Wall clock time and date at job start Wed Apr 1 2020 02:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.64100 * 2 1 4 4 N 1.46503 * 109.47208 * 300.70117 * 3 2 1 5 5 C 1.36932 * 120.00173 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00046 * 0.02562 * 5 4 3 7 7 C 1.38815 * 120.00092 * 179.97438 * 5 4 3 8 8 N 1.31622 * 120.00297 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99898 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46808 * 89.99810 * 9 7 5 11 11 H 1.48493 * 109.47440 * 210.00017 * 9 7 5 12 12 H 1.48493 * 109.47115 * 330.00423 * 9 7 5 13 13 C 1.55148 * 110.72452 * 236.66380 * 2 1 3 14 14 C 1.54911 * 101.58152 * 277.13981 * 13 2 1 15 15 N 1.47426 * 104.82821 * 322.98560 * 14 13 2 16 16 C 1.34779 * 125.64473 * 204.16046 * 15 14 13 17 17 O 1.21282 * 119.99719 * 174.88306 * 16 15 14 18 18 C 1.50697 * 120.00360 * 354.88858 * 16 15 14 19 19 C 1.53002 * 110.26835 * 181.80117 * 18 16 15 20 20 C 1.54345 * 110.30288 * 303.88124 * 18 16 15 21 21 C 1.54491 * 102.32257 * 145.20705 * 20 18 16 22 22 C 1.51372 * 105.22044 * 333.76793 * 21 20 18 23 23 C 1.38493 * 130.38986 * 197.12218 * 22 21 20 24 24 C 1.38108 * 120.21138 * 179.97438 * 23 22 21 25 25 C 1.38261 * 119.93404 * 0.02562 * 24 23 22 26 26 C 1.38106 * 119.93445 * 0.02562 * 25 24 23 27 27 C 1.38220 * 109.75329 * 17.11923 * 22 21 20 28 28 C 1.47017 * 108.70331 * 24.13253 * 15 14 13 29 29 H 1.08998 * 109.47039 * 296.86109 * 1 2 3 30 30 H 1.08998 * 109.46710 * 176.85826 * 1 2 3 31 31 H 1.08996 * 109.47173 * 56.85914 * 1 2 3 32 32 H 1.09000 * 109.47292 * 60.70058 * 3 2 1 33 33 H 1.09006 * 109.47663 * 180.69835 * 3 2 1 34 34 H 0.96999 * 119.99601 * 359.97438 * 4 3 2 35 35 H 0.96997 * 119.99706 * 180.02562 * 8 7 5 36 36 H 1.09002 * 111.00796 * 35.21133 * 13 2 1 37 37 H 1.09005 * 111.00669 * 159.06432 * 13 2 1 38 38 H 1.09008 * 110.36694 * 204.15147 * 14 13 2 39 39 H 1.08999 * 110.36869 * 81.82487 * 14 13 2 40 40 H 1.09003 * 109.46757 * 60.16360 * 19 18 16 41 41 H 1.09000 * 109.46733 * 180.15975 * 19 18 16 42 42 H 1.08997 * 109.47342 * 300.15990 * 19 18 16 43 43 H 1.09000 * 110.82071 * 263.49252 * 20 18 16 44 44 H 1.08990 * 110.82399 * 27.04467 * 20 18 16 45 45 H 1.09000 * 110.33663 * 214.80068 * 21 20 18 46 46 H 1.08997 * 110.30984 * 92.72207 * 21 20 18 47 47 H 1.07988 * 119.89689 * 0.02562 * 23 22 21 48 48 H 1.07998 * 120.03097 * 179.97438 * 24 23 22 49 49 H 1.08000 * 120.03083 * 180.02562 * 25 24 23 50 50 H 1.07995 * 119.88776 * 180.02562 * 26 25 24 51 51 H 1.09006 * 109.87915 * 239.52031 * 28 15 14 52 52 H 1.09004 * 109.88317 * 118.35998 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 7 1.5816 2.1374 -1.1876 5 6 1.9362 3.4424 -1.4025 6 1 2.5758 3.9515 -0.6967 7 6 1.4744 4.1108 -2.5281 8 7 1.8156 5.3651 -2.7350 9 14 0.3698 3.2297 -3.7501 10 1 -1.0504 3.4196 -3.3598 11 1 0.5890 3.7888 -5.1082 12 1 0.6926 1.7803 -3.7534 13 6 2.0790 -0.7974 -1.2123 14 6 2.0127 -2.2520 -0.6836 15 7 2.3717 -2.1517 0.7428 16 6 2.8863 -3.1447 1.4949 17 8 3.2314 -2.9243 2.6365 18 6 3.0330 -4.5289 0.9174 19 6 3.5951 -5.4858 1.9706 20 6 1.6716 -5.0407 0.4007 21 6 2.0796 -5.8716 -0.8362 22 6 3.3865 -5.2694 -1.3060 23 6 4.0442 -5.3873 -2.5191 24 6 5.2447 -4.7363 -2.7249 25 6 5.7927 -3.9646 -1.7170 26 6 5.1388 -3.8468 -0.5063 27 6 3.9343 -4.4979 -0.2984 28 6 2.0760 -0.7890 1.2087 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 -1.0261 -0.0563 31 1 -0.3633 0.5618 -0.8605 32 1 1.7268 1.9491 0.8962 33 1 3.1591 1.4097 -0.0125 34 1 1.0074 1.6801 -1.8217 35 1 1.4926 5.8322 -3.5213 36 1 1.4397 -0.6698 -2.0859 37 1 3.1062 -0.5097 -1.4365 38 1 2.7295 -2.8808 -1.2119 39 1 1.0040 -2.6501 -0.7938 40 1 2.9161 -5.5280 2.8224 41 1 3.6984 -6.4813 1.5388 42 1 4.5709 -5.1300 2.3010 43 1 1.1848 -5.6681 1.1474 44 1 1.0287 -4.2089 0.1133 45 1 1.3224 -5.7871 -1.6158 46 1 2.2222 -6.9163 -0.5600 47 1 3.6166 -5.9895 -3.3069 48 1 5.7553 -4.8305 -3.6718 49 1 6.7312 -3.4545 -1.8764 50 1 5.5673 -3.2435 0.2803 51 1 2.9869 -0.3179 1.5782 52 1 1.3263 -0.8220 1.9992 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724274714.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:22 Heat of formation + Delta-G solvation = 6.196492 kcal Electronic energy + Delta-G solvation = -31431.355412 eV Core-core repulsion = 27588.659295 eV Total energy + Delta-G solvation = -3842.696117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = -0.26 seconds Orbital eigenvalues (eV) -41.52964 -39.57240 -38.19126 -36.19504 -34.98954 -32.71061 -32.22345 -30.69939 -30.02095 -29.52471 -29.02846 -27.18226 -26.17923 -24.83611 -23.38628 -22.96262 -22.13999 -21.29068 -21.21217 -19.23215 -18.78794 -17.70917 -17.09794 -16.23470 -16.00360 -15.84006 -15.56965 -15.18831 -14.64819 -14.45985 -14.16319 -14.08211 -13.93977 -13.76570 -13.38755 -13.25212 -13.04551 -12.87189 -12.74761 -12.50849 -12.44814 -12.40917 -12.14845 -12.00735 -11.84850 -11.76699 -11.58528 -11.41001 -11.37321 -11.05442 -10.98477 -10.90529 -10.63392 -10.41981 -10.37453 -10.06554 -9.81875 -9.58302 -9.05528 -8.91379 -8.75712 -8.62057 -7.23969 -5.77776 -3.13070 1.05354 1.13388 2.52329 2.91897 3.33598 3.36022 3.42707 3.47607 3.97294 4.16995 4.29053 4.53238 4.57018 4.62572 4.66162 4.72662 4.80352 4.88680 4.92554 4.95987 5.10994 5.21423 5.24659 5.29441 5.30708 5.38386 5.45603 5.48423 5.53360 5.56160 5.60119 5.66667 5.68588 5.69988 5.73467 5.81275 5.87316 5.89882 5.93745 5.98204 6.10550 6.18961 6.20049 6.28775 6.29109 6.31660 6.36577 6.45225 6.63620 6.71564 6.71728 7.49252 7.98739 8.10602 8.41236 9.20267 9.92259 10.12427 11.40840 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.003285 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.564056 B = 8520.763081 C = 9288.277653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 C 0.174 3.826 4 N -0.751 5.751 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.118 4.118 14 C 0.092 3.908 15 N -0.607 5.607 16 C 0.539 3.461 17 O -0.541 6.541 18 C -0.035 4.035 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.079 4.079 22 C -0.092 4.092 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.096 4.096 27 C -0.084 4.084 28 C 0.120 3.880 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.121 0.879 48 H 0.125 0.875 49 H 0.126 0.874 50 H 0.118 0.882 51 H 0.072 0.928 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -27.738 2.944 27.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.083 4.083 3 C 0.046 3.954 4 N -0.398 5.398 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.583 5.583 9 Si 0.712 3.288 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.156 4.156 14 C -0.030 4.030 15 N -0.340 5.340 16 C 0.327 3.673 17 O -0.418 6.418 18 C -0.038 4.038 19 C -0.176 4.176 20 C -0.155 4.155 21 C -0.116 4.116 22 C -0.092 4.092 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.134 4.134 26 C -0.114 4.114 27 C -0.084 4.084 28 C -0.003 4.003 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.144 0.856 50 H 0.136 0.864 51 H 0.090 0.910 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.993 -27.445 3.650 27.758 hybrid contribution -0.702 -0.325 -1.099 1.344 sum 1.290 -27.770 2.551 27.917 Atomic orbital electron populations 1.21773 0.93496 1.00839 1.02920 1.21851 0.96294 0.96365 0.93786 1.20564 0.96341 0.87654 0.90812 1.42668 1.60614 1.11841 1.24634 1.19062 1.25547 0.86199 1.06416 0.89222 1.24657 1.00430 0.95832 0.98189 1.69700 1.49363 1.09751 1.29436 0.86584 0.81320 0.79094 0.81754 1.21059 1.21719 1.20369 1.22840 1.02796 0.92304 0.97704 1.22669 1.00371 0.98906 0.81087 1.48394 1.62626 1.11538 1.11473 1.20015 0.76744 0.85326 0.85217 1.90694 1.49454 1.83259 1.18379 1.20314 0.95671 0.93247 0.94580 1.21583 1.01943 0.97264 0.96826 1.22604 0.94928 1.00408 0.97513 1.21065 0.93915 0.99418 0.97230 1.20527 0.96875 0.98024 0.93801 1.20604 0.95392 1.00422 0.96156 1.21090 0.95698 0.97254 0.99161 1.21069 1.00147 0.99052 0.93091 1.20670 0.94136 0.98937 0.97698 1.20112 0.95232 0.98649 0.94404 1.22018 1.00602 0.81153 0.96535 0.92159 0.93272 0.91701 0.95134 0.95293 0.80569 0.93066 0.89888 0.90061 0.89859 0.91512 0.91446 0.91850 0.91664 0.89630 0.89746 0.90162 0.89870 0.86092 0.85731 0.85648 0.86355 0.91009 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.29 37.16 0.31 -1.53 16 2 C -0.08 -1.21 0.61 -152.68 -0.09 -1.30 16 3 C 0.17 3.28 5.07 -4.04 -0.02 3.26 16 4 N -0.75 -17.27 4.94 -59.90 -0.30 -17.56 16 5 C -0.24 -6.79 10.47 -15.06 -0.16 -6.94 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 9 Si 0.88 21.70 27.73 -169.99 -4.71 16.98 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 13 C -0.12 -1.64 5.60 -24.59 -0.14 -1.78 16 14 C 0.09 1.07 4.96 -2.53 -0.01 1.06 16 15 N -0.61 -7.94 3.22 -170.51 -0.55 -8.49 16 16 C 0.54 7.36 6.47 -10.99 -0.07 7.29 16 17 O -0.54 -9.19 16.40 5.56 0.09 -9.10 16 18 C -0.04 -0.36 0.66 -155.78 -0.10 -0.47 16 19 C -0.12 -1.15 7.77 37.16 0.29 -0.86 16 20 C -0.12 -0.95 5.64 -25.24 -0.14 -1.10 16 21 C -0.08 -0.55 6.77 -26.77 -0.18 -0.73 16 22 C -0.09 -0.82 5.35 -104.20 -0.56 -1.38 16 23 C -0.11 -0.90 10.04 -39.53 -0.40 -1.30 16 24 C -0.11 -0.98 10.05 -39.62 -0.40 -1.38 16 25 C -0.12 -1.10 10.05 -39.62 -0.40 -1.50 16 26 C -0.10 -1.05 9.63 -39.54 -0.38 -1.43 16 27 C -0.08 -0.86 2.72 -104.20 -0.28 -1.15 16 28 C 0.12 1.69 6.05 -3.07 -0.02 1.67 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.58 7.41 -51.93 -0.38 0.19 16 31 H 0.06 1.00 6.84 -51.93 -0.36 0.64 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.36 8.01 4.15 -40.82 -0.17 7.84 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 37 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 38 H 0.08 0.95 4.79 -51.92 -0.25 0.70 16 39 H 0.07 0.69 6.29 -51.93 -0.33 0.36 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.71 8.10 -51.93 -0.42 0.28 16 43 H 0.09 0.59 7.90 -51.93 -0.41 0.18 16 44 H 0.08 0.73 5.16 -51.93 -0.27 0.46 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 50 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 51 H 0.07 1.09 7.82 -51.93 -0.41 0.68 16 52 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -33.00 396.68 -10.04 -43.04 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.47 Total: 7.17 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.85 Total: -9.53 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.07 Total: -54.54 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.00 -10.04 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724274714.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.235 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.26 seconds