Wall clock time and date at job start Wed Apr 1 2020 02:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38250 * 120.00586 * 2 1 4 4 C 1.38210 * 120.00644 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00039 * 359.97438 * 4 3 2 6 6 C 1.38220 * 119.99612 * 359.75254 * 5 4 3 7 7 C 1.38220 * 119.99675 * 179.97438 * 2 1 3 8 8 C 1.50693 * 120.00222 * 359.97438 * 7 2 1 9 9 H 1.09000 * 115.56214 * 334.30763 * 8 7 2 10 10 C 1.52997 * 117.49961 * 188.62518 * 8 7 2 11 11 C 1.52997 * 117.49757 * 120.00056 * 8 7 2 12 12 H 1.08996 * 117.50230 * 359.97438 * 11 8 7 13 13 C 1.50695 * 117.49987 * 214.97848 * 11 8 7 14 14 O 1.21283 * 119.99932 * 0.02562 * 13 11 8 15 15 N 1.34779 * 120.00259 * 180.02562 * 13 11 8 16 16 C 1.48147 * 127.83874 * 359.97067 * 15 13 11 17 17 C 1.54386 * 104.61640 * 140.41941 * 16 15 13 18 18 C 1.54290 * 104.95956 * 23.87609 * 17 16 15 19 19 C 1.53004 * 110.33923 * 241.01937 * 18 17 16 20 20 C 1.52997 * 110.34497 * 118.86752 * 18 17 16 21 21 N 1.46505 * 109.47212 * 62.87261 * 20 18 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46968 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47299 * 119.99957 * 26 24 22 29 29 H 1.48495 * 109.47075 * 240.00117 * 26 24 22 30 30 C 1.48314 * 127.76928 * 179.91214 * 15 13 11 31 31 H 1.09003 * 109.47128 * 270.02078 * 1 2 3 32 32 H 1.08992 * 109.47250 * 30.02291 * 1 2 3 33 33 H 1.09001 * 109.47321 * 150.02605 * 1 2 3 34 34 H 1.08009 * 119.99624 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.00358 * 180.02562 * 4 3 2 36 36 H 1.08000 * 120.00237 * 180.02562 * 5 4 3 37 37 H 1.07997 * 119.99671 * 180.27713 * 6 5 4 38 38 H 1.09000 * 117.50185 * 145.02284 * 10 8 7 39 39 H 1.09002 * 117.50330 * 359.97438 * 10 8 7 40 40 H 1.09000 * 110.40196 * 21.64019 * 16 15 13 41 41 H 1.08999 * 110.41336 * 259.21098 * 16 15 13 42 42 H 1.08994 * 110.34661 * 265.00279 * 17 16 15 43 43 H 1.09004 * 110.34005 * 142.74056 * 17 16 15 44 44 H 1.09000 * 109.47294 * 297.12236 * 19 18 17 45 45 H 1.08999 * 109.47078 * 57.12169 * 19 18 17 46 46 H 1.08998 * 109.47055 * 177.12093 * 19 18 17 47 47 H 1.09002 * 109.47153 * 302.87254 * 20 18 17 48 48 H 1.09001 * 109.46832 * 182.87444 * 20 18 17 49 49 H 0.96996 * 119.99606 * 0.02562 * 21 20 18 50 50 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 51 51 H 1.09000 * 110.38574 * 100.78884 * 30 15 13 52 52 H 1.08996 * 110.51184 * 338.30351 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1971 0.0073 7 6 2.1980 -1.1971 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.4421 -2.4660 0.4284 10 6 2.2533 -3.7847 0.2058 11 6 1.6785 -3.4539 -1.1731 12 1 2.3770 -3.1361 -1.9470 13 6 0.5055 -4.2699 -1.6518 14 8 -0.5734 -4.1573 -1.1092 15 7 0.6552 -5.1248 -2.6829 16 6 1.8827 -5.3979 -3.4662 17 6 1.8607 -6.9229 -3.7059 18 6 0.3750 -7.3229 -3.5901 19 6 0.1801 -8.3189 -2.4451 20 6 -0.1179 -7.9251 -4.9073 21 7 0.6276 -9.1537 -5.1919 22 6 0.3570 -9.8717 -6.3261 23 1 -0.4057 -9.5319 -7.0111 24 6 1.0630 -11.0360 -6.5954 25 7 1.9922 -11.4503 -5.7604 26 14 0.6944 -12.0151 -8.1430 27 1 -0.3846 -11.3417 -8.9095 28 1 1.9182 -12.0972 -8.9801 29 1 0.2570 -13.3843 -7.7701 30 6 -0.3724 -6.0060 -3.2889 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8897 -0.5141 33 1 -0.3634 -0.8902 -0.5134 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 5.3517 -0.0002 0.0024 37 1 4.1206 -2.1324 0.0127 38 1 1.7830 -4.5924 0.7666 39 1 3.3305 -3.6846 0.3388 40 1 2.7678 -5.1155 -2.8962 41 1 1.8545 -4.8634 -4.4157 42 1 2.4512 -7.4345 -2.9459 43 1 2.2392 -7.1554 -4.7013 44 1 0.7344 -9.2325 -2.6599 45 1 0.5468 -7.8813 -1.5165 46 1 -0.8797 -8.5523 -2.3431 47 1 0.0385 -7.2099 -5.7149 48 1 -1.1803 -8.1552 -4.8265 49 1 1.3124 -9.4590 -4.5764 50 1 2.4854 -12.2642 -5.9483 51 1 -0.7540 -5.5664 -4.2104 52 1 -1.1863 -6.1831 -2.5859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724254515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:01 Heat of formation + Delta-G solvation = 6.620082 kcal Electronic energy + Delta-G solvation = -29398.358575 eV Core-core repulsion = 25555.680826 eV Total energy + Delta-G solvation = -3842.677749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.57051 -40.60714 -39.39908 -37.23637 -36.44133 -34.32415 -33.71381 -32.08894 -31.45684 -30.61421 -28.29481 -27.76078 -27.38852 -25.31796 -24.85171 -24.05791 -23.67502 -22.31023 -21.14005 -20.31462 -19.76170 -19.18909 -18.43191 -17.34577 -17.02790 -16.94400 -16.56274 -16.06421 -15.82475 -15.56645 -15.45606 -15.14145 -14.98952 -14.76614 -14.67300 -14.35730 -14.23435 -13.94165 -13.77434 -13.64435 -13.29209 -13.16861 -13.05464 -13.01219 -12.86751 -12.83495 -12.79446 -12.41023 -12.09925 -12.06865 -12.03977 -11.88625 -11.68985 -11.61682 -11.55371 -11.42354 -11.34801 -10.94990 -10.91550 -9.77653 -9.65126 -9.37794 -8.95270 -7.92737 -5.20018 0.37696 0.50620 1.42969 1.48780 1.49382 1.59020 1.85324 2.57716 2.66302 3.07400 3.30276 3.41281 3.58529 3.64882 3.69995 3.78156 3.85550 3.94525 4.01864 4.09606 4.20817 4.22128 4.26994 4.30497 4.36983 4.38474 4.46004 4.61908 4.65886 4.68428 4.72862 4.75963 4.77045 4.79315 4.83878 4.91495 4.97796 4.98342 5.01004 5.05446 5.12113 5.15358 5.19523 5.31404 5.35304 5.39558 5.44662 5.53316 5.62446 5.65660 5.77215 6.14604 6.29965 6.52954 7.07230 7.37458 8.13106 8.37866 9.30771 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.001916 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.223861 B =14606.802237 C =14990.246341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.130 4.130 6 C -0.121 4.121 7 C -0.068 4.068 8 C -0.086 4.086 9 H 0.109 0.891 10 C -0.129 4.129 11 C -0.173 4.173 12 H 0.142 0.858 13 C 0.559 3.441 14 O -0.586 6.586 15 N -0.614 5.614 16 C 0.108 3.892 17 C -0.119 4.119 18 C -0.071 4.071 19 C -0.123 4.123 20 C 0.167 3.833 21 N -0.737 5.737 22 C -0.240 4.240 23 H 0.074 0.926 24 C -0.074 4.074 25 N -0.967 5.967 26 Si 0.969 3.031 27 H -0.268 1.268 28 H -0.293 1.293 29 H -0.296 1.296 30 C 0.120 3.880 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.028 0.972 48 H 0.016 0.984 49 H 0.378 0.622 50 H 0.250 0.750 51 H 0.080 0.920 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.004 26.210 13.543 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.139 4.139 7 C -0.068 4.068 8 C -0.104 4.104 9 H 0.127 0.873 10 C -0.166 4.166 11 C -0.194 4.194 12 H 0.160 0.840 13 C 0.349 3.651 14 O -0.467 6.467 15 N -0.346 5.346 16 C -0.014 4.014 17 C -0.158 4.158 18 C -0.073 4.073 19 C -0.180 4.180 20 C 0.040 3.960 21 N -0.380 5.380 22 C -0.372 4.372 23 H 0.092 0.908 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.799 3.201 27 H -0.193 1.193 28 H -0.220 1.220 29 H -0.224 1.224 30 C -0.003 4.003 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.116 0.884 39 H 0.153 0.847 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.045 0.955 48 H 0.034 0.966 49 H 0.211 0.789 50 H 0.059 0.941 51 H 0.099 0.901 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.317 26.322 13.737 30.003 hybrid contribution -0.233 -1.251 -0.798 1.502 sum 4.084 25.072 12.939 28.507 Atomic orbital electron populations 1.20835 0.91053 1.02866 1.02677 1.19956 0.96550 0.92960 0.99775 1.21272 0.94901 0.97592 1.00933 1.21469 0.94222 0.99155 0.99415 1.21429 1.01046 0.92174 1.00091 1.21290 0.93058 0.99509 1.00015 1.19036 0.93645 0.92265 1.01809 1.20987 1.00451 0.88832 1.00150 0.87341 1.23250 1.01661 0.97704 0.93968 1.22258 0.99337 1.03196 0.94593 0.84038 1.19744 0.89018 0.78573 0.77724 1.90669 1.29620 1.68391 1.57991 1.48976 1.13526 1.40100 1.32016 1.22573 0.87447 0.95110 0.96290 1.22546 0.94927 0.95335 1.02955 1.21511 0.96172 0.94285 0.95286 1.21689 1.01290 0.98275 0.96763 1.20765 0.94046 0.87706 0.93511 1.42507 1.44412 1.25670 1.25447 1.19640 1.15133 1.03159 0.99301 0.90846 1.25480 0.99423 0.99901 1.01804 1.69803 1.27842 1.25197 1.38952 0.85129 0.77218 0.78244 0.79498 1.19260 1.22044 1.22351 1.22317 0.91305 0.88618 0.98037 0.90659 0.90544 0.92510 0.84640 0.84083 0.83972 0.84221 0.88385 0.84721 0.87628 0.89607 0.90879 0.90702 0.93526 0.92452 0.93185 0.95458 0.96593 0.78893 0.94080 0.90138 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.33 71.23 0.66 -1.26 16 2 C -0.09 -1.61 5.88 -19.87 -0.12 -1.73 16 3 C -0.13 -1.87 9.70 22.27 0.22 -1.66 16 4 C -0.12 -1.57 10.05 22.27 0.22 -1.34 16 5 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 6 C -0.12 -1.71 9.30 22.27 0.21 -1.50 16 7 C -0.07 -1.18 5.61 -19.87 -0.11 -1.29 16 8 C -0.09 -1.62 4.66 -11.54 -0.05 -1.67 16 9 H 0.11 2.48 6.43 -2.39 -0.02 2.47 16 10 C -0.13 -2.01 9.56 30.59 0.29 -1.72 16 11 C -0.17 -3.29 4.94 -11.54 -0.06 -3.34 16 12 H 0.14 2.17 7.65 -2.39 -0.02 2.15 16 13 C 0.56 14.87 7.70 87.65 0.67 15.54 16 14 O -0.59 -20.04 16.53 -3.04 -0.05 -20.09 16 15 N -0.61 -15.43 3.32 -807.53 -2.68 -18.11 16 16 C 0.11 2.23 6.82 86.53 0.59 2.82 16 17 C -0.12 -3.26 5.84 31.50 0.18 -3.07 16 18 C -0.07 -2.19 0.73 -51.27 -0.04 -2.23 16 19 C -0.12 -3.97 8.06 71.98 0.58 -3.39 16 20 C 0.17 6.38 4.89 86.38 0.42 6.80 16 21 N -0.74 -35.84 4.96 -343.45 -1.70 -37.54 16 22 C -0.24 -13.12 9.99 84.03 0.84 -12.28 16 23 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 24 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 25 N -0.97 -57.92 13.06 21.65 0.28 -57.64 16 26 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 30 C 0.12 3.36 6.15 86.50 0.53 3.89 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 33 H 0.06 1.13 6.65 -2.39 -0.02 1.11 16 34 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 35 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 36 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.14 1.41 6.02 -2.91 -0.02 1.39 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.13 1.37 6.17 -2.39 -0.01 1.36 16 40 H 0.11 1.63 7.21 -2.39 -0.02 1.61 16 41 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 1.98 7.71 -2.39 -0.02 1.96 16 43 H 0.07 2.35 7.53 -2.39 -0.02 2.34 16 44 H 0.05 1.73 6.87 -2.39 -0.02 1.71 16 45 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.38 19.39 6.22 -92.71 -0.58 18.81 16 50 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 51 H 0.08 2.13 7.86 -2.39 -0.02 2.11 16 52 H 0.07 2.17 7.60 -2.39 -0.02 2.15 16 Total: -1.00 -69.07 412.82 3.95 -65.12 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.34 Total: 33.09 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 5.74 Total: -12.52 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -4.10 Total: -113.28 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.07 3.95 -65.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724254515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.738 kcal (2) G-P(sol) polarization free energy of solvation -69.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds