Wall clock time and date at job start Wed Apr 1 2020 02:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 119.99821 * 2 1 4 4 C 1.38221 * 120.00216 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99832 * 359.95383 * 4 3 2 6 6 C 1.38217 * 120.00071 * 359.85620 * 5 4 3 7 7 C 1.38204 * 120.00467 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.00166 * 359.97438 * 7 2 1 9 9 H 1.09005 * 115.54604 * 334.33466 * 8 7 2 10 10 C 1.52999 * 117.50219 * 188.62149 * 8 7 2 11 11 C 1.52998 * 117.50106 * 119.99611 * 8 7 2 12 12 H 1.09003 * 117.49939 * 359.97438 * 11 8 7 13 13 C 1.50694 * 117.50267 * 214.98391 * 11 8 7 14 14 O 1.21284 * 119.99898 * 359.97438 * 13 11 8 15 15 N 1.34773 * 120.00278 * 180.02562 * 13 11 8 16 16 C 1.48127 * 127.03471 * 0.04136 * 15 13 11 17 17 C 1.54939 * 103.25486 * 140.67150 * 16 15 13 18 18 C 1.54620 * 102.83830 * 37.38260 * 17 16 15 19 19 C 1.52996 * 110.41723 * 97.08646 * 18 17 16 20 20 C 1.53005 * 110.32187 * 219.25911 * 18 17 16 21 21 N 1.46505 * 109.46904 * 295.61627 * 20 18 17 22 22 C 1.36931 * 119.99788 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 20 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48508 * 109.46872 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 119.99997 * 26 24 22 29 29 H 1.48498 * 109.47018 * 240.00044 * 26 24 22 30 30 C 1.47487 * 127.03945 * 179.97438 * 15 13 11 31 31 H 1.09000 * 109.46741 * 269.97310 * 1 2 3 32 32 H 1.08993 * 109.47451 * 29.97673 * 1 2 3 33 33 H 1.08994 * 109.46985 * 149.98354 * 1 2 3 34 34 H 1.08002 * 119.99931 * 359.97438 * 3 2 1 35 35 H 1.07998 * 119.99715 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.99950 * 180.02562 * 5 4 3 37 37 H 1.07992 * 119.99914 * 180.20499 * 6 5 4 38 38 H 1.09002 * 117.49851 * 145.02083 * 10 8 7 39 39 H 1.08997 * 117.49617 * 0.02562 * 10 8 7 40 40 H 1.08998 * 110.66183 * 259.11855 * 16 15 13 41 41 H 1.08997 * 110.65749 * 22.06417 * 16 15 13 42 42 H 1.08998 * 110.74329 * 279.04123 * 17 16 15 43 43 H 1.09005 * 110.73440 * 155.71611 * 17 16 15 44 44 H 1.08997 * 109.46892 * 182.89271 * 19 18 17 45 45 H 1.09005 * 109.46528 * 302.89336 * 19 18 17 46 46 H 1.08993 * 109.47136 * 62.88685 * 19 18 17 47 47 H 1.09003 * 109.46946 * 175.62386 * 20 18 17 48 48 H 1.08993 * 109.47679 * 55.61929 * 20 18 17 49 49 H 0.97000 * 119.99792 * 0.02562 * 21 20 18 50 50 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 51 51 H 1.09004 * 109.91141 * 86.11693 * 30 15 13 52 52 H 1.09001 * 110.06819 * 324.93602 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0001 6 6 3.5807 -1.1968 0.0039 7 6 2.1981 -1.1968 -0.0005 8 6 1.4447 -2.5020 -0.0005 9 1 0.4422 -2.4661 0.4258 10 6 2.2537 -3.7847 0.2023 11 6 1.6787 -3.4528 -1.1762 12 1 2.3772 -3.1341 -1.9499 13 6 0.5058 -4.2684 -1.6557 14 8 -0.5729 -4.1570 -1.1124 15 7 0.6555 -5.1224 -2.6875 16 6 1.8935 -5.3819 -3.4583 17 6 1.8514 -6.9128 -3.6932 18 6 0.3473 -7.1829 -3.9287 19 6 0.0433 -7.2392 -5.4271 20 6 -0.0699 -8.4909 -3.2532 21 7 0.6316 -9.6117 -3.8842 22 6 0.4154 -10.8900 -3.4435 23 1 -0.2726 -11.0721 -2.6311 24 6 1.0757 -11.9525 -4.0452 25 7 1.9136 -11.7307 -5.0356 26 14 0.7749 -13.6972 -3.4492 27 1 -0.2036 -13.6768 -2.3321 28 1 0.2361 -14.5155 -4.5650 29 1 2.0534 -14.2859 -2.9760 30 6 -0.3793 -5.9907 -3.2794 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8901 -0.5134 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6582 2.1327 -0.0004 35 1 4.1203 2.1328 -0.0010 36 1 5.3518 0.0003 -0.0001 37 1 4.1207 -2.1320 0.0075 38 1 1.7835 -4.5930 0.7624 39 1 3.3308 -3.6845 0.3362 40 1 1.8750 -4.8464 -4.4075 41 1 2.7732 -5.1034 -2.8781 42 1 2.2065 -7.4484 -2.8129 43 1 2.4347 -7.1844 -4.5731 44 1 -1.0275 -7.3788 -5.5756 45 1 0.3568 -6.3067 -5.8966 46 1 0.5841 -8.0720 -5.8765 47 1 -1.1457 -8.6286 -3.3612 48 1 0.1869 -8.4512 -2.1947 49 1 1.2492 -9.4482 -4.6141 50 1 2.3753 -12.4732 -5.4558 51 1 -0.9378 -5.4397 -4.0362 52 1 -1.0573 -6.3467 -2.5038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724254514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:58 Heat of formation + Delta-G solvation = 21.630116 kcal Electronic energy + Delta-G solvation = -29429.759726 eV Core-core repulsion = 25587.732861 eV Total energy + Delta-G solvation = -3842.026865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.64720 -39.76865 -38.31869 -36.35868 -34.81562 -33.12761 -32.69424 -30.90014 -30.27051 -29.38631 -27.27762 -26.87455 -25.79082 -24.30705 -23.86465 -22.78480 -22.29544 -21.69906 -20.46447 -19.14858 -18.63315 -17.60630 -17.11799 -16.53933 -16.17260 -15.80909 -15.27866 -15.13004 -14.72313 -14.49918 -14.11800 -14.06425 -13.88639 -13.67432 -13.40761 -13.31929 -13.16735 -12.61467 -12.54877 -12.52185 -12.42958 -12.34918 -12.16126 -12.06069 -11.71397 -11.45603 -11.38117 -11.19188 -11.02554 -10.92187 -10.83790 -10.67985 -10.59981 -10.31723 -10.22849 -9.93279 -9.83894 -9.65767 -9.05937 -8.88530 -8.74985 -8.64133 -6.91938 -5.77875 -3.05489 0.99285 1.09262 2.45401 2.89312 3.35506 3.42760 3.49089 3.50889 3.81090 4.17782 4.43075 4.52709 4.55118 4.59718 4.63824 4.71610 4.74761 4.77226 4.92191 4.96681 5.04318 5.09914 5.25715 5.31546 5.35174 5.40726 5.42383 5.43106 5.50867 5.59130 5.60541 5.65443 5.74881 5.78325 5.81968 5.88427 5.93007 5.94664 6.04317 6.08239 6.21574 6.22756 6.24183 6.33868 6.39484 6.41583 6.51649 6.66667 6.71369 6.78233 6.86580 7.56848 7.70873 8.16085 8.41592 9.53297 10.10587 10.46110 11.45156 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021416 B = 0.001988 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.120270 B =14080.537171 C =14341.346458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.086 4.086 9 H 0.129 0.871 10 C -0.143 4.143 11 C -0.171 4.171 12 H 0.123 0.877 13 C 0.561 3.439 14 O -0.545 6.545 15 N -0.613 5.613 16 C 0.098 3.902 17 C -0.118 4.118 18 C -0.079 4.079 19 C -0.132 4.132 20 C 0.167 3.833 21 N -0.728 5.728 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.117 3.883 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.385 0.615 50 H 0.254 0.746 51 H 0.066 0.934 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 26.662 7.323 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.053 4.053 8 C -0.104 4.104 9 H 0.146 0.854 10 C -0.180 4.180 11 C -0.192 4.192 12 H 0.141 0.859 13 C 0.349 3.651 14 O -0.423 6.423 15 N -0.345 5.345 16 C -0.025 4.025 17 C -0.156 4.156 18 C -0.081 4.081 19 C -0.190 4.190 20 C 0.039 3.961 21 N -0.373 5.373 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.006 4.006 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.038 0.962 48 H 0.037 0.963 49 H 0.219 0.781 50 H 0.064 0.936 51 H 0.084 0.916 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.094 26.641 7.778 27.925 hybrid contribution 0.230 -1.003 -0.123 1.036 sum 3.324 25.638 7.656 26.962 Atomic orbital electron populations 1.20879 0.91022 1.03314 1.02575 1.19759 0.96252 0.92325 0.99016 1.21033 0.94285 0.97376 1.01138 1.21137 0.94303 0.98076 1.00366 1.21103 0.99851 0.92415 1.00841 1.21079 0.93532 0.98413 1.00324 1.18995 0.93010 0.92700 1.00584 1.21101 1.00923 0.87894 1.00491 0.85368 1.23147 1.00395 0.98749 0.95727 1.22276 1.00174 1.03142 0.93609 0.85863 1.19170 0.88599 0.78882 0.78404 1.90690 1.27823 1.67077 1.56735 1.48698 1.13129 1.40572 1.32138 1.22661 0.86982 0.97304 0.95543 1.22765 0.96042 0.93252 1.03518 1.21650 0.94979 0.94951 0.96480 1.21809 1.01978 1.01546 0.93650 1.20704 0.95228 0.85523 0.94620 1.42358 1.51880 1.01582 1.41505 1.19279 1.20479 0.83718 1.13292 0.91224 1.24714 0.99734 0.97885 0.98697 1.69659 1.31858 1.30413 1.26363 0.86129 0.77281 0.85083 0.77790 1.20596 1.21906 1.21924 1.22147 0.90719 0.90262 0.97447 0.91011 0.91601 0.90626 0.86063 0.86169 0.86062 0.85771 0.87538 0.87353 0.91048 0.90311 0.90097 0.89693 0.92628 0.93471 0.90846 0.96182 0.96270 0.78076 0.93617 0.91585 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.33 36.00 0.34 -0.67 16 2 C -0.07 -0.68 5.88 -104.63 -0.62 -1.29 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 4 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 5 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 6 C -0.12 -0.98 9.30 -39.58 -0.37 -1.35 16 7 C -0.05 -0.50 5.61 -104.62 -0.59 -1.09 16 8 C -0.09 -0.87 4.66 -91.77 -0.43 -1.30 16 9 H 0.13 1.46 6.43 -51.93 -0.33 1.12 16 10 C -0.14 -1.33 9.56 -26.73 -0.26 -1.59 16 11 C -0.17 -1.82 4.89 -91.77 -0.45 -2.27 16 12 H 0.12 1.14 7.61 -51.93 -0.39 0.74 16 13 C 0.56 7.92 7.67 -10.99 -0.08 7.83 16 14 O -0.55 -9.48 16.60 5.55 0.09 -9.39 16 15 N -0.61 -8.29 3.29 -169.77 -0.56 -8.85 16 16 C 0.10 1.11 6.84 -2.12 -0.01 1.09 16 17 C -0.12 -1.66 5.73 -24.86 -0.14 -1.81 16 18 C -0.08 -1.23 0.67 -153.15 -0.10 -1.33 16 19 C -0.13 -1.96 8.03 37.16 0.30 -1.66 16 20 C 0.17 3.33 4.84 -4.04 -0.02 3.31 16 21 N -0.73 -17.80 5.13 -59.90 -0.31 -18.10 16 22 C -0.24 -6.54 9.99 -15.06 -0.15 -6.70 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 26 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 30 C 0.12 1.70 6.28 -2.99 -0.02 1.68 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.07 0.73 6.65 -51.93 -0.35 0.38 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.12 0.87 6.02 -52.49 -0.32 0.55 16 38 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.11 0.79 6.17 -51.93 -0.32 0.47 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.75 7.16 -51.93 -0.37 0.38 16 42 H 0.08 1.30 7.84 -51.93 -0.41 0.89 16 43 H 0.08 1.19 7.86 -51.93 -0.41 0.78 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 1.26 6.78 -51.93 -0.35 0.91 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.02 0.41 8.11 -51.93 -0.42 -0.02 16 49 H 0.38 9.68 6.19 -40.82 -0.25 9.43 16 50 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 51 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 52 H 0.08 1.25 7.60 -51.93 -0.39 0.85 16 LS Contribution 412.88 15.07 6.22 6.22 Total: -1.00 -32.33 412.88 -11.22 -43.54 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.49 Total: 7.88 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -3.88 Total: -11.68 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.14 Total: -53.91 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.33 -11.22 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724254514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.172 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds