Wall clock time and date at job start Wed Apr 1 2020 02:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38251 * 119.99731 * 2 1 4 4 C 1.38217 * 119.99903 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00171 * 359.95725 * 4 3 2 6 6 C 1.38207 * 119.99934 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00234 * 180.02562 * 6 5 4 8 8 H 1.08995 * 115.56431 * 154.30540 * 7 6 5 9 9 C 1.53001 * 117.49548 * 8.61855 * 7 6 5 10 10 C 1.53002 * 117.49640 * 299.99789 * 7 6 5 11 11 H 1.08992 * 117.51810 * 0.02562 * 10 7 6 12 12 C 1.50702 * 117.49844 * 214.97800 * 10 7 6 13 13 O 1.21286 * 119.99915 * 359.97438 * 12 10 7 14 14 N 1.34768 * 120.00075 * 179.97438 * 12 10 7 15 15 C 1.48119 * 127.03350 * 0.04459 * 14 12 10 16 16 C 1.54941 * 103.25815 * 140.67251 * 15 14 12 17 17 C 1.54618 * 102.83712 * 37.37456 * 16 15 14 18 18 C 1.53004 * 110.41470 * 97.08845 * 17 16 15 19 19 C 1.53004 * 110.32597 * 219.25886 * 17 16 15 20 20 N 1.46499 * 109.47198 * 295.62213 * 19 17 16 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47173 * 60.00435 * 25 23 21 27 27 H 1.48497 * 109.47172 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47132 * 300.00314 * 25 23 21 29 29 C 1.47483 * 127.03408 * 179.97438 * 14 12 10 30 30 C 1.38215 * 120.00215 * 180.16761 * 2 1 3 31 31 H 1.08996 * 109.47128 * 90.00084 * 1 2 3 32 32 H 1.09001 * 109.46725 * 209.99983 * 1 2 3 33 33 H 1.08996 * 109.47357 * 329.99811 * 1 2 3 34 34 H 1.08003 * 120.00480 * 0.02562 * 3 2 1 35 35 H 1.08006 * 119.99936 * 179.97438 * 4 3 2 36 36 H 1.07999 * 119.99852 * 179.97438 * 5 4 3 37 37 H 1.08997 * 117.49724 * 145.02083 * 9 7 6 38 38 H 1.08991 * 117.52195 * 359.97438 * 9 7 6 39 39 H 1.08999 * 110.65977 * 259.11104 * 15 14 12 40 40 H 1.08998 * 110.66305 * 22.22605 * 15 14 12 41 41 H 1.09004 * 110.73883 * 279.03985 * 16 15 14 42 42 H 1.08996 * 110.74255 * 155.71173 * 16 15 14 43 43 H 1.08995 * 109.47357 * 182.89106 * 18 17 16 44 44 H 1.09001 * 109.46782 * 302.89801 * 18 17 16 45 45 H 1.09003 * 109.46669 * 62.89281 * 18 17 16 46 46 H 1.09009 * 109.46730 * 175.62001 * 19 17 16 47 47 H 1.08998 * 109.46846 * 55.62545 * 19 17 16 48 48 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 49 49 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.91189 * 86.12833 * 29 14 12 51 51 H 1.08997 * 109.91688 * 324.84525 * 29 14 12 52 52 H 1.07995 * 120.00337 * 0.04508 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0002 6 6 3.5807 -1.1969 0.0013 7 6 4.3342 -2.5019 0.0022 8 1 3.8023 -3.3519 0.4296 9 6 5.8496 -2.4425 0.2050 10 6 5.2746 -2.7756 -1.1733 11 1 5.3488 -2.0117 -1.9472 12 6 5.3944 -4.1996 -1.6517 13 8 4.7586 -5.0776 -1.1077 14 7 6.2080 -4.4975 -2.6839 15 6 7.0508 -3.5556 -3.4561 16 6 8.3556 -4.3574 -3.6916 17 6 7.8377 -5.7954 -3.9254 18 6 7.7331 -6.0880 -5.4235 19 6 8.7627 -6.8098 -3.2499 20 7 10.0835 -6.7629 -3.8821 21 6 11.0816 -7.5924 -3.4450 22 1 10.8963 -8.2780 -2.6313 23 6 12.3313 -7.5521 -4.0478 24 7 12.5571 -6.7162 -5.0392 25 14 13.6930 -8.6830 -3.4511 26 1 13.2656 -10.0968 -3.6058 27 1 14.9202 -8.4460 -4.2528 28 1 13.9758 -8.4051 -2.0200 29 6 6.4423 -5.8283 -3.2749 30 6 2.1981 -1.1969 -0.0035 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1327 -0.0010 36 1 5.3517 0.0002 -0.0010 37 1 6.3145 -3.2534 0.7657 38 1 6.3019 -1.4598 0.3372 39 1 6.5770 -3.3049 -4.4052 40 1 7.2522 -2.6551 -2.8758 41 1 8.9978 -4.3167 -2.8118 42 1 8.8816 -3.9887 -4.5722 43 1 7.3188 -7.0854 -5.5709 44 1 7.0818 -5.3509 -5.8931 45 1 8.7244 -6.0362 -5.8738 46 1 8.3440 -7.8106 -3.3567 47 1 8.8575 -6.5666 -2.1916 48 1 10.2497 -6.1474 -4.6131 49 1 13.4305 -6.6878 -5.4601 50 1 5.6854 -6.0373 -4.0309 51 1 6.4136 -6.5906 -2.4963 52 1 1.6582 -2.1323 -0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724255633.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:07 Heat of formation + Delta-G solvation = 19.981711 kcal Electronic energy + Delta-G solvation = -29105.762856 eV Core-core repulsion = 25263.664511 eV Total energy + Delta-G solvation = -3842.098345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.58414 -39.73883 -38.36277 -36.49626 -34.80929 -32.86369 -32.66323 -31.14082 -30.27574 -29.38365 -27.31176 -26.90747 -25.79575 -24.16038 -23.68990 -22.81483 -22.42047 -22.18760 -20.05355 -19.12422 -18.62033 -17.60684 -17.13090 -16.69490 -16.14384 -15.74939 -15.29075 -15.25070 -14.63513 -14.40731 -14.13454 -14.05423 -13.95479 -13.65255 -13.46339 -13.33975 -13.17662 -12.67239 -12.59974 -12.53675 -12.49598 -12.32417 -12.14326 -12.05871 -11.71066 -11.58282 -11.37286 -11.23630 -11.02574 -10.91251 -10.80207 -10.68405 -10.59276 -10.31197 -10.26935 -9.94804 -9.83672 -9.64501 -9.04270 -8.86956 -8.79969 -8.63849 -6.91443 -5.77036 -3.04780 0.98401 1.08927 2.45773 2.89583 3.34621 3.44352 3.48768 3.49723 3.80746 4.15566 4.41419 4.51595 4.55817 4.58013 4.63338 4.69735 4.77431 4.80988 4.87745 4.96892 5.02202 5.10366 5.14265 5.24916 5.32174 5.36385 5.42179 5.43460 5.49981 5.51384 5.60695 5.66706 5.72402 5.75458 5.81239 5.85500 5.88865 5.95132 6.04833 6.08783 6.17706 6.24466 6.28258 6.34000 6.35578 6.42048 6.52087 6.67079 6.70763 6.78678 6.87093 7.57302 7.70398 8.16718 8.42482 9.53952 10.11242 10.46826 11.45836 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022752 B = 0.001878 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.366821 B =14904.772766 C =15162.735216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.125 4.125 6 C -0.046 4.046 7 C -0.085 4.085 8 H 0.127 0.873 9 C -0.142 4.142 10 C -0.171 4.171 11 H 0.124 0.876 12 C 0.561 3.439 13 O -0.545 6.545 14 N -0.613 5.613 15 C 0.098 3.902 16 C -0.118 4.118 17 C -0.080 4.080 18 C -0.132 4.132 19 C 0.167 3.833 20 N -0.728 5.728 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 C 0.117 3.883 30 C -0.110 4.110 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.020 0.980 47 H 0.019 0.981 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.066 0.934 51 H 0.078 0.922 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.606 17.514 7.251 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.143 4.143 6 C -0.046 4.046 7 C -0.104 4.104 8 H 0.145 0.855 9 C -0.180 4.180 10 C -0.192 4.192 11 H 0.142 0.858 12 C 0.349 3.651 13 O -0.423 6.423 14 N -0.346 5.346 15 C -0.025 4.025 16 C -0.156 4.156 17 C -0.081 4.081 18 C -0.190 4.190 19 C 0.039 3.961 20 N -0.373 5.373 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.006 4.006 30 C -0.128 4.128 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.084 0.916 51 H 0.096 0.904 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.914 16.932 7.698 28.744 hybrid contribution 1.010 -0.403 -0.115 1.093 sum -20.905 16.529 7.583 27.708 Atomic orbital electron populations 1.20799 0.91156 1.02802 1.02415 1.19912 0.96109 0.93051 0.99431 1.21037 0.94323 0.97460 1.01581 1.21109 0.94278 0.97901 0.99831 1.21071 1.00109 0.91902 1.01244 1.19115 0.93296 0.92916 0.99299 1.21088 0.91985 0.96817 1.00493 0.85545 1.23145 0.95278 1.03813 0.95730 1.22279 1.07542 0.95748 0.93630 0.85836 1.19172 0.78328 0.89153 0.78416 1.90693 1.45692 1.49225 1.56725 1.48699 1.43488 1.10288 1.32087 1.22663 0.91217 0.93103 0.95512 1.22769 0.95583 0.93724 1.03521 1.21654 0.93556 0.96379 0.96479 1.21810 1.02733 1.00780 0.93655 1.20703 0.86154 0.94597 0.94618 1.42339 1.06634 1.46810 1.41503 1.19190 0.90589 1.13804 1.13368 0.91341 1.24706 0.97743 0.99802 0.98675 1.69642 1.22755 1.39711 1.26212 0.86272 0.81680 0.80414 0.77848 1.21312 1.21716 1.21344 1.22158 0.96256 0.84713 0.97453 1.20891 0.93343 0.97804 1.00767 0.91118 0.91443 0.91562 0.86207 0.85981 0.85807 0.87532 0.87323 0.91026 0.90305 0.90095 0.89690 0.92630 0.93474 0.90845 0.96199 0.96279 0.78074 0.93523 0.91560 0.90401 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.09 -0.69 5.88 -104.63 -0.62 -1.31 16 3 C -0.13 -0.97 9.70 -39.58 -0.38 -1.35 16 4 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 5 C -0.13 -1.05 9.30 -39.59 -0.37 -1.42 16 6 C -0.05 -0.44 5.61 -104.62 -0.59 -1.03 16 7 C -0.09 -0.87 5.56 -91.77 -0.51 -1.38 16 8 H 0.13 1.45 7.67 -51.93 -0.40 1.05 16 9 C -0.14 -1.33 9.56 -26.73 -0.26 -1.58 16 10 C -0.17 -1.83 4.89 -91.77 -0.45 -2.28 16 11 H 0.12 1.14 7.60 -51.93 -0.39 0.75 16 12 C 0.56 8.02 7.67 -10.99 -0.08 7.94 16 13 O -0.55 -9.66 16.60 5.55 0.09 -9.57 16 14 N -0.61 -8.38 3.29 -169.78 -0.56 -8.93 16 15 C 0.10 1.11 6.84 -2.13 -0.01 1.10 16 16 C -0.12 -1.67 5.74 -24.86 -0.14 -1.82 16 17 C -0.08 -1.24 0.67 -153.14 -0.10 -1.34 16 18 C -0.13 -1.97 8.03 37.16 0.30 -1.67 16 19 C 0.17 3.34 4.84 -4.04 -0.02 3.32 16 20 N -0.73 -17.82 5.13 -59.90 -0.31 -18.13 16 21 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 25 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 C 0.12 1.71 6.28 -2.99 -0.02 1.69 16 30 C -0.11 -1.01 9.39 -39.58 -0.37 -1.39 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.12 0.86 6.02 -52.49 -0.32 0.54 16 37 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.11 0.79 6.18 -51.93 -0.32 0.47 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.75 7.16 -51.93 -0.37 0.38 16 41 H 0.08 1.30 7.84 -51.93 -0.41 0.90 16 42 H 0.08 1.19 7.86 -51.93 -0.41 0.78 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.27 6.78 -51.93 -0.35 0.91 16 46 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 47 H 0.02 0.41 8.11 -51.93 -0.42 -0.02 16 48 H 0.38 9.69 6.18 -40.82 -0.25 9.44 16 49 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 51 H 0.08 1.26 7.59 -51.93 -0.39 0.86 16 52 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 416.48 15.07 6.28 6.28 Total: -1.00 -32.46 416.48 -11.33 -43.79 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -8.63 Total: 7.52 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -3.91 Total: -11.34 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.14 Total: -54.02 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.46 -11.33 -43.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724255633.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.774 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds