Wall clock time and date at job start Wed Apr 1 2020 02:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 119.99821 * 2 1 4 4 C 1.38221 * 120.00216 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99832 * 359.95383 * 4 3 2 6 6 C 1.38217 * 120.00071 * 359.85620 * 5 4 3 7 7 C 1.38204 * 120.00467 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.00166 * 359.97438 * 7 2 1 9 9 H 1.09005 * 115.54604 * 334.33466 * 8 7 2 10 10 C 1.52999 * 117.50219 * 188.62149 * 8 7 2 11 11 C 1.52998 * 117.50106 * 119.99611 * 8 7 2 12 12 H 1.09003 * 117.49939 * 359.97438 * 11 8 7 13 13 C 1.50694 * 117.50267 * 214.98391 * 11 8 7 14 14 O 1.21284 * 119.99898 * 359.97438 * 13 11 8 15 15 N 1.34773 * 120.00278 * 180.02562 * 13 11 8 16 16 C 1.48127 * 127.03471 * 0.04136 * 15 13 11 17 17 C 1.54939 * 103.25486 * 140.67150 * 16 15 13 18 18 C 1.54620 * 102.83830 * 37.38260 * 17 16 15 19 19 C 1.52996 * 110.41723 * 97.08646 * 18 17 16 20 20 C 1.53005 * 110.32187 * 219.25911 * 18 17 16 21 21 N 1.46505 * 109.46904 * 295.61627 * 20 18 17 22 22 C 1.36931 * 119.99788 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 20 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48508 * 109.46872 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 119.99997 * 26 24 22 29 29 H 1.48498 * 109.47018 * 240.00044 * 26 24 22 30 30 C 1.47487 * 127.03945 * 179.97438 * 15 13 11 31 31 H 1.09000 * 109.46741 * 269.97310 * 1 2 3 32 32 H 1.08993 * 109.47451 * 29.97673 * 1 2 3 33 33 H 1.08994 * 109.46985 * 149.98354 * 1 2 3 34 34 H 1.08002 * 119.99931 * 359.97438 * 3 2 1 35 35 H 1.07998 * 119.99715 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.99950 * 180.02562 * 5 4 3 37 37 H 1.07992 * 119.99914 * 180.20499 * 6 5 4 38 38 H 1.09002 * 117.49851 * 145.02083 * 10 8 7 39 39 H 1.08997 * 117.49617 * 0.02562 * 10 8 7 40 40 H 1.08998 * 110.66183 * 259.11855 * 16 15 13 41 41 H 1.08997 * 110.65749 * 22.06417 * 16 15 13 42 42 H 1.08998 * 110.74329 * 279.04123 * 17 16 15 43 43 H 1.09005 * 110.73440 * 155.71611 * 17 16 15 44 44 H 1.08997 * 109.46892 * 182.89271 * 19 18 17 45 45 H 1.09005 * 109.46528 * 302.89336 * 19 18 17 46 46 H 1.08993 * 109.47136 * 62.88685 * 19 18 17 47 47 H 1.09003 * 109.46946 * 175.62386 * 20 18 17 48 48 H 1.08993 * 109.47679 * 55.61929 * 20 18 17 49 49 H 0.97000 * 119.99792 * 0.02562 * 21 20 18 50 50 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 51 51 H 1.09004 * 109.91141 * 86.11693 * 30 15 13 52 52 H 1.09001 * 110.06819 * 324.93602 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0001 6 6 3.5807 -1.1968 0.0039 7 6 2.1981 -1.1968 -0.0005 8 6 1.4447 -2.5020 -0.0005 9 1 0.4422 -2.4661 0.4258 10 6 2.2537 -3.7847 0.2023 11 6 1.6787 -3.4528 -1.1762 12 1 2.3772 -3.1341 -1.9499 13 6 0.5058 -4.2684 -1.6557 14 8 -0.5729 -4.1570 -1.1124 15 7 0.6555 -5.1224 -2.6875 16 6 1.8935 -5.3819 -3.4583 17 6 1.8514 -6.9128 -3.6932 18 6 0.3473 -7.1829 -3.9287 19 6 0.0433 -7.2392 -5.4271 20 6 -0.0699 -8.4909 -3.2532 21 7 0.6316 -9.6117 -3.8842 22 6 0.4154 -10.8900 -3.4435 23 1 -0.2726 -11.0721 -2.6311 24 6 1.0757 -11.9525 -4.0452 25 7 1.9136 -11.7307 -5.0356 26 14 0.7749 -13.6972 -3.4492 27 1 -0.2036 -13.6768 -2.3321 28 1 0.2361 -14.5155 -4.5650 29 1 2.0534 -14.2859 -2.9760 30 6 -0.3793 -5.9907 -3.2794 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8901 -0.5134 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6582 2.1327 -0.0004 35 1 4.1203 2.1328 -0.0010 36 1 5.3518 0.0003 -0.0001 37 1 4.1207 -2.1320 0.0075 38 1 1.7835 -4.5930 0.7624 39 1 3.3308 -3.6845 0.3362 40 1 1.8750 -4.8464 -4.4075 41 1 2.7732 -5.1034 -2.8781 42 1 2.2065 -7.4484 -2.8129 43 1 2.4347 -7.1844 -4.5731 44 1 -1.0275 -7.3788 -5.5756 45 1 0.3568 -6.3067 -5.8966 46 1 0.5841 -8.0720 -5.8765 47 1 -1.1457 -8.6286 -3.3612 48 1 0.1869 -8.4512 -2.1947 49 1 1.2492 -9.4482 -4.6141 50 1 2.3753 -12.4732 -5.4558 51 1 -0.9378 -5.4397 -4.0362 52 1 -1.0573 -6.3467 -2.5038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724254514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:57 Heat of formation + Delta-G solvation = 5.147193 kcal Electronic energy + Delta-G solvation = -29430.474479 eV Core-core repulsion = 25587.732861 eV Total energy + Delta-G solvation = -3842.741618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.59821 -40.62226 -39.42009 -37.24958 -36.47789 -34.36422 -33.71458 -32.16780 -31.46711 -30.54597 -28.20009 -27.74792 -27.46873 -25.35809 -24.86534 -23.98662 -23.77171 -22.31141 -21.15031 -20.31036 -19.82663 -19.18281 -18.43756 -17.38811 -17.18621 -16.85661 -16.45997 -16.07249 -15.79679 -15.75262 -15.48532 -15.10001 -15.01797 -14.85742 -14.67123 -14.39622 -14.13361 -13.92866 -13.77647 -13.48326 -13.18680 -13.17298 -13.07676 -13.05426 -12.94236 -12.87207 -12.75815 -12.60270 -12.15261 -12.10032 -12.05929 -11.88398 -11.68030 -11.57501 -11.50905 -11.43007 -11.38687 -10.96739 -10.94003 -9.76630 -9.65026 -9.37976 -8.98647 -7.95621 -5.22900 0.37642 0.50666 1.41827 1.46707 1.47069 1.56999 1.86761 2.55137 2.65995 3.07205 3.28757 3.37736 3.55351 3.64539 3.68577 3.78981 3.82769 3.93440 4.01416 4.08402 4.20170 4.21871 4.26691 4.28439 4.34053 4.41213 4.46139 4.62458 4.65721 4.67396 4.73918 4.76614 4.77518 4.79227 4.87134 4.89682 4.95302 4.98129 5.01955 5.10144 5.11293 5.19125 5.21435 5.25524 5.31487 5.38564 5.49127 5.52417 5.62503 5.65730 5.77308 6.14624 6.27388 6.50398 7.06696 7.34999 8.09184 8.36598 9.27612 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021416 B = 0.001988 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.120270 B =14080.537171 C =14341.346458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 C -0.128 4.128 4 C -0.124 4.124 5 C -0.129 4.129 6 C -0.121 4.121 7 C -0.067 4.067 8 C -0.084 4.084 9 H 0.107 0.893 10 C -0.132 4.132 11 C -0.171 4.171 12 H 0.145 0.855 13 C 0.554 3.446 14 O -0.587 6.587 15 N -0.614 5.614 16 C 0.106 3.894 17 C -0.116 4.116 18 C -0.071 4.071 19 C -0.125 4.125 20 C 0.167 3.833 21 N -0.734 5.734 22 C -0.246 4.246 23 H 0.068 0.932 24 C -0.070 4.070 25 N -0.963 5.963 26 Si 0.969 3.031 27 H -0.272 1.272 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.121 3.879 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.013 0.987 48 H 0.006 0.994 49 H 0.380 0.620 50 H 0.252 0.748 51 H 0.082 0.918 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 28.489 7.260 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.147 4.147 6 C -0.139 4.139 7 C -0.067 4.067 8 C -0.103 4.103 9 H 0.125 0.875 10 C -0.170 4.170 11 C -0.192 4.192 12 H 0.163 0.837 13 C 0.345 3.655 14 O -0.468 6.468 15 N -0.346 5.346 16 C -0.015 4.015 17 C -0.154 4.154 18 C -0.072 4.072 19 C -0.183 4.183 20 C 0.040 3.960 21 N -0.377 5.377 22 C -0.378 4.378 23 H 0.086 0.914 24 C -0.263 4.263 25 N -0.614 5.614 26 Si 0.799 3.201 27 H -0.197 1.197 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.002 4.002 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.154 0.846 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.031 0.969 48 H 0.024 0.976 49 H 0.214 0.786 50 H 0.061 0.939 51 H 0.100 0.900 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.741 28.484 7.723 29.891 hybrid contribution -0.326 -1.528 -0.055 1.563 sum 4.414 26.957 7.668 28.372 Atomic orbital electron populations 1.20836 0.91075 1.02889 1.02649 1.19949 0.96530 0.92942 0.99771 1.21276 0.94899 0.97560 1.00895 1.21472 0.94210 0.99148 0.99365 1.21424 1.01049 0.92141 1.00070 1.21284 0.93039 0.99523 1.00037 1.19022 0.93648 0.92190 1.01886 1.20980 1.00361 0.88827 1.00105 0.87459 1.23243 1.01703 0.97771 0.94237 1.22262 0.99256 1.03095 0.94553 0.83687 1.19817 0.89065 0.78822 0.77831 1.90668 1.29738 1.68472 1.57971 1.48797 1.13629 1.40030 1.32167 1.22783 0.86855 0.94986 0.96899 1.22694 0.94657 0.95468 1.02594 1.21502 0.96266 0.92799 0.96642 1.21736 1.01572 1.02156 0.92806 1.20778 0.94349 0.86739 0.94088 1.42455 1.52047 1.01790 1.41456 1.19600 1.19941 0.85273 1.12956 0.91450 1.25465 1.00041 1.01512 0.99251 1.69790 1.32884 1.31217 1.27519 0.85137 0.77118 0.80496 0.77376 1.19650 1.21907 1.21869 1.22000 0.90787 0.90256 0.97152 0.90751 0.90432 0.92544 0.84577 0.84017 0.83947 0.84303 0.88798 0.84645 0.88416 0.87780 0.92471 0.89317 0.92804 0.90196 0.93392 0.96860 0.97568 0.78604 0.93918 0.89988 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.33 71.23 0.66 -1.30 16 2 C -0.09 -1.62 5.88 -19.87 -0.12 -1.73 16 3 C -0.13 -1.86 9.70 22.27 0.22 -1.64 16 4 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 5 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 6 C -0.12 -1.75 9.30 22.27 0.21 -1.54 16 7 C -0.07 -1.20 5.61 -19.87 -0.11 -1.31 16 8 C -0.08 -1.67 4.66 -11.54 -0.05 -1.73 16 9 H 0.11 2.58 6.43 -2.38 -0.02 2.56 16 10 C -0.13 -2.29 9.56 30.59 0.29 -2.00 16 11 C -0.17 -3.39 4.89 -11.54 -0.06 -3.45 16 12 H 0.15 2.23 7.61 -2.39 -0.02 2.22 16 13 C 0.55 15.44 7.67 87.66 0.67 16.11 16 14 O -0.59 -21.04 16.60 -3.04 -0.05 -21.09 16 15 N -0.61 -15.91 3.29 -809.43 -2.66 -18.58 16 16 C 0.11 2.12 6.84 86.73 0.59 2.71 16 17 C -0.12 -3.16 5.73 31.81 0.18 -2.98 16 18 C -0.07 -2.18 0.67 -51.30 -0.03 -2.21 16 19 C -0.13 -3.59 8.03 71.98 0.58 -3.01 16 20 C 0.17 6.85 4.84 86.38 0.42 7.27 16 21 N -0.73 -36.62 5.13 -343.44 -1.76 -38.38 16 22 C -0.25 -13.80 9.99 84.04 0.84 -12.96 16 23 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 25 N -0.96 -57.70 13.06 21.65 0.28 -57.42 16 26 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 27 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 28 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 30 C 0.12 3.47 6.28 86.52 0.54 4.02 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 33 H 0.06 1.14 6.65 -2.39 -0.02 1.13 16 34 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 35 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.14 1.48 6.02 -2.91 -0.02 1.46 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.14 1.58 6.17 -2.39 -0.01 1.56 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.60 7.16 -2.39 -0.02 1.59 16 42 H 0.06 1.83 7.84 -2.39 -0.02 1.81 16 43 H 0.09 2.37 7.86 -2.38 -0.02 2.35 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.05 1.63 6.78 -2.39 -0.02 1.62 16 47 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.01 0.28 8.11 -2.39 -0.02 0.26 16 49 H 0.38 19.54 6.19 -92.71 -0.57 18.97 16 50 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 51 H 0.08 2.10 7.68 -2.38 -0.02 2.08 16 52 H 0.06 1.85 7.60 -2.39 -0.02 1.83 16 Total: -1.00 -71.23 412.88 3.92 -67.30 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.34 Total: 31.91 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 5.75 Total: -12.02 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -4.14 Total: -114.38 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -71.23 3.92 -67.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724254514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.451 kcal (2) G-P(sol) polarization free energy of solvation -71.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds