Wall clock time and date at job start Wed Apr 1 2020 01:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 119.99596 * 2 1 4 4 C 1.38210 * 119.99632 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.00195 * 0.02562 * 4 3 2 6 6 C 1.38209 * 119.99796 * 359.95360 * 5 4 3 7 7 C 1.38213 * 120.00055 * 179.72906 * 2 1 3 8 8 C 1.50693 * 119.99848 * 359.97438 * 7 2 1 9 9 C 1.52994 * 109.47246 * 274.75703 * 8 7 2 10 10 H 1.09003 * 109.46900 * 56.46196 * 9 8 7 11 11 C 1.52991 * 109.47520 * 296.46012 * 9 8 7 12 12 C 1.50709 * 109.47137 * 176.45761 * 9 8 7 13 13 O 1.21282 * 119.99645 * 0.02562 * 12 9 8 14 14 N 1.34777 * 119.99942 * 180.02562 * 12 9 8 15 15 C 1.46499 * 119.99956 * 180.02562 * 14 12 9 16 16 C 1.50690 * 109.47349 * 179.97438 * 15 14 12 17 17 C 1.29456 * 117.69392 * 94.99699 * 16 15 14 18 18 C 1.50324 * 123.64961 * 180.85838 * 17 16 15 19 19 N 1.47006 * 109.16917 * 349.02505 * 18 17 16 20 20 C 1.36933 * 121.37468 * 222.96920 * 19 18 17 21 21 H 1.08005 * 120.00101 * 153.27343 * 20 19 18 22 22 C 1.38818 * 120.00301 * 333.26843 * 20 19 18 23 23 N 1.31616 * 119.99556 * 347.25711 * 22 20 19 24 24 Si 1.86794 * 120.00300 * 167.25206 * 22 20 19 25 25 H 1.48506 * 109.46973 * 60.00351 * 24 22 20 26 26 H 1.48497 * 109.47441 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47185 * 300.00543 * 24 22 20 28 28 C 1.47338 * 117.24723 * 42.94423 * 19 18 17 29 29 C 1.49971 * 117.69759 * 274.73750 * 16 15 14 30 30 H 1.08998 * 109.47272 * 89.53386 * 1 2 3 31 31 H 1.09006 * 109.47300 * 329.53100 * 1 2 3 32 32 H 1.09003 * 109.46916 * 209.53374 * 1 2 3 33 33 H 1.07998 * 120.00112 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.00315 * 179.97438 * 4 3 2 35 35 H 1.08000 * 119.99977 * 179.97438 * 5 4 3 36 36 H 1.08001 * 119.99705 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.47207 * 34.76493 * 8 7 2 38 38 H 1.09007 * 109.46673 * 154.75796 * 8 7 2 39 39 H 1.08999 * 109.47438 * 59.35472 * 11 9 8 40 40 H 1.09002 * 109.47580 * 179.35666 * 11 9 8 41 41 H 1.09008 * 109.47568 * 299.35392 * 11 9 8 42 42 H 0.96997 * 120.00122 * 359.97438 * 14 12 9 43 43 H 1.09006 * 109.46885 * 300.00364 * 15 14 12 44 44 H 1.09001 * 109.46833 * 59.99370 * 15 14 12 45 45 H 1.07996 * 118.17502 * 0.88106 * 17 16 15 46 46 H 1.09005 * 109.52154 * 108.93553 * 18 17 16 47 47 H 1.09007 * 109.52137 * 229.11492 * 18 17 16 48 48 H 0.97006 * 119.99804 * 179.97438 * 23 22 20 49 49 H 1.09007 * 109.77779 * 57.81530 * 28 19 18 50 50 H 1.08999 * 109.77906 * 178.61593 * 28 19 18 51 51 H 1.08995 * 109.31468 * 281.29164 * 29 16 15 52 52 H 1.09006 * 109.30902 * 40.71944 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0001 0.0005 6 6 3.5806 -1.1969 0.0010 7 6 2.1980 -1.1969 0.0057 8 6 1.4446 -2.5020 0.0124 9 6 1.0865 -2.8767 1.4519 10 1 0.5163 -2.0668 1.9070 11 6 2.3693 -3.1099 2.2524 12 6 0.2584 -4.1359 1.4520 13 8 -0.0177 -4.6801 0.4040 14 7 -0.1753 -4.6571 2.6168 15 6 -0.9798 -5.8814 2.6170 16 6 -1.3326 -6.2504 4.0348 17 6 -2.4757 -5.8519 4.4936 18 6 -2.9541 -6.1279 5.8917 19 7 -2.0623 -7.1122 6.5216 20 6 -2.5574 -8.1478 7.2682 21 1 -1.9951 -9.0655 7.3588 22 6 -3.7822 -8.0183 7.9087 23 7 -4.3487 -6.8348 8.0121 24 14 -4.6261 -9.5235 8.6237 25 1 -3.7486 -10.1425 9.6495 26 1 -5.9112 -9.1202 9.2492 27 1 -4.8897 -10.5046 7.5406 28 6 -0.6137 -6.9388 6.3159 29 6 -0.3374 -7.0586 4.8129 30 1 -0.3634 0.0084 -1.0276 31 1 -0.3634 0.8858 0.5211 32 1 -0.3633 -0.8942 0.5066 33 1 1.6581 2.1327 0.0004 34 1 4.1203 2.1327 0.0001 35 1 5.3516 0.0001 0.0005 36 1 4.1207 -2.1322 0.0014 37 1 0.5316 -2.3974 -0.5737 38 1 2.0678 -3.2835 -0.4222 39 1 2.9736 -2.2028 2.2427 40 1 2.1144 -3.3657 3.2809 41 1 2.9339 -3.9274 1.8040 42 1 0.0459 -4.2220 3.4551 43 1 -1.8935 -5.7158 2.0461 44 1 -0.4091 -6.6911 2.1623 45 1 -3.1216 -5.2902 3.8351 46 1 -2.9428 -5.2038 6.4696 47 1 -3.9688 -6.5249 5.8577 48 1 -5.2047 -6.7443 8.4594 49 1 -0.3052 -5.9567 6.6744 50 1 -0.0693 -7.7157 6.8527 51 1 -0.4076 -8.1039 4.5119 52 1 0.6675 -6.6925 4.6026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718035925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:32 Heat of formation + Delta-G solvation = 5.176497 kcal Electronic energy + Delta-G solvation = -29170.691072 eV Core-core repulsion = 25327.950724 eV Total energy + Delta-G solvation = -3842.740348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.41475 -39.44743 -37.80503 -35.29963 -34.89004 -33.09210 -32.81599 -31.28569 -30.65172 -29.73243 -27.59375 -26.94273 -26.74793 -24.54904 -23.25517 -22.70991 -22.22760 -21.14688 -20.81407 -19.86035 -17.77104 -17.37614 -16.55167 -16.12417 -15.97796 -15.68314 -15.37235 -15.10226 -14.96237 -14.42402 -14.13134 -13.98446 -13.76052 -13.53949 -13.46083 -13.38508 -13.19364 -12.92353 -12.75515 -12.47741 -12.38897 -12.26916 -12.17733 -12.03756 -11.59942 -11.52025 -11.42046 -11.29715 -11.10962 -11.03819 -10.91104 -10.76612 -10.42375 -10.35659 -9.87445 -9.81367 -9.60556 -9.05027 -8.95815 -8.81690 -8.70285 -8.08787 -6.74017 -5.82764 -3.24697 1.07207 1.11846 2.57831 2.65883 3.36850 3.41143 3.42361 3.43568 3.58994 4.45412 4.46559 4.51244 4.62844 4.66814 4.70229 4.80756 4.87940 5.05153 5.10141 5.16989 5.23067 5.33239 5.36140 5.37962 5.38476 5.50285 5.53014 5.56517 5.59428 5.60065 5.77401 5.81377 5.86541 5.92307 5.95245 6.01323 6.05071 6.14254 6.23140 6.24605 6.30295 6.42764 6.44588 6.52966 6.71045 6.75512 6.84269 7.13739 7.22313 7.29888 7.58941 7.70392 7.79107 8.25409 8.36725 9.16851 9.78633 10.37958 11.27607 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.001842 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.569125 B =15199.216724 C =15327.326604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.078 4.078 8 C -0.062 4.062 9 C -0.105 4.105 10 H 0.097 0.903 11 C -0.146 4.146 12 C 0.513 3.487 13 O -0.547 6.547 14 N -0.719 5.719 15 C 0.157 3.843 16 C -0.166 4.166 17 C -0.125 4.125 18 C 0.195 3.805 19 N -0.594 5.594 20 C -0.248 4.248 21 H 0.067 0.933 22 C 0.001 3.999 23 N -0.910 5.910 24 Si 0.906 3.094 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.144 3.856 29 C -0.090 4.090 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.401 0.599 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.042 0.958 47 H 0.091 0.909 48 H 0.255 0.745 49 H 0.023 0.977 50 H 0.057 0.943 51 H 0.064 0.936 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.699 15.371 -15.421 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.078 4.078 8 C -0.100 4.100 9 C -0.126 4.126 10 H 0.116 0.884 11 C -0.203 4.203 12 C 0.299 3.701 13 O -0.425 6.425 14 N -0.370 5.370 15 C 0.034 3.966 16 C -0.167 4.167 17 C -0.145 4.145 18 C 0.070 3.930 19 N -0.318 5.318 20 C -0.377 4.377 21 H 0.085 0.915 22 C -0.197 4.197 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.017 3.983 29 C -0.129 4.129 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.236 0.764 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.060 0.940 47 H 0.109 0.891 48 H 0.065 0.935 49 H 0.041 0.959 50 H 0.075 0.925 51 H 0.082 0.918 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.313 14.974 -16.068 26.215 hybrid contribution -0.406 -0.439 0.750 0.959 sum 13.907 14.535 -15.318 25.284 Atomic orbital electron populations 1.20900 0.91248 1.03073 1.02593 1.19814 0.96066 0.92608 0.99599 1.21027 0.94285 0.97425 1.01070 1.21113 0.94313 0.98022 1.00577 1.21119 0.99788 0.92553 1.00944 1.21076 0.93566 0.98156 1.00076 1.19746 0.93649 0.94424 0.99986 1.20404 1.00778 0.93710 0.95115 1.21284 0.97378 0.96022 0.97959 0.88450 1.21839 0.96078 1.02793 0.99629 1.20614 0.79788 0.85898 0.83763 1.90689 1.57985 1.62335 1.31450 1.46215 1.54052 1.27962 1.08762 1.20451 0.94766 0.85839 0.95517 1.20500 0.97972 1.03788 0.94447 1.23294 0.95389 0.96034 0.99827 1.19741 0.95487 0.92667 0.85097 1.44082 0.99169 1.30635 1.57888 1.19119 1.03481 0.92132 1.23017 0.91537 1.25069 0.99822 0.96477 0.98381 1.69974 1.18305 1.20941 1.46271 0.86306 0.78815 0.82361 0.78896 1.20881 1.21601 1.21025 1.20996 0.86909 0.98387 0.91980 1.20784 0.95583 0.98662 0.97843 0.91018 0.91479 0.91061 0.86213 0.86306 0.86243 0.86046 0.89907 0.90292 0.91139 0.91903 0.92034 0.76420 0.91745 0.91688 0.88835 0.94048 0.89124 0.93516 0.95892 0.92472 0.91762 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.24 36.00 0.33 -0.58 16 2 C -0.08 -0.70 5.88 -104.62 -0.62 -1.31 16 3 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 4 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 5 C -0.13 -0.96 10.05 -39.58 -0.40 -1.35 16 6 C -0.11 -0.91 8.31 -39.59 -0.33 -1.24 16 7 C -0.08 -0.69 4.52 -104.63 -0.47 -1.17 16 8 C -0.06 -0.60 3.46 -27.89 -0.10 -0.70 16 9 C -0.11 -1.00 2.50 -91.77 -0.23 -1.22 16 10 H 0.10 0.84 7.03 -51.93 -0.37 0.47 16 11 C -0.15 -1.20 8.71 37.15 0.32 -0.87 16 12 C 0.51 6.56 7.15 -10.98 -0.08 6.48 16 13 O -0.55 -8.96 15.95 5.56 0.09 -8.87 16 14 N -0.72 -9.00 5.44 -61.47 -0.33 -9.34 16 15 C 0.16 2.31 5.66 -5.20 -0.03 2.28 16 16 C -0.17 -2.78 5.22 -101.00 -0.53 -3.31 16 17 C -0.12 -2.32 9.47 -35.78 -0.34 -2.65 16 18 C 0.19 4.52 5.19 -5.10 -0.03 4.49 16 19 N -0.59 -14.58 3.00 -173.56 -0.52 -15.10 16 20 C -0.25 -6.70 9.69 -15.06 -0.15 -6.85 16 21 H 0.07 1.76 7.86 -52.48 -0.41 1.35 16 22 C 0.00 0.02 5.05 -17.43 -0.09 -0.07 16 23 N -0.91 -25.86 11.11 55.49 0.62 -25.25 16 24 Si 0.91 21.52 29.57 -169.99 -5.03 16.49 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.14 2.90 6.59 -3.44 -0.02 2.87 16 29 C -0.09 -1.52 5.95 -28.09 -0.17 -1.69 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.07 0.57 5.47 -51.93 -0.28 0.28 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.08 0.86 6.82 -51.93 -0.35 0.51 16 38 H 0.08 0.80 8.05 -51.92 -0.42 0.38 16 39 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 40 H 0.06 0.49 7.58 -51.93 -0.39 0.09 16 41 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.40 4.43 7.89 -40.82 -0.32 4.10 16 43 H 0.06 0.99 7.78 -51.93 -0.40 0.59 16 44 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 45 H 0.09 1.57 7.73 -52.49 -0.41 1.16 16 46 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.09 2.35 6.53 -51.93 -0.34 2.01 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 51 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 52 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 411.54 15.07 6.20 6.20 Total: -1.00 -30.88 411.54 -11.32 -42.20 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.65 Total: 3.23 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.69 Total: -9.56 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.24 Total: -49.68 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.88 -11.32 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718035925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.372 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds