Wall clock time and date at job start Wed Apr 1 2020 02:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.91775 * 2 1 4 4 N 1.46500 * 109.46661 * 56.10226 * 3 2 1 5 5 C 1.36934 * 119.99880 * 180.02562 * 4 3 2 6 6 H 1.08010 * 120.00045 * 359.97438 * 5 4 3 7 7 C 1.38817 * 120.00297 * 179.97438 * 5 4 3 8 8 N 1.31623 * 119.99710 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00252 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46910 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47088 * 119.99954 * 9 7 5 12 12 H 1.48497 * 109.47274 * 240.00222 * 9 7 5 13 13 C 1.55154 * 111.01106 * 123.90583 * 2 1 3 14 14 C 1.54326 * 102.94287 * 82.56689 * 13 2 1 15 15 N 1.47029 * 107.26801 * 22.19781 * 14 13 2 16 16 C 1.34768 * 125.64485 * 181.07583 * 15 14 13 17 17 O 1.21285 * 119.99894 * 175.04916 * 16 15 14 18 18 C 1.50700 * 120.00274 * 355.05150 * 16 15 14 19 19 C 1.50700 * 112.84987 * 294.99806 * 18 16 15 20 20 C 1.38234 * 119.99933 * 114.35655 * 19 18 16 21 21 C 1.38237 * 120.00020 * 179.78894 * 20 19 18 22 22 C 1.38230 * 119.99809 * 0.46787 * 21 20 19 23 23 C 1.38233 * 120.00280 * 359.76009 * 22 21 20 24 24 C 1.38232 * 120.00021 * 0.03088 * 23 22 21 25 25 C 1.53781 * 113.61426 * 163.69325 * 18 16 15 26 26 C 1.53779 * 87.08141 * 270.88309 * 25 18 16 27 27 C 1.53776 * 113.61703 * 66.19647 * 18 16 15 28 28 C 1.47418 * 108.70246 * 1.05903 * 15 14 13 29 29 H 1.09003 * 109.47226 * 183.89996 * 1 2 3 30 30 H 1.08999 * 109.46879 * 303.89802 * 1 2 3 31 31 H 1.08996 * 109.47181 * 63.89922 * 1 2 3 32 32 H 1.08999 * 109.47117 * 176.10028 * 3 2 1 33 33 H 1.09005 * 109.47011 * 296.10513 * 3 2 1 34 34 H 0.97003 * 120.00301 * 0.02562 * 4 3 2 35 35 H 0.96994 * 119.99689 * 179.97438 * 8 7 5 36 36 H 1.09009 * 110.71299 * 324.20944 * 13 2 1 37 37 H 1.08995 * 110.87689 * 201.00708 * 13 2 1 38 38 H 1.08995 * 109.88603 * 262.78018 * 14 13 2 39 39 H 1.08997 * 110.00703 * 141.68482 * 14 13 2 40 40 H 1.08001 * 119.99966 * 359.97438 * 20 19 18 41 41 H 1.08003 * 119.99809 * 180.25003 * 21 20 19 42 42 H 1.08009 * 119.99724 * 179.78888 * 22 21 20 43 43 H 1.07998 * 120.00198 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.00658 * 179.97438 * 24 23 22 45 45 H 1.08998 * 113.61442 * 25.43366 * 25 18 16 46 46 H 1.09008 * 113.61622 * 156.33462 * 25 18 16 47 47 H 1.09003 * 113.61329 * 220.02021 * 26 25 18 48 48 H 1.08993 * 113.61676 * 89.11959 * 26 25 18 49 49 H 1.08997 * 113.61708 * 203.66952 * 27 18 16 50 50 H 1.09005 * 113.61117 * 334.48314 * 27 18 16 51 51 H 1.08997 * 110.37000 * 94.70938 * 28 15 14 52 52 H 1.09004 * 110.36330 * 217.03169 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 7 1.5310 2.1603 1.1465 5 6 1.8808 3.4678 1.3539 6 1 2.5591 3.9601 0.6726 7 6 1.3638 4.1608 2.4400 8 7 0.5376 3.5609 3.2706 9 14 1.8416 5.9443 2.7234 10 1 2.7767 6.3818 1.6559 11 1 0.6240 6.7938 2.6929 12 1 2.5036 6.0752 4.0462 13 6 2.0863 -0.8079 1.2021 14 6 2.0285 -2.2647 0.6958 15 7 2.0138 -2.2158 -0.7736 16 6 1.9459 -3.2827 -1.5942 17 8 1.8498 -3.1209 -2.7924 18 6 1.9894 -4.6766 -1.0232 19 6 3.3048 -4.9971 -0.3613 20 6 3.3566 -5.2190 1.0021 21 6 4.5625 -5.5172 1.6086 22 6 5.7181 -5.5841 0.8532 23 6 5.6672 -5.3575 -0.5095 24 6 4.4607 -5.0635 -1.1167 25 6 1.5117 -5.7596 -2.0048 26 6 0.0952 -5.5215 -1.4555 27 6 0.7648 -5.0281 -0.1621 28 6 2.0852 -0.8066 -1.2004 29 1 -0.3634 -1.0253 0.0699 30 1 -0.3633 0.5731 0.8530 31 1 -0.3633 0.4521 -0.9228 32 1 3.1637 1.4026 0.0699 33 1 1.7835 1.9301 -0.9229 34 1 0.9221 1.7182 1.7587 35 1 0.1767 4.0450 4.0297 36 1 1.4524 -0.6792 2.0796 37 1 3.1130 -0.5171 1.4238 38 1 1.1219 -2.7480 1.0598 39 1 2.9049 -2.8140 1.0397 40 1 2.4544 -5.1622 1.5931 41 1 4.6022 -5.6945 2.6733 42 1 6.6609 -5.8137 1.3276 43 1 6.5702 -5.4094 -1.0997 44 1 4.4209 -4.8861 -2.1813 45 1 1.6264 -5.4808 -3.0523 46 1 1.9042 -6.7525 -1.7846 47 1 -0.4826 -6.4367 -1.3264 48 1 -0.4541 -4.7443 -1.9867 49 1 0.9531 -5.8208 0.5620 50 1 0.2774 -4.1587 0.2793 51 1 3.1181 -0.5232 -1.4026 52 1 1.4671 -0.6460 -2.0838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716869042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:09 Heat of formation + Delta-G solvation = 8.364426 kcal Electronic energy + Delta-G solvation = -30982.458911 eV Core-core repulsion = 27139.856802 eV Total energy + Delta-G solvation = -3842.602109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -42.30150 -40.39787 -39.36179 -38.00613 -36.52069 -34.33319 -32.34655 -31.92237 -31.84534 -30.60250 -28.47124 -27.61178 -26.91654 -26.32382 -24.55502 -23.98882 -23.20256 -22.65907 -21.71213 -20.33639 -19.43224 -19.09120 -18.33075 -17.51941 -17.20746 -16.82326 -16.55423 -16.23139 -15.79938 -15.65755 -15.44060 -15.27021 -15.19693 -14.87019 -14.67125 -14.33148 -14.17770 -14.04176 -13.93742 -13.53288 -13.42322 -13.25550 -13.02653 -12.91869 -12.89187 -12.86751 -12.65732 -12.49107 -12.11259 -12.07681 -12.00932 -11.91548 -11.66044 -11.54309 -11.47633 -11.37182 -11.23591 -10.93598 -10.91880 -9.84036 -9.67448 -9.56471 -8.96184 -7.93334 -5.20553 0.39323 0.50346 1.48593 1.49205 1.49837 1.58855 1.88111 2.57287 2.83353 3.27218 3.40695 3.41986 3.56380 3.57232 3.62877 3.73674 3.82972 3.84685 4.13127 4.16213 4.18321 4.20800 4.30876 4.31627 4.33854 4.39850 4.55939 4.63563 4.65290 4.71736 4.74379 4.76364 4.80539 4.84586 4.95782 5.00425 5.02374 5.05446 5.06609 5.06930 5.12972 5.15485 5.16248 5.26743 5.30198 5.40179 5.43146 5.52167 5.59275 5.64567 5.66322 6.10504 6.29453 6.46740 7.04423 7.37185 8.11574 8.37616 9.30119 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.002753 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.334317 B =10169.335479 C =10945.426334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.069 4.069 3 C 0.170 3.830 4 N -0.735 5.735 5 C -0.243 4.243 6 H 0.071 0.929 7 C -0.071 4.071 8 N -0.965 5.965 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.295 1.295 12 H -0.292 1.292 13 C -0.113 4.113 14 C 0.105 3.895 15 N -0.604 5.604 16 C 0.553 3.447 17 O -0.580 6.580 18 C -0.064 4.064 19 C -0.071 4.071 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.111 4.111 26 C -0.139 4.139 27 C -0.119 4.119 28 C 0.121 3.879 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.022 0.978 33 H 0.016 0.984 34 H 0.379 0.621 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.133 0.867 44 H 0.105 0.895 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.063 0.937 49 H 0.121 0.879 50 H 0.076 0.924 51 H 0.067 0.933 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.253 -25.487 -4.166 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.070 4.070 3 C 0.042 3.958 4 N -0.379 5.379 5 C -0.375 4.375 6 H 0.089 0.911 7 C -0.263 4.263 8 N -0.616 5.616 9 Si 0.798 3.202 10 H -0.194 1.194 11 H -0.222 1.222 12 H -0.220 1.220 13 C -0.150 4.150 14 C -0.017 4.017 15 N -0.336 5.336 16 C 0.343 3.657 17 O -0.461 6.461 18 C -0.067 4.067 19 C -0.072 4.072 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.148 4.148 26 C -0.176 4.176 27 C -0.156 4.156 28 C -0.002 4.002 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.213 0.787 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.124 0.876 47 H 0.114 0.886 48 H 0.081 0.919 49 H 0.139 0.861 50 H 0.094 0.906 51 H 0.086 0.914 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.298 -25.308 -4.896 26.316 hybrid contribution 0.085 1.452 0.072 1.456 sum 5.383 -23.856 -4.824 24.927 Atomic orbital electron populations 1.21568 0.93212 1.01357 1.01649 1.21732 0.96359 0.93976 0.94908 1.20611 0.95479 0.89732 0.89935 1.42460 1.55867 1.10179 1.29382 1.19627 1.21484 0.89218 1.07194 0.91058 1.25459 1.00603 1.02127 0.98126 1.69795 1.37012 1.37521 1.17248 0.85141 0.77120 0.80478 0.77419 1.19424 1.22196 1.21952 1.22619 1.02005 0.92842 0.97580 1.22342 1.03201 0.97642 0.78467 1.48389 1.71650 1.05570 1.07956 1.19981 0.74746 0.85721 0.85249 1.90660 1.52172 1.86619 1.16603 1.20809 0.94890 0.91199 0.99814 1.19332 0.92606 1.00967 0.94281 1.21297 0.99389 0.99275 0.93168 1.21484 0.92204 0.98935 1.01130 1.21490 0.99569 0.99413 0.93804 1.21336 0.97614 0.99616 0.95800 1.21066 0.93177 1.00741 0.99663 1.22881 0.96256 0.97512 0.98189 1.22801 0.96132 1.02208 0.96479 1.23184 0.92788 1.02555 0.97094 1.22145 1.00746 0.80216 0.97080 0.91724 0.93120 0.93239 0.95972 0.96580 0.78732 0.94007 0.89854 0.91046 0.89335 0.89920 0.83775 0.83612 0.84121 0.84953 0.87665 0.92030 0.87552 0.88580 0.91859 0.86056 0.90570 0.91446 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 8.45 71.98 0.61 -3.18 16 2 C -0.07 -2.14 0.63 -50.79 -0.03 -2.18 16 3 C 0.17 6.67 5.25 86.38 0.45 7.13 16 4 N -0.74 -36.03 5.18 -343.43 -1.78 -37.81 16 5 C -0.24 -13.39 9.99 84.04 0.84 -12.55 16 6 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 7 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 8 N -0.96 -57.50 13.06 21.65 0.28 -57.22 16 9 Si 0.97 45.73 29.55 68.60 2.03 47.75 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 C -0.11 -3.10 5.69 31.78 0.18 -2.92 16 14 C 0.11 2.32 5.40 86.73 0.47 2.79 16 15 N -0.60 -15.93 3.31 -811.80 -2.69 -18.62 16 16 C 0.55 15.34 6.36 87.66 0.56 15.90 16 17 O -0.58 -20.49 16.17 -3.05 -0.05 -20.54 16 18 C -0.06 -1.28 0.51 -53.15 -0.03 -1.31 16 19 C -0.07 -1.34 4.08 -19.86 -0.08 -1.42 16 20 C -0.11 -1.68 7.34 22.27 0.16 -1.52 16 21 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 22 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 23 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 24 C -0.13 -2.63 9.47 22.27 0.21 -2.41 16 25 C -0.11 -2.07 6.99 31.12 0.22 -1.85 16 26 C -0.14 -2.27 7.80 31.12 0.24 -2.03 16 27 C -0.12 -1.76 5.80 31.12 0.18 -1.58 16 28 C 0.12 3.58 5.86 86.86 0.51 4.09 16 29 H 0.06 1.75 7.80 -2.39 -0.02 1.73 16 30 H 0.05 1.83 6.65 -2.39 -0.02 1.82 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.02 0.88 8.08 -2.39 -0.02 0.86 16 33 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.38 19.35 6.23 -92.71 -0.58 18.77 16 35 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.08 2.39 8.05 -2.38 -0.02 2.37 16 37 H 0.07 2.08 8.00 -2.39 -0.02 2.06 16 38 H 0.09 1.62 6.09 -2.39 -0.01 1.61 16 39 H 0.08 1.67 5.86 -2.39 -0.01 1.65 16 40 H 0.14 1.55 6.40 -2.91 -0.02 1.53 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 43 H 0.13 1.84 8.06 -2.91 -0.02 1.81 16 44 H 0.11 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.06 1.44 7.34 -2.39 -0.02 1.42 16 46 H 0.11 1.58 8.10 -2.38 -0.02 1.56 16 47 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.12 1.20 6.78 -2.39 -0.02 1.18 16 50 H 0.08 1.17 6.05 -2.38 -0.01 1.16 16 51 H 0.07 2.00 8.04 -2.39 -0.02 1.98 16 52 H 0.07 2.17 7.90 -2.38 -0.02 2.15 16 Total: -1.00 -68.47 402.13 3.76 -64.71 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.33 Total: 33.20 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 5.63 Total: -11.48 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -4.18 Total: -113.64 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -68.47 3.76 -64.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716869042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.073 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds