Wall clock time and date at job start Wed Apr 1 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38255 * 119.99843 * 2 1 4 4 C 1.38215 * 119.99743 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00073 * 0.02853 * 4 3 2 6 6 C 1.38208 * 119.99971 * 359.76072 * 5 4 3 7 7 C 1.50698 * 120.00322 * 180.25632 * 6 5 4 8 8 H 1.08997 * 115.55328 * 154.54187 * 7 6 5 9 9 C 1.52999 * 117.49668 * 8.83463 * 7 6 5 10 10 C 1.53006 * 60.00187 * 252.51371 * 9 7 6 11 11 H 1.08987 * 117.51975 * 107.48414 * 10 9 7 12 12 C 1.50704 * 117.49631 * 252.51390 * 10 9 7 13 13 O 1.21281 * 120.00128 * 68.61933 * 12 10 9 14 14 N 1.34781 * 119.99769 * 248.62209 * 12 10 9 15 15 C 1.48110 * 127.03330 * 359.68117 * 14 12 10 16 16 C 1.54599 * 103.42019 * 219.28953 * 15 14 12 17 17 C 1.54618 * 102.91245 * 322.86933 * 16 15 14 18 18 C 1.53007 * 110.32549 * 262.80552 * 17 16 15 19 19 C 1.52995 * 110.41388 * 140.63849 * 17 16 15 20 20 N 1.46500 * 109.47375 * 64.32581 * 19 17 16 21 21 C 1.36944 * 120.00116 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99762 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99914 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00278 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00200 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47098 * 59.99590 * 25 23 21 27 27 H 1.48498 * 109.47569 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46589 * 300.00139 * 25 23 21 29 29 C 1.47486 * 127.03117 * 180.02562 * 14 12 10 30 30 C 1.38212 * 119.99857 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46531 * 269.97561 * 1 2 3 32 32 H 1.09005 * 109.47126 * 29.97193 * 1 2 3 33 33 H 1.08998 * 109.47249 * 149.97822 * 1 2 3 34 34 H 1.08005 * 120.00210 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.99700 * 180.02562 * 4 3 2 36 36 H 1.07999 * 120.00058 * 179.97438 * 5 4 3 37 37 H 1.09000 * 117.50038 * 359.97438 * 9 7 6 38 38 H 1.08997 * 117.49979 * 145.02221 * 9 7 6 39 39 H 1.09000 * 110.66433 * 337.77214 * 15 14 12 40 40 H 1.08996 * 110.66271 * 100.89190 * 15 14 12 41 41 H 1.09002 * 110.83382 * 204.44786 * 16 15 14 42 42 H 1.08998 * 110.57719 * 81.17426 * 16 15 14 43 43 H 1.09000 * 109.46890 * 175.62055 * 18 17 16 44 44 H 1.08992 * 109.47023 * 295.62459 * 18 17 16 45 45 H 1.09004 * 109.46806 * 55.62037 * 18 17 16 46 46 H 1.09000 * 109.47232 * 184.32860 * 19 17 16 47 47 H 1.09005 * 109.46947 * 304.32945 * 19 17 16 48 48 H 0.97004 * 119.99926 * 0.02562 * 20 19 17 49 49 H 0.96996 * 120.00084 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.91323 * 273.88012 * 29 14 12 51 51 H 1.09004 * 109.91029 * 34.95960 * 29 14 12 52 52 H 1.08002 * 119.99812 * 359.97106 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1969 0.0049 7 6 4.3341 -2.5020 0.0106 8 1 3.7999 -3.3514 0.4364 9 6 5.8486 -2.4425 0.2198 10 6 5.2795 -2.7771 -1.1605 11 1 5.3563 -2.0144 -1.9352 12 6 5.4013 -4.2017 -1.6366 13 8 4.7628 -5.0789 -1.0947 14 7 6.2198 -4.5010 -2.6648 15 6 7.0608 -3.5591 -3.4388 16 6 6.9343 -4.0750 -4.8906 17 6 6.9028 -5.6103 -4.7103 18 6 8.2965 -6.2005 -4.9350 19 6 5.8977 -6.2405 -5.6763 20 7 6.3401 -6.0184 -7.0551 21 6 5.5936 -6.4959 -8.0992 22 1 4.6789 -7.0366 -7.9061 23 6 6.0126 -6.2849 -9.4056 24 7 7.1272 -5.6254 -9.6409 25 14 4.9947 -6.9368 -10.8298 26 1 3.6386 -6.3334 -10.7860 27 1 5.6537 -6.5823 -12.1124 28 1 4.8830 -8.4138 -10.7229 29 6 6.4559 -5.8324 -3.2537 30 6 2.1981 -1.1970 -0.0005 31 1 -0.3632 -0.0004 1.0277 32 1 -0.3634 0.8903 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1327 0.0010 36 1 5.3517 0.0000 0.0005 37 1 6.3000 -1.4594 0.3528 38 1 6.3110 -3.2528 0.7835 39 1 6.6750 -2.5429 -3.3575 40 1 8.0975 -3.6058 -3.1052 41 1 7.7966 -3.7738 -5.4856 42 1 6.0086 -3.7205 -5.3438 43 1 8.2754 -7.2706 -4.7288 44 1 8.5984 -6.0356 -5.9692 45 1 9.0084 -5.7156 -4.2669 46 1 5.8314 -7.3114 -5.4841 47 1 4.9186 -5.7840 -5.5309 48 1 7.1619 -5.5330 -7.2285 49 1 7.4201 -5.4782 -10.5538 50 1 7.2393 -6.3497 -2.6999 51 1 5.5364 -6.4174 -3.2295 52 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724255634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:09 Heat of formation + Delta-G solvation = 3.358389 kcal Electronic energy + Delta-G solvation = -29200.348108 eV Core-core repulsion = 25357.528921 eV Total energy + Delta-G solvation = -3842.819187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.57300 -40.56598 -39.46505 -37.39704 -36.48901 -34.37059 -33.38900 -32.18375 -31.71458 -30.57959 -28.20436 -27.73018 -27.48379 -25.39953 -24.56055 -23.99187 -23.76200 -22.93186 -20.76499 -20.30022 -19.80791 -19.19118 -18.46770 -17.49299 -17.18839 -16.86531 -16.49689 -16.05892 -15.95524 -15.67448 -15.40986 -15.11388 -14.96600 -14.83345 -14.64585 -14.33006 -14.13786 -14.01622 -13.88468 -13.48929 -13.22114 -13.16655 -13.07413 -13.02102 -12.88790 -12.82536 -12.76130 -12.58621 -12.22981 -12.20534 -12.10916 -11.86243 -11.69248 -11.57851 -11.53372 -11.41313 -11.39346 -10.96601 -10.93547 -9.77219 -9.65471 -9.41493 -8.99557 -7.95938 -5.23580 0.36227 0.48622 1.42292 1.46130 1.48344 1.54616 1.87067 2.54810 2.64088 3.04568 3.29608 3.37036 3.53190 3.63866 3.66986 3.79829 3.81690 3.93541 4.04498 4.07567 4.17595 4.21869 4.24908 4.28502 4.33919 4.41084 4.50062 4.53511 4.62845 4.66209 4.73842 4.77270 4.80502 4.83553 4.88837 4.90634 4.95032 4.99512 5.02662 5.07080 5.09562 5.17069 5.20727 5.24978 5.30986 5.38215 5.47623 5.52465 5.59059 5.68499 5.72225 6.13240 6.26818 6.49971 7.06511 7.34359 8.08364 8.36067 9.26896 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012128 B = 0.002205 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.118308 B =12693.424213 C =13911.447354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.116 4.116 5 C -0.129 4.129 6 C -0.059 4.059 7 C -0.092 4.092 8 H 0.103 0.897 9 C -0.117 4.117 10 C -0.176 4.176 11 H 0.140 0.860 12 C 0.554 3.446 13 O -0.590 6.590 14 N -0.614 5.614 15 C 0.108 3.892 16 C -0.119 4.119 17 C -0.071 4.071 18 C -0.125 4.125 19 C 0.167 3.833 20 N -0.734 5.734 21 C -0.249 4.249 22 H 0.066 0.934 23 C -0.069 4.069 24 N -0.964 5.964 25 Si 0.970 3.030 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.121 3.879 30 C -0.134 4.134 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.014 0.986 47 H 0.004 0.996 48 H 0.380 0.620 49 H 0.253 0.747 50 H 0.085 0.915 51 H 0.054 0.946 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 15.901 24.151 28.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.059 4.059 7 C -0.111 4.111 8 H 0.121 0.879 9 C -0.154 4.154 10 C -0.197 4.197 11 H 0.158 0.842 12 C 0.344 3.656 13 O -0.471 6.471 14 N -0.346 5.346 15 C -0.013 4.013 16 C -0.157 4.157 17 C -0.072 4.072 18 C -0.182 4.182 19 C 0.040 3.960 20 N -0.378 5.378 21 C -0.381 4.381 22 H 0.084 0.916 23 C -0.261 4.261 24 N -0.614 5.614 25 Si 0.799 3.201 26 H -0.208 1.208 27 H -0.217 1.217 28 H -0.206 1.206 29 C -0.002 4.002 30 C -0.152 4.152 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.157 0.843 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.032 0.968 47 H 0.021 0.979 48 H 0.214 0.786 49 H 0.061 0.939 50 H 0.103 0.897 51 H 0.072 0.928 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.532 15.365 24.427 28.968 hybrid contribution -0.596 -0.836 -1.432 1.763 sum -3.128 14.529 22.994 27.379 Atomic orbital electron populations 1.20841 0.90031 1.03303 1.03009 1.20191 0.97215 0.93036 0.99139 1.21365 0.94888 0.97914 1.00916 1.21456 0.94388 0.98746 0.98825 1.21289 1.01119 0.91406 1.00881 1.19155 0.93275 0.93182 1.00331 1.20987 0.92987 0.96579 1.00502 0.87866 1.23263 0.93929 1.04979 0.93186 1.22262 1.08999 0.93602 0.94811 0.84191 1.19829 0.77163 0.90268 0.78307 1.90669 1.47158 1.50968 1.58324 1.48809 1.43145 1.10394 1.32230 1.22721 0.96019 0.93790 0.88809 1.22664 1.02776 0.93427 0.96829 1.21500 0.96484 0.96553 0.92653 1.21740 0.94022 1.00621 1.01849 1.20773 0.94540 0.96362 0.84324 1.42443 1.27800 1.67272 1.00236 1.19525 1.03679 1.27983 0.86925 0.91556 1.25465 0.99062 1.02045 0.99564 1.69776 1.24552 1.47363 1.19696 0.85275 0.77950 0.78103 0.78799 1.20762 1.21736 1.20640 1.22016 1.00849 0.85110 0.92249 1.21034 0.93954 0.98155 1.02024 0.90272 0.90366 0.91820 0.84274 0.83547 0.83739 0.84313 0.87855 0.88025 0.87925 0.89143 0.92860 0.92730 0.93443 0.90006 0.96808 0.97856 0.78572 0.93862 0.89682 0.92789 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 10.01 71.24 0.71 -0.78 16 2 C -0.10 -1.65 5.88 -19.86 -0.12 -1.76 16 3 C -0.13 -1.94 9.70 22.27 0.22 -1.73 16 4 C -0.12 -1.56 10.05 22.27 0.22 -1.33 16 5 C -0.13 -1.90 9.29 22.27 0.21 -1.69 16 6 C -0.06 -1.12 5.61 -19.87 -0.11 -1.23 16 7 C -0.09 -1.84 5.55 -11.54 -0.06 -1.90 16 8 H 0.10 2.52 7.67 -2.39 -0.02 2.50 16 9 C -0.12 -1.69 9.56 30.60 0.29 -1.39 16 10 C -0.18 -3.50 5.19 -11.53 -0.06 -3.56 16 11 H 0.14 2.35 7.00 -2.39 -0.02 2.33 16 12 C 0.55 15.60 7.67 87.66 0.67 16.27 16 13 O -0.59 -21.52 16.59 -3.03 -0.05 -21.57 16 14 N -0.61 -16.01 3.29 -810.14 -2.67 -18.68 16 15 C 0.11 2.15 6.93 86.61 0.60 2.75 16 16 C -0.12 -3.29 5.72 31.69 0.18 -3.11 16 17 C -0.07 -2.19 0.67 -51.30 -0.03 -2.23 16 18 C -0.12 -3.57 8.04 71.98 0.58 -2.99 16 19 C 0.17 6.94 4.85 86.38 0.42 7.36 16 20 N -0.73 -37.04 5.12 -343.46 -1.76 -38.80 16 21 C -0.25 -14.13 9.99 84.03 0.84 -13.30 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 24 N -0.96 -57.97 13.06 21.65 0.28 -57.68 16 25 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 28 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 29 C 0.12 3.48 6.28 86.52 0.54 4.03 16 30 C -0.13 -2.69 9.39 22.27 0.21 -2.48 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.81 8.09 -2.38 -0.02 0.79 16 33 H 0.06 0.86 8.09 -2.39 -0.02 0.84 16 34 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.15 1.38 6.03 -2.91 -0.02 1.36 16 37 H 0.14 1.16 6.18 -2.39 -0.01 1.14 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.59 6.71 -2.39 -0.02 1.57 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 2.43 7.85 -2.39 -0.02 2.41 16 42 H 0.05 1.76 7.85 -2.39 -0.02 1.74 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.62 6.74 -2.39 -0.02 1.61 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 46 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.00 0.16 8.11 -2.38 -0.02 0.14 16 48 H 0.38 19.71 6.18 -92.71 -0.57 19.14 16 49 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 50 H 0.09 2.15 7.68 -2.39 -0.02 2.13 16 51 H 0.05 1.81 7.60 -2.38 -0.02 1.79 16 52 H 0.11 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -72.85 415.79 3.95 -68.91 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.34 Total: 31.86 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 5.78 Total: -12.54 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -4.14 Total: -115.16 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -72.85 3.95 -68.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724255634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.266 kcal (2) G-P(sol) polarization free energy of solvation -72.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds