Wall clock time and date at job start Wed Apr 1 2020 02:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38255 * 119.99843 * 2 1 4 4 C 1.38215 * 119.99743 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00073 * 0.02853 * 4 3 2 6 6 C 1.38208 * 119.99971 * 359.76072 * 5 4 3 7 7 C 1.50698 * 120.00322 * 180.25632 * 6 5 4 8 8 H 1.08997 * 115.55328 * 154.54187 * 7 6 5 9 9 C 1.52999 * 117.49668 * 8.83463 * 7 6 5 10 10 C 1.53006 * 60.00187 * 252.51371 * 9 7 6 11 11 H 1.08987 * 117.51975 * 107.48414 * 10 9 7 12 12 C 1.50704 * 117.49631 * 252.51390 * 10 9 7 13 13 O 1.21281 * 120.00128 * 68.61933 * 12 10 9 14 14 N 1.34781 * 119.99769 * 248.62209 * 12 10 9 15 15 C 1.48110 * 127.03330 * 359.68117 * 14 12 10 16 16 C 1.54599 * 103.42019 * 219.28953 * 15 14 12 17 17 C 1.54618 * 102.91245 * 322.86933 * 16 15 14 18 18 C 1.53007 * 110.32549 * 262.80552 * 17 16 15 19 19 C 1.52995 * 110.41388 * 140.63849 * 17 16 15 20 20 N 1.46500 * 109.47375 * 64.32581 * 19 17 16 21 21 C 1.36944 * 120.00116 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99762 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99914 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00278 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00200 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47098 * 59.99590 * 25 23 21 27 27 H 1.48498 * 109.47569 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46589 * 300.00139 * 25 23 21 29 29 C 1.47486 * 127.03117 * 180.02562 * 14 12 10 30 30 C 1.38212 * 119.99857 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46531 * 269.97561 * 1 2 3 32 32 H 1.09005 * 109.47126 * 29.97193 * 1 2 3 33 33 H 1.08998 * 109.47249 * 149.97822 * 1 2 3 34 34 H 1.08005 * 120.00210 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.99700 * 180.02562 * 4 3 2 36 36 H 1.07999 * 120.00058 * 179.97438 * 5 4 3 37 37 H 1.09000 * 117.50038 * 359.97438 * 9 7 6 38 38 H 1.08997 * 117.49979 * 145.02221 * 9 7 6 39 39 H 1.09000 * 110.66433 * 337.77214 * 15 14 12 40 40 H 1.08996 * 110.66271 * 100.89190 * 15 14 12 41 41 H 1.09002 * 110.83382 * 204.44786 * 16 15 14 42 42 H 1.08998 * 110.57719 * 81.17426 * 16 15 14 43 43 H 1.09000 * 109.46890 * 175.62055 * 18 17 16 44 44 H 1.08992 * 109.47023 * 295.62459 * 18 17 16 45 45 H 1.09004 * 109.46806 * 55.62037 * 18 17 16 46 46 H 1.09000 * 109.47232 * 184.32860 * 19 17 16 47 47 H 1.09005 * 109.46947 * 304.32945 * 19 17 16 48 48 H 0.97004 * 119.99926 * 0.02562 * 20 19 17 49 49 H 0.96996 * 120.00084 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.91323 * 273.88012 * 29 14 12 51 51 H 1.09004 * 109.91029 * 34.95960 * 29 14 12 52 52 H 1.08002 * 119.99812 * 359.97106 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1969 0.0049 7 6 4.3341 -2.5020 0.0106 8 1 3.7999 -3.3514 0.4364 9 6 5.8486 -2.4425 0.2198 10 6 5.2795 -2.7771 -1.1605 11 1 5.3563 -2.0144 -1.9352 12 6 5.4013 -4.2017 -1.6366 13 8 4.7628 -5.0789 -1.0947 14 7 6.2198 -4.5010 -2.6648 15 6 7.0608 -3.5591 -3.4388 16 6 6.9343 -4.0750 -4.8906 17 6 6.9028 -5.6103 -4.7103 18 6 8.2965 -6.2005 -4.9350 19 6 5.8977 -6.2405 -5.6763 20 7 6.3401 -6.0184 -7.0551 21 6 5.5936 -6.4959 -8.0992 22 1 4.6789 -7.0366 -7.9061 23 6 6.0126 -6.2849 -9.4056 24 7 7.1272 -5.6254 -9.6409 25 14 4.9947 -6.9368 -10.8298 26 1 3.6386 -6.3334 -10.7860 27 1 5.6537 -6.5823 -12.1124 28 1 4.8830 -8.4138 -10.7229 29 6 6.4559 -5.8324 -3.2537 30 6 2.1981 -1.1970 -0.0005 31 1 -0.3632 -0.0004 1.0277 32 1 -0.3634 0.8903 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1327 0.0010 36 1 5.3517 0.0000 0.0005 37 1 6.3000 -1.4594 0.3528 38 1 6.3110 -3.2528 0.7835 39 1 6.6750 -2.5429 -3.3575 40 1 8.0975 -3.6058 -3.1052 41 1 7.7966 -3.7738 -5.4856 42 1 6.0086 -3.7205 -5.3438 43 1 8.2754 -7.2706 -4.7288 44 1 8.5984 -6.0356 -5.9692 45 1 9.0084 -5.7156 -4.2669 46 1 5.8314 -7.3114 -5.4841 47 1 4.9186 -5.7840 -5.5309 48 1 7.1619 -5.5330 -7.2285 49 1 7.4201 -5.4782 -10.5538 50 1 7.2393 -6.3497 -2.6999 51 1 5.5364 -6.4174 -3.2295 52 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724255634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:11 Heat of formation + Delta-G solvation = 20.223019 kcal Electronic energy + Delta-G solvation = -29199.616803 eV Core-core repulsion = 25357.528921 eV Total energy + Delta-G solvation = -3842.087882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.58273 -39.72434 -38.36587 -36.49507 -34.81101 -32.83257 -32.65416 -31.11514 -30.27681 -29.40903 -27.27882 -26.89602 -25.79793 -24.14745 -23.71501 -22.79442 -22.40451 -22.17424 -20.04545 -19.12785 -18.63588 -17.61427 -17.13341 -16.68355 -16.10499 -15.77257 -15.31732 -15.18535 -14.65803 -14.33399 -14.07706 -14.05371 -13.99090 -13.67805 -13.43961 -13.27053 -13.13231 -12.79406 -12.59583 -12.53610 -12.49052 -12.26598 -12.14342 -12.03134 -11.69815 -11.56503 -11.36564 -11.20689 -11.01255 -10.92489 -10.79913 -10.70118 -10.59427 -10.30372 -10.26835 -9.94743 -9.83668 -9.64194 -9.00639 -8.86653 -8.77319 -8.63663 -6.91171 -5.76711 -3.04518 1.01559 1.12608 2.45727 2.90276 3.35866 3.44700 3.48999 3.50053 3.79520 4.17086 4.40133 4.53236 4.55557 4.59220 4.64572 4.71695 4.77382 4.83533 4.89651 4.93157 5.06774 5.12199 5.16664 5.30134 5.31847 5.35290 5.43797 5.44097 5.50734 5.53993 5.60674 5.65128 5.74302 5.76305 5.82229 5.88469 5.89081 5.94813 6.04537 6.08935 6.20370 6.24509 6.32074 6.34038 6.37844 6.41914 6.52142 6.67734 6.74213 6.79056 6.87349 7.57043 7.70734 8.16674 8.42850 9.54269 10.11485 10.47048 11.46214 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012128 B = 0.002205 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.118308 B =12693.424213 C =13911.447354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.047 4.047 7 C -0.084 4.084 8 H 0.127 0.873 9 C -0.144 4.144 10 C -0.171 4.171 11 H 0.125 0.875 12 C 0.560 3.440 13 O -0.545 6.545 14 N -0.612 5.612 15 C 0.099 3.901 16 C -0.120 4.120 17 C -0.079 4.079 18 C -0.132 4.132 19 C 0.167 3.833 20 N -0.728 5.728 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.117 3.883 30 C -0.109 4.109 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.021 0.979 47 H 0.019 0.981 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.066 0.934 51 H 0.077 0.923 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 13.789 23.051 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.048 4.048 7 C -0.102 4.102 8 H 0.145 0.855 9 C -0.181 4.181 10 C -0.192 4.192 11 H 0.143 0.857 12 C 0.349 3.651 13 O -0.423 6.423 14 N -0.345 5.345 15 C -0.024 4.024 16 C -0.158 4.158 17 C -0.080 4.080 18 C -0.190 4.190 19 C 0.039 3.961 20 N -0.373 5.373 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.006 4.006 30 C -0.127 4.127 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.085 0.915 51 H 0.096 0.904 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.618 13.248 23.310 27.055 hybrid contribution -0.191 -0.154 -1.128 1.154 sum -3.809 13.094 22.182 26.039 Atomic orbital electron populations 1.20810 0.91115 1.02976 1.02338 1.19923 0.96160 0.93040 0.99284 1.21043 0.94324 0.97484 1.01482 1.21098 0.94292 0.97868 0.99896 1.21039 0.99988 0.91914 1.01420 1.19102 0.93324 0.92878 0.99449 1.21081 0.91795 0.96872 1.00488 0.85546 1.23123 0.95560 1.03599 0.95805 1.22300 1.07453 0.95855 0.93598 0.85695 1.19159 0.78085 0.89116 0.78709 1.90692 1.45524 1.49330 1.56793 1.48707 1.43037 1.10415 1.32355 1.22590 0.94690 0.93387 0.91700 1.22725 1.03931 0.94573 0.94544 1.21644 0.97325 0.95729 0.93324 1.21815 0.94151 1.00283 1.02744 1.20699 0.93776 0.96517 0.85101 1.42347 1.28242 1.67622 0.99107 1.19187 1.03555 1.28416 0.85733 0.91346 1.24707 0.97769 1.01233 0.97238 1.69639 1.23151 1.46065 1.19518 0.86272 0.79365 0.78551 0.82037 1.21325 1.21713 1.21304 1.22157 1.01427 0.84282 0.92725 1.20902 0.93347 0.97859 1.00598 0.91146 0.91508 0.91347 0.86179 0.86000 0.85901 0.87393 0.87740 0.90433 0.90912 0.89623 0.90169 0.92659 0.90801 0.93452 0.96164 0.96281 0.78069 0.93512 0.91547 0.90407 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.08 -0.75 5.88 -104.62 -0.62 -1.36 16 3 C -0.13 -1.03 9.70 -39.58 -0.38 -1.42 16 4 C -0.11 -0.92 10.05 -39.58 -0.40 -1.31 16 5 C -0.13 -1.08 9.29 -39.59 -0.37 -1.45 16 6 C -0.05 -0.47 5.61 -104.63 -0.59 -1.06 16 7 C -0.08 -0.86 5.55 -91.77 -0.51 -1.37 16 8 H 0.13 1.45 7.67 -51.93 -0.40 1.05 16 9 C -0.14 -1.22 9.56 -26.73 -0.26 -1.48 16 10 C -0.17 -1.84 5.19 -91.76 -0.48 -2.32 16 11 H 0.13 1.22 7.00 -51.94 -0.36 0.86 16 12 C 0.56 8.04 7.67 -10.98 -0.08 7.95 16 13 O -0.55 -9.67 16.59 5.56 0.09 -9.58 16 14 N -0.61 -8.38 3.29 -170.00 -0.56 -8.94 16 15 C 0.10 1.13 6.93 -2.32 -0.02 1.11 16 16 C -0.12 -1.71 5.72 -25.04 -0.14 -1.86 16 17 C -0.08 -1.24 0.67 -153.15 -0.10 -1.34 16 18 C -0.13 -1.97 8.04 37.16 0.30 -1.67 16 19 C 0.17 3.36 4.85 -4.04 -0.02 3.34 16 20 N -0.73 -17.95 5.12 -59.91 -0.31 -18.25 16 21 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 25 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 C 0.12 1.71 6.28 -2.99 -0.02 1.69 16 30 C -0.11 -1.08 9.39 -39.58 -0.37 -1.45 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 35 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.12 0.84 6.03 -52.49 -0.32 0.52 16 37 H 0.11 0.69 6.18 -51.93 -0.32 0.37 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.75 6.71 -51.93 -0.35 0.40 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 1.21 7.85 -51.93 -0.41 0.80 16 42 H 0.08 1.32 7.85 -51.93 -0.41 0.91 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.28 6.74 -51.93 -0.35 0.93 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 48 H 0.38 9.74 6.18 -40.82 -0.25 9.49 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 51 H 0.08 1.26 7.60 -51.93 -0.39 0.87 16 52 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 415.79 15.07 6.27 6.27 Total: -1.00 -32.71 415.79 -11.32 -44.03 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.57 Total: 7.81 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.94 Total: -11.67 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.14 Total: -54.29 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.71 -11.32 -44.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724255634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.250 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds