 4 N -0.373 5.373 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.154 4.154 14 C -0.026 4.026 15 N -0.337 5.337 16 C 0.345 3.655 17 O -0.418 6.418 18 C -0.067 4.067 19 C -0.063 4.063 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.135 4.135 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.178 4.178 27 C -0.166 4.166 28 C -0.006 4.006 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.113 0.887 50 H 0.096 0.904 51 H 0.087 0.913 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.705 -23.634 -6.198 24.882 hybrid contribution 0.194 0.956 0.560 1.125 sum 4.900 -22.678 -5.638 23.876 Atomic orbital electron populations 1.21670 0.93336 1.00622 1.02996 1.21922 0.96457 0.95956 0.93451 1.20532 0.95596 0.87862 0.91880 1.42343 1.55904 1.10707 1.28338 1.19277 1.22161 0.87881 1.07509 0.91177 1.24714 1.00013 0.98312 0.97932 1.69660 1.35684 1.36172 1.16741 0.86128 0.77562 0.85028 0.77552 1.20582 1.21918 1.21914 1.22686 1.02743 0.91590 0.98411 1.22321 1.01486 0.99125 0.79703 1.48343 1.71888 1.06228 1.07205 1.19325 0.75917 0.84518 0.85714 1.90683 1.50440 1.85897 1.14793 1.20855 0.93481 0.93448 0.98947 1.19337 0.93253 1.00052 0.93611 1.21081 0.98312 0.99796 0.93802 1.21147 0.92566 0.99922 0.99939 1.21178 0.98405 1.00189 0.94137 1.21132 0.97631 0.99732 0.95023 1.21026 0.92125 0.99398 1.00096 1.22853 0.95479 0.96957 0.99615 1.22833 0.96551 1.01805 0.96613 1.23134 0.94489 1.01939 0.97082 1.22331 1.01112 0.79230 0.97969 0.93712 0.90862 0.92752 0.96070 0.96035 0.78057 0.93607 0.89499 0.90308 0.91483 0.91227 0.85622 0.85867 0.86119 0.86061 0.86139 0.89706 0.89331 0.90808 0.89843 0.88666 0.90414 0.91332 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.45 37.16 0.31 -1.73 16 2 C -0.08 -1.21 0.63 -152.36 -0.10 -1.30 16 3 C 0.17 3.31 5.25 -4.04 -0.02 3.29 16 4 N -0.73 -17.68 5.18 -59.90 -0.31 -17.99 16 5 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 9 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C -0.12 -1.67 5.69 -24.90 -0.14 -1.81 16 14 C 0.10 1.16 5.40 -3.06 -0.02 1.14 16 15 N -0.60 -8.23 3.31 -170.52 -0.56 -8.79 16 16 C 0.56 7.81 6.36 -10.99 -0.07 7.74 16 17 O -0.54 -9.28 16.17 5.55 0.09 -9.19 16 18 C -0.06 -0.69 0.51 -156.00 -0.08 -0.77 16 19 C -0.06 -0.64 4.08 -104.62 -0.43 -1.06 16 20 C -0.11 -1.01 7.34 -39.58 -0.29 -1.30 16 21 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 22 C -0.12 -1.04 10.05 -39.59 -0.40 -1.43 16 23 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 24 C -0.11 -1.14 9.47 -39.58 -0.37 -1.52 16 25 C -0.11 -1.09 6.99 -25.92 -0.18 -1.27 16 26 C -0.14 -1.27 7.80 -25.92 -0.20 -1.47 16 27 C -0.13 -1.14 5.80 -25.92 -0.15 -1.29 16 28 C 0.12 1.72 5.86 -2.53 -0.01 1.70 16 29 H 0.04 0.63 7.80 -51.93 -0.40 0.23 16 30 H 0.07 1.32 6.65 -51.93 -0.35 0.97 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.68 6.23 -40.82 -0.25 9.43 16 35 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.09 1.29 8.05 -51.92 -0.42 0.87 16 37 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 38 H 0.07 0.72 6.09 -51.93 -0.32 0.41 16 39 H 0.07 0.80 5.86 -51.93 -0.30 0.49 16 40 H 0.13 0.95 6.40 -52.49 -0.34 0.61 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 45 H 0.08 0.96 7.34 -51.93 -0.38 0.58 16 46 H 0.09 0.74 8.10 -51.92 -0.42 0.32 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.09 0.68 6.78 -51.93 -0.35 0.33 16 50 H 0.08 0.72 6.05 -51.93 -0.31 0.41 16 51 H 0.07 1.01 8.04 -51.93 -0.42 0.60 16 52 H 0.08 1.21 7.90 -51.93 -0.41 0.80 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -31.56 402.13 -10.65 -42.21 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -8.44 Total: 8.48 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -3.19 Total: -11.09 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.15 Total: -53.66 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.56 -10.65 -42.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716869042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.816 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds