Wall clock time and date at job start Wed Apr 1 2020 02:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38250 * 120.00586 * 2 1 4 4 C 1.38210 * 120.00644 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00039 * 359.97438 * 4 3 2 6 6 C 1.38220 * 119.99612 * 359.75254 * 5 4 3 7 7 C 1.38220 * 119.99675 * 179.97438 * 2 1 3 8 8 C 1.50693 * 120.00222 * 359.97438 * 7 2 1 9 9 H 1.09000 * 115.56214 * 334.30763 * 8 7 2 10 10 C 1.52997 * 117.49961 * 188.62518 * 8 7 2 11 11 C 1.52997 * 117.49757 * 120.00056 * 8 7 2 12 12 H 1.08996 * 117.50230 * 359.97438 * 11 8 7 13 13 C 1.50695 * 117.49987 * 214.97848 * 11 8 7 14 14 O 1.21283 * 119.99932 * 0.02562 * 13 11 8 15 15 N 1.34779 * 120.00259 * 180.02562 * 13 11 8 16 16 C 1.48147 * 127.83874 * 359.97067 * 15 13 11 17 17 C 1.54386 * 104.61640 * 140.41941 * 16 15 13 18 18 C 1.54290 * 104.95956 * 23.87609 * 17 16 15 19 19 C 1.53004 * 110.33923 * 241.01937 * 18 17 16 20 20 C 1.52997 * 110.34497 * 118.86752 * 18 17 16 21 21 N 1.46505 * 109.47212 * 62.87261 * 20 18 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46968 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47299 * 119.99957 * 26 24 22 29 29 H 1.48495 * 109.47075 * 240.00117 * 26 24 22 30 30 C 1.48314 * 127.76928 * 179.91214 * 15 13 11 31 31 H 1.09003 * 109.47128 * 270.02078 * 1 2 3 32 32 H 1.08992 * 109.47250 * 30.02291 * 1 2 3 33 33 H 1.09001 * 109.47321 * 150.02605 * 1 2 3 34 34 H 1.08009 * 119.99624 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.00358 * 180.02562 * 4 3 2 36 36 H 1.08000 * 120.00237 * 180.02562 * 5 4 3 37 37 H 1.07997 * 119.99671 * 180.27713 * 6 5 4 38 38 H 1.09000 * 117.50185 * 145.02284 * 10 8 7 39 39 H 1.09002 * 117.50330 * 359.97438 * 10 8 7 40 40 H 1.09000 * 110.40196 * 21.64019 * 16 15 13 41 41 H 1.08999 * 110.41336 * 259.21098 * 16 15 13 42 42 H 1.08994 * 110.34661 * 265.00279 * 17 16 15 43 43 H 1.09004 * 110.34005 * 142.74056 * 17 16 15 44 44 H 1.09000 * 109.47294 * 297.12236 * 19 18 17 45 45 H 1.08999 * 109.47078 * 57.12169 * 19 18 17 46 46 H 1.08998 * 109.47055 * 177.12093 * 19 18 17 47 47 H 1.09002 * 109.47153 * 302.87254 * 20 18 17 48 48 H 1.09001 * 109.46832 * 182.87444 * 20 18 17 49 49 H 0.96996 * 119.99606 * 0.02562 * 21 20 18 50 50 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 51 51 H 1.09000 * 110.38574 * 100.78884 * 30 15 13 52 52 H 1.08996 * 110.51184 * 338.30351 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1971 0.0073 7 6 2.1980 -1.1971 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.4421 -2.4660 0.4284 10 6 2.2533 -3.7847 0.2058 11 6 1.6785 -3.4539 -1.1731 12 1 2.3770 -3.1361 -1.9470 13 6 0.5055 -4.2699 -1.6518 14 8 -0.5734 -4.1573 -1.1092 15 7 0.6552 -5.1248 -2.6829 16 6 1.8827 -5.3979 -3.4662 17 6 1.8607 -6.9229 -3.7059 18 6 0.3750 -7.3229 -3.5901 19 6 0.1801 -8.3189 -2.4451 20 6 -0.1179 -7.9251 -4.9073 21 7 0.6276 -9.1537 -5.1919 22 6 0.3570 -9.8717 -6.3261 23 1 -0.4057 -9.5319 -7.0111 24 6 1.0630 -11.0360 -6.5954 25 7 1.9922 -11.4503 -5.7604 26 14 0.6944 -12.0151 -8.1430 27 1 -0.3846 -11.3417 -8.9095 28 1 1.9182 -12.0972 -8.9801 29 1 0.2570 -13.3843 -7.7701 30 6 -0.3724 -6.0060 -3.2889 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8897 -0.5141 33 1 -0.3634 -0.8902 -0.5134 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 5.3517 -0.0002 0.0024 37 1 4.1206 -2.1324 0.0127 38 1 1.7830 -4.5924 0.7666 39 1 3.3305 -3.6846 0.3388 40 1 2.7678 -5.1155 -2.8962 41 1 1.8545 -4.8634 -4.4157 42 1 2.4512 -7.4345 -2.9459 43 1 2.2392 -7.1554 -4.7013 44 1 0.7344 -9.2325 -2.6599 45 1 0.5468 -7.8813 -1.5165 46 1 -0.8797 -8.5523 -2.3431 47 1 0.0385 -7.2099 -5.7149 48 1 -1.1803 -8.1552 -4.8265 49 1 1.3124 -9.4590 -4.5764 50 1 2.4854 -12.2642 -5.9483 51 1 -0.7540 -5.5664 -4.2104 52 1 -1.1863 -6.1831 -2.5859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724254515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:02 Heat of formation + Delta-G solvation = 22.394766 kcal Electronic energy + Delta-G solvation = -29397.674533 eV Core-core repulsion = 25555.680826 eV Total energy + Delta-G solvation = -3841.993708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.64691 -39.75630 -38.30899 -36.37166 -34.81411 -33.13563 -32.66111 -30.91177 -30.19598 -29.46738 -27.30184 -26.92980 -25.71623 -24.32039 -23.86688 -22.80889 -22.28385 -21.71089 -20.47307 -19.17841 -18.56176 -17.61487 -17.18240 -16.58624 -16.06883 -15.77165 -15.32228 -15.15512 -14.71253 -14.56996 -14.13024 -14.01616 -13.81010 -13.69625 -13.42416 -13.37332 -13.08421 -12.80315 -12.54596 -12.50776 -12.43999 -12.35727 -12.16852 -12.08586 -11.68443 -11.47434 -11.20729 -11.15091 -11.01369 -10.94260 -10.84762 -10.70570 -10.56409 -10.39085 -10.20810 -9.94407 -9.85178 -9.66546 -9.06856 -8.89554 -8.75911 -8.66228 -6.93107 -5.78541 -3.06674 0.98293 1.08455 2.43378 2.87136 3.34023 3.42073 3.48240 3.50082 3.78848 4.16737 4.41577 4.52973 4.53569 4.57777 4.62567 4.70856 4.73979 4.80503 4.91207 4.96776 5.03488 5.10025 5.24359 5.33711 5.34133 5.39304 5.40641 5.47225 5.53349 5.57492 5.59385 5.63071 5.76587 5.78711 5.80568 5.91868 5.92104 5.95802 5.99534 6.13838 6.20823 6.21952 6.22841 6.28062 6.38305 6.43977 6.59145 6.67716 6.70490 6.79636 6.83824 7.57909 7.69541 8.14010 8.40656 9.52320 10.09749 10.44875 11.44365 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.001916 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.223861 B =14606.802237 C =14990.246341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.085 4.085 9 H 0.128 0.872 10 C -0.143 4.143 11 C -0.171 4.171 12 H 0.124 0.876 13 C 0.563 3.437 14 O -0.547 6.547 15 N -0.615 5.615 16 C 0.100 3.900 17 C -0.123 4.123 18 C -0.079 4.079 19 C -0.130 4.130 20 C 0.166 3.834 21 N -0.729 5.729 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.116 3.884 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.052 0.948 47 H 0.021 0.979 48 H 0.021 0.979 49 H 0.385 0.615 50 H 0.254 0.746 51 H 0.073 0.927 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 24.346 13.605 28.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.053 4.053 8 C -0.104 4.104 9 H 0.146 0.854 10 C -0.181 4.181 11 C -0.192 4.192 12 H 0.142 0.858 13 C 0.352 3.648 14 O -0.425 6.425 15 N -0.348 5.348 16 C -0.023 4.023 17 C -0.161 4.161 18 C -0.080 4.080 19 C -0.187 4.187 20 C 0.038 3.962 21 N -0.374 5.374 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.582 5.582 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.007 4.007 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.039 0.961 48 H 0.039 0.961 49 H 0.220 0.780 50 H 0.064 0.936 51 H 0.091 0.909 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.953 24.426 13.811 28.215 hybrid contribution 0.249 -0.739 -0.855 1.157 sum 3.202 23.687 12.956 27.188 Atomic orbital electron populations 1.20879 0.91018 1.03340 1.02553 1.19759 0.96254 0.92326 0.99003 1.21032 0.94288 0.97389 1.01110 1.21139 0.94306 0.98085 1.00324 1.21106 0.99856 0.92416 1.00830 1.21073 0.93523 0.98402 1.00348 1.18991 0.93007 0.92690 1.00641 1.21096 1.00892 0.87887 1.00490 0.85375 1.23138 1.00377 0.98773 0.95776 1.22284 1.00206 1.03111 0.93600 0.85842 1.19136 0.88561 0.78745 0.78360 1.90687 1.27816 1.67150 1.56833 1.48930 1.13309 1.40511 1.32008 1.22510 0.87153 0.97251 0.95346 1.22638 0.96367 0.93148 1.03976 1.21669 0.94824 0.94010 0.97523 1.21780 1.01877 0.99125 0.95949 1.20660 0.94862 0.89251 0.91387 1.42368 1.44207 1.24441 1.26345 1.19271 1.15831 1.03101 0.98657 0.91169 1.24721 0.98965 0.98539 0.98784 1.69660 1.26577 1.24807 1.37179 0.86129 0.77336 0.80025 0.82773 1.20589 1.21928 1.21921 1.22477 0.91368 0.89016 0.97813 0.91022 0.91581 0.90630 0.86049 0.86155 0.86055 0.85795 0.87627 0.87378 0.90524 0.90969 0.90974 0.88894 0.91115 0.93753 0.92849 0.96096 0.96120 0.78036 0.93593 0.90916 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.33 36.00 0.34 -0.66 16 2 C -0.07 -0.67 5.88 -104.63 -0.62 -1.29 16 3 C -0.12 -0.97 9.70 -39.59 -0.38 -1.36 16 4 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16 5 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 6 C -0.12 -0.96 9.30 -39.58 -0.37 -1.33 16 7 C -0.05 -0.50 5.61 -104.62 -0.59 -1.09 16 8 C -0.09 -0.84 4.66 -91.78 -0.43 -1.27 16 9 H 0.13 1.42 6.43 -51.93 -0.33 1.08 16 10 C -0.14 -1.26 9.56 -26.73 -0.26 -1.52 16 11 C -0.17 -1.77 4.94 -91.77 -0.45 -2.23 16 12 H 0.12 1.14 7.65 -51.93 -0.40 0.74 16 13 C 0.56 7.74 7.70 -10.99 -0.08 7.66 16 14 O -0.55 -9.25 16.53 5.56 0.09 -9.16 16 15 N -0.61 -8.17 3.32 -169.17 -0.56 -8.73 16 16 C 0.10 1.16 6.82 -2.41 -0.02 1.14 16 17 C -0.12 -1.75 5.84 -25.33 -0.15 -1.90 16 18 C -0.08 -1.23 0.73 -153.11 -0.11 -1.34 16 19 C -0.13 -2.09 8.06 37.16 0.30 -1.79 16 20 C 0.17 3.19 4.89 -4.04 -0.02 3.17 16 21 N -0.73 -17.56 4.96 -59.91 -0.30 -17.86 16 22 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 26 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 C 0.12 1.66 6.15 -2.32 -0.01 1.64 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.07 0.72 6.65 -51.93 -0.35 0.37 16 34 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 35 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.12 0.84 6.02 -52.49 -0.32 0.53 16 38 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.11 0.74 6.17 -51.93 -0.32 0.42 16 40 H 0.08 0.73 7.21 -51.93 -0.37 0.36 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.02 7.71 -51.93 -0.40 0.62 16 43 H 0.09 1.49 7.53 -51.93 -0.39 1.10 16 44 H 0.07 1.29 6.87 -51.93 -0.36 0.93 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.38 9.69 6.22 -40.82 -0.25 9.43 16 50 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 51 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 52 H 0.08 1.24 7.60 -51.93 -0.39 0.84 16 LS Contribution 412.82 15.07 6.22 6.22 Total: -1.00 -31.85 412.82 -11.22 -43.07 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.49 Total: 8.12 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -3.89 Total: -11.91 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.13 Total: -53.44 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.85 -11.22 -43.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724254515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.467 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds