Wall clock time and date at job start Wed Apr 1 2020 02:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38251 * 119.99731 * 2 1 4 4 C 1.38217 * 119.99903 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00171 * 359.95725 * 4 3 2 6 6 C 1.38207 * 119.99934 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00234 * 180.02562 * 6 5 4 8 8 H 1.08995 * 115.56431 * 154.30540 * 7 6 5 9 9 C 1.53001 * 117.49548 * 8.61855 * 7 6 5 10 10 C 1.53002 * 117.49640 * 299.99789 * 7 6 5 11 11 H 1.08992 * 117.51810 * 0.02562 * 10 7 6 12 12 C 1.50702 * 117.49844 * 214.97800 * 10 7 6 13 13 O 1.21286 * 119.99915 * 359.97438 * 12 10 7 14 14 N 1.34768 * 120.00075 * 179.97438 * 12 10 7 15 15 C 1.48119 * 127.03350 * 0.04459 * 14 12 10 16 16 C 1.54941 * 103.25815 * 140.67251 * 15 14 12 17 17 C 1.54618 * 102.83712 * 37.37456 * 16 15 14 18 18 C 1.53004 * 110.41470 * 97.08845 * 17 16 15 19 19 C 1.53004 * 110.32597 * 219.25886 * 17 16 15 20 20 N 1.46499 * 109.47198 * 295.62213 * 19 17 16 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47173 * 60.00435 * 25 23 21 27 27 H 1.48497 * 109.47172 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47132 * 300.00314 * 25 23 21 29 29 C 1.47483 * 127.03408 * 179.97438 * 14 12 10 30 30 C 1.38215 * 120.00215 * 180.16761 * 2 1 3 31 31 H 1.08996 * 109.47128 * 90.00084 * 1 2 3 32 32 H 1.09001 * 109.46725 * 209.99983 * 1 2 3 33 33 H 1.08996 * 109.47357 * 329.99811 * 1 2 3 34 34 H 1.08003 * 120.00480 * 0.02562 * 3 2 1 35 35 H 1.08006 * 119.99936 * 179.97438 * 4 3 2 36 36 H 1.07999 * 119.99852 * 179.97438 * 5 4 3 37 37 H 1.08997 * 117.49724 * 145.02083 * 9 7 6 38 38 H 1.08991 * 117.52195 * 359.97438 * 9 7 6 39 39 H 1.08999 * 110.65977 * 259.11104 * 15 14 12 40 40 H 1.08998 * 110.66305 * 22.22605 * 15 14 12 41 41 H 1.09004 * 110.73883 * 279.03985 * 16 15 14 42 42 H 1.08996 * 110.74255 * 155.71173 * 16 15 14 43 43 H 1.08995 * 109.47357 * 182.89106 * 18 17 16 44 44 H 1.09001 * 109.46782 * 302.89801 * 18 17 16 45 45 H 1.09003 * 109.46669 * 62.89281 * 18 17 16 46 46 H 1.09009 * 109.46730 * 175.62001 * 19 17 16 47 47 H 1.08998 * 109.46846 * 55.62545 * 19 17 16 48 48 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 49 49 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.91189 * 86.12833 * 29 14 12 51 51 H 1.08997 * 109.91688 * 324.84525 * 29 14 12 52 52 H 1.07995 * 120.00337 * 0.04508 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0002 6 6 3.5807 -1.1969 0.0013 7 6 4.3342 -2.5019 0.0022 8 1 3.8023 -3.3519 0.4296 9 6 5.8496 -2.4425 0.2050 10 6 5.2746 -2.7756 -1.1733 11 1 5.3488 -2.0117 -1.9472 12 6 5.3944 -4.1996 -1.6517 13 8 4.7586 -5.0776 -1.1077 14 7 6.2080 -4.4975 -2.6839 15 6 7.0508 -3.5556 -3.4561 16 6 8.3556 -4.3574 -3.6916 17 6 7.8377 -5.7954 -3.9254 18 6 7.7331 -6.0880 -5.4235 19 6 8.7627 -6.8098 -3.2499 20 7 10.0835 -6.7629 -3.8821 21 6 11.0816 -7.5924 -3.4450 22 1 10.8963 -8.2780 -2.6313 23 6 12.3313 -7.5521 -4.0478 24 7 12.5571 -6.7162 -5.0392 25 14 13.6930 -8.6830 -3.4511 26 1 13.2656 -10.0968 -3.6058 27 1 14.9202 -8.4460 -4.2528 28 1 13.9758 -8.4051 -2.0200 29 6 6.4423 -5.8283 -3.2749 30 6 2.1981 -1.1969 -0.0035 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1327 -0.0010 36 1 5.3517 0.0002 -0.0010 37 1 6.3145 -3.2534 0.7657 38 1 6.3019 -1.4598 0.3372 39 1 6.5770 -3.3049 -4.4052 40 1 7.2522 -2.6551 -2.8758 41 1 8.9978 -4.3167 -2.8118 42 1 8.8816 -3.9887 -4.5722 43 1 7.3188 -7.0854 -5.5709 44 1 7.0818 -5.3509 -5.8931 45 1 8.7244 -6.0362 -5.8738 46 1 8.3440 -7.8106 -3.3567 47 1 8.8575 -6.5666 -2.1916 48 1 10.2497 -6.1474 -4.6131 49 1 13.4305 -6.6878 -5.4601 50 1 5.6854 -6.0373 -4.0309 51 1 6.4136 -6.5906 -2.4963 52 1 1.6582 -2.1323 -0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724255633.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:05 Heat of formation + Delta-G solvation = 3.490309 kcal Electronic energy + Delta-G solvation = -29106.477977 eV Core-core repulsion = 25263.664511 eV Total energy + Delta-G solvation = -3842.813466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.57206 -40.55986 -39.45817 -37.40287 -36.47821 -34.36575 -33.37879 -32.17387 -31.70949 -30.54888 -28.20939 -27.71638 -27.47141 -25.39179 -24.55526 -23.98483 -23.79101 -22.92131 -20.75821 -20.29230 -19.79950 -19.17792 -18.43609 -17.51007 -17.23731 -16.81742 -16.45297 -16.05989 -15.93276 -15.74730 -15.36330 -15.10204 -14.97436 -14.84297 -14.61841 -14.36281 -14.12295 -14.02959 -13.78365 -13.48662 -13.21921 -13.16474 -13.07358 -12.99933 -12.91118 -12.84996 -12.74373 -12.57990 -12.22249 -12.19714 -12.10561 -11.87204 -11.68923 -11.56609 -11.50335 -11.44537 -11.38835 -10.96983 -10.92760 -9.77384 -9.64631 -9.41244 -8.98267 -7.94871 -5.22328 0.36761 0.49570 1.40918 1.47070 1.49120 1.55403 1.86111 2.55744 2.64475 3.06178 3.28034 3.38073 3.53149 3.64289 3.67718 3.78649 3.82411 3.94007 4.03281 4.08662 4.18546 4.22162 4.25947 4.28607 4.33986 4.41230 4.51909 4.54525 4.62380 4.67017 4.72839 4.77255 4.82291 4.82891 4.89411 4.90514 4.95091 5.00708 5.02875 5.05941 5.10274 5.17724 5.21112 5.25483 5.32562 5.38497 5.48851 5.52354 5.60185 5.69718 5.73126 6.13909 6.27735 6.49785 7.05915 7.35441 8.09642 8.37216 9.27871 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022752 B = 0.001878 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.366821 B =14904.772766 C =15162.735216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.132 4.132 4 C -0.116 4.116 5 C -0.131 4.131 6 C -0.058 4.058 7 C -0.085 4.085 8 H 0.104 0.896 9 C -0.130 4.130 10 C -0.171 4.171 11 H 0.147 0.853 12 C 0.554 3.446 13 O -0.589 6.589 14 N -0.614 5.614 15 C 0.106 3.894 16 C -0.116 4.116 17 C -0.071 4.071 18 C -0.125 4.125 19 C 0.167 3.833 20 N -0.733 5.733 21 C -0.249 4.249 22 H 0.067 0.933 23 C -0.068 4.068 24 N -0.963 5.963 25 Si 0.970 3.030 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.121 3.879 30 C -0.130 4.130 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.013 0.987 47 H 0.006 0.994 48 H 0.380 0.620 49 H 0.252 0.748 50 H 0.082 0.918 51 H 0.055 0.945 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.220 19.910 7.129 30.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.134 4.134 5 C -0.149 4.149 6 C -0.058 4.058 7 C -0.104 4.104 8 H 0.122 0.878 9 C -0.168 4.168 10 C -0.191 4.191 11 H 0.165 0.835 12 C 0.344 3.656 13 O -0.471 6.471 14 N -0.346 5.346 15 C -0.015 4.015 16 C -0.154 4.154 17 C -0.072 4.072 18 C -0.183 4.183 19 C 0.040 3.960 20 N -0.377 5.377 21 C -0.381 4.381 22 H 0.085 0.915 23 C -0.261 4.261 24 N -0.613 5.613 25 Si 0.799 3.201 26 H -0.207 1.207 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.002 4.002 30 C -0.148 4.148 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.112 0.888 38 H 0.155 0.845 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.031 0.969 47 H 0.024 0.976 48 H 0.214 0.786 49 H 0.061 0.939 50 H 0.100 0.900 51 H 0.074 0.926 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.545 19.335 7.583 30.653 hybrid contribution 1.141 -1.174 -0.029 1.637 sum -21.404 18.161 7.553 29.069 Atomic orbital electron populations 1.20836 0.89856 1.03488 1.02939 1.20188 0.97265 0.92912 0.99029 1.21363 0.94720 0.98032 1.00830 1.21435 0.94497 0.98584 0.98909 1.21271 1.00979 0.91603 1.01005 1.19113 0.93373 0.92856 1.00471 1.20970 0.92480 0.96754 1.00205 0.87778 1.23242 0.94634 1.04706 0.94168 1.22272 1.08520 0.93731 0.94619 0.83526 1.19838 0.77591 0.90311 0.77839 1.90670 1.47508 1.50865 1.58024 1.48798 1.43453 1.10270 1.32088 1.22794 0.89059 0.92800 0.96875 1.22700 0.96867 0.93247 1.02622 1.21507 0.93075 0.95994 0.96644 1.21737 1.01907 1.01813 0.92800 1.20774 0.85312 0.95781 0.94084 1.42432 1.07660 1.46152 1.41455 1.19536 0.91596 1.13902 1.13100 0.91490 1.25457 0.99899 1.01549 0.99196 1.69779 1.22990 1.41215 1.27346 0.85277 0.78743 0.78713 0.77394 1.20714 1.21802 1.20738 1.22015 0.95907 0.85162 0.97145 1.21022 0.93679 0.98274 1.01839 0.90600 0.91445 0.90233 0.84214 0.83749 0.84235 0.88790 0.84517 0.88361 0.87715 0.92459 0.89278 0.92832 0.90183 0.93374 0.96913 0.97591 0.78600 0.93911 0.89959 0.92622 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.24 0.71 -0.48 16 2 C -0.09 -1.41 5.88 -19.87 -0.12 -1.53 16 3 C -0.13 -1.71 9.70 22.27 0.22 -1.49 16 4 C -0.12 -1.46 10.05 22.27 0.22 -1.24 16 5 C -0.13 -1.88 9.30 22.27 0.21 -1.67 16 6 C -0.06 -1.04 5.61 -19.87 -0.11 -1.15 16 7 C -0.09 -1.71 5.56 -11.54 -0.06 -1.77 16 8 H 0.10 2.54 7.67 -2.39 -0.02 2.52 16 9 C -0.13 -2.25 9.56 30.60 0.29 -1.95 16 10 C -0.17 -3.40 4.89 -11.54 -0.06 -3.46 16 11 H 0.15 2.23 7.60 -2.39 -0.02 2.21 16 12 C 0.55 15.60 7.67 87.66 0.67 16.27 16 13 O -0.59 -21.50 16.60 -3.05 -0.05 -21.55 16 14 N -0.61 -16.02 3.29 -809.44 -2.66 -18.68 16 15 C 0.11 2.12 6.84 86.73 0.59 2.71 16 16 C -0.12 -3.17 5.74 31.81 0.18 -2.99 16 17 C -0.07 -2.19 0.67 -51.29 -0.03 -2.22 16 18 C -0.13 -3.60 8.03 71.98 0.58 -3.02 16 19 C 0.17 6.87 4.84 86.38 0.42 7.29 16 20 N -0.73 -36.65 5.13 -343.44 -1.76 -38.41 16 21 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 24 N -0.96 -57.60 13.06 21.65 0.28 -57.32 16 25 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 29 C 0.12 3.49 6.28 86.52 0.54 4.03 16 30 C -0.13 -2.36 9.39 22.27 0.21 -2.15 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 33 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 34 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.14 1.46 6.02 -2.91 -0.02 1.44 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.14 1.56 6.18 -2.39 -0.01 1.55 16 39 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 1.60 7.16 -2.39 -0.02 1.58 16 41 H 0.06 1.84 7.84 -2.38 -0.02 1.82 16 42 H 0.09 2.38 7.86 -2.39 -0.02 2.36 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.64 6.78 -2.39 -0.02 1.63 16 46 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 47 H 0.01 0.27 8.11 -2.39 -0.02 0.25 16 48 H 0.38 19.55 6.18 -92.71 -0.57 18.98 16 49 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 50 H 0.08 2.13 7.68 -2.39 -0.02 2.11 16 51 H 0.06 1.85 7.59 -2.39 -0.02 1.83 16 52 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -71.61 416.48 3.94 -67.67 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.33 Total: 31.51 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 5.77 Total: -11.44 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -4.14 Total: -114.41 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -71.61 3.94 -67.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724255633.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.161 kcal (2) G-P(sol) polarization free energy of solvation -71.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds