Wall clock time and date at job start Wed Apr 1 2020 02:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 110.26619 * 2 1 4 4 O 1.21285 * 120.00620 * 1.68725 * 3 2 1 5 5 N 1.34781 * 119.99605 * 181.68514 * 3 2 1 6 6 C 1.48142 * 127.83866 * 355.00851 * 5 3 2 7 7 C 1.54386 * 104.61968 * 140.41175 * 6 5 3 8 8 C 1.54288 * 104.96139 * 23.86720 * 7 6 5 9 9 C 1.52992 * 110.34698 * 118.97849 * 8 7 6 10 10 C 1.53001 * 110.33929 * 241.13395 * 8 7 6 11 11 N 1.46504 * 109.46758 * 298.53916 * 10 8 7 12 12 C 1.36941 * 119.99850 * 179.72692 * 11 10 8 13 13 H 1.07997 * 119.99698 * 359.97438 * 12 11 10 14 14 C 1.38808 * 119.99921 * 180.02562 * 12 11 10 15 15 N 1.31626 * 120.00203 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99930 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47421 * 59.99674 * 16 14 12 18 18 H 1.48499 * 109.47101 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46837 * 299.99519 * 16 14 12 20 20 C 1.48151 * 127.83743 * 175.00303 * 5 3 2 21 21 C 1.54343 * 110.30148 * 122.07605 * 2 1 3 22 22 C 1.54339 * 102.39447 * 92.67273 * 21 2 1 23 23 C 1.51378 * 105.17124 * 26.34607 * 22 21 2 24 24 C 1.38494 * 130.39469 * 162.81073 * 23 22 21 25 25 C 1.38102 * 120.21098 * 180.02562 * 24 23 22 26 26 C 1.38251 * 119.94061 * 359.97438 * 25 24 23 27 27 C 1.38099 * 119.93342 * 0.02562 * 26 25 24 28 28 C 1.38223 * 109.75200 * 342.81229 * 23 22 21 29 29 H 1.08999 * 109.47465 * 64.00875 * 1 2 3 30 30 H 1.09000 * 109.47486 * 184.00999 * 1 2 3 31 31 H 1.09000 * 109.47308 * 304.01139 * 1 2 3 32 32 H 1.08994 * 110.41197 * 21.62368 * 6 5 3 33 33 H 1.09005 * 110.40308 * 259.19636 * 6 5 3 34 34 H 1.09000 * 110.34461 * 264.99379 * 7 6 5 35 35 H 1.09007 * 110.34153 * 142.72965 * 7 6 5 36 36 H 1.09003 * 109.47294 * 182.87784 * 9 8 7 37 37 H 1.09010 * 109.46887 * 302.87323 * 9 8 7 38 38 H 1.08993 * 109.47415 * 62.87134 * 9 8 7 39 39 H 1.09004 * 109.46899 * 178.54748 * 10 8 7 40 40 H 1.08993 * 109.47690 * 58.53959 * 10 8 7 41 41 H 0.96998 * 120.00275 * 0.02562 * 11 10 8 42 42 H 0.96993 * 119.99791 * 179.97438 * 15 14 12 43 43 H 1.08997 * 110.40735 * 100.79894 * 20 5 3 44 44 H 1.09001 * 110.40522 * 338.36825 * 20 5 3 45 45 H 1.08996 * 110.82112 * 210.90146 * 21 2 1 46 46 H 1.09000 * 110.82479 * 334.24819 * 21 2 1 47 47 H 1.09003 * 110.30841 * 145.26886 * 22 21 2 48 48 H 1.09000 * 110.30737 * 267.32960 * 22 21 2 49 49 H 1.07993 * 119.89170 * 359.97438 * 24 23 22 50 50 H 1.08011 * 120.02911 * 180.02562 * 25 24 23 51 51 H 1.08002 * 120.03356 * 179.97438 * 26 25 24 52 52 H 1.08002 * 119.89324 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0520 1.4137 0.0000 4 8 1.2772 2.3463 0.0309 5 7 3.3799 1.6416 -0.0343 6 6 4.4749 0.6456 0.0271 7 6 5.5260 1.1594 -0.9801 8 6 5.2629 2.6756 -1.0918 9 6 6.4951 3.4638 -0.6434 10 6 4.8895 3.0462 -2.5285 11 7 6.0021 2.7164 -3.4227 12 6 5.8945 2.9561 -4.7667 13 1 4.9893 3.3878 -5.1674 14 6 6.9485 2.6432 -5.6141 15 7 8.0515 2.1165 -5.1257 16 14 6.8020 2.9708 -7.4473 17 1 6.5773 4.4209 -7.6746 18 1 8.0539 2.5508 -8.1267 19 1 5.6582 2.2003 -7.9979 20 6 4.0758 2.9451 -0.1422 21 6 2.0655 -0.7687 1.2266 22 6 2.2464 -2.1967 0.6695 23 6 2.4689 -2.0168 -0.8170 24 6 2.9903 -2.8886 -1.7584 25 6 3.1004 -2.5004 -3.0791 26 6 2.6886 -1.2379 -3.4639 27 6 2.1685 -0.3673 -2.5266 28 6 2.0572 -0.7546 -1.2015 29 1 -0.3634 0.4503 -0.9237 30 1 -0.3634 -1.0251 0.0719 31 1 -0.3634 0.5748 0.8519 32 1 4.1115 -0.3377 -0.2712 33 1 4.8975 0.6070 1.0312 34 1 5.3893 0.6788 -1.9488 35 1 6.5326 0.9763 -0.6039 36 1 6.2767 4.5311 -0.6793 37 1 6.7564 3.1805 0.3763 38 1 7.3303 3.2413 -1.3075 39 1 4.6818 4.1147 -2.5858 40 1 4.0035 2.4871 -2.8294 41 1 6.8133 2.3243 -3.0635 42 1 8.7878 1.8975 -5.7179 43 1 4.4361 3.2656 0.8353 44 1 3.4112 3.6966 -0.5685 45 1 3.0198 -0.3573 1.5553 46 1 1.3394 -0.7557 2.0394 47 1 3.1132 -2.6741 1.1266 48 1 1.3498 -2.7896 0.8501 49 1 3.3125 -3.8747 -1.4585 50 1 3.5070 -3.1828 -3.8110 51 1 2.7744 -0.9327 -4.4963 52 1 1.8474 0.6189 -2.8279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724274716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:40 Heat of formation + Delta-G solvation = 3.305843 kcal Electronic energy + Delta-G solvation = -32046.125920 eV Core-core repulsion = 28203.304455 eV Total energy + Delta-G solvation = -3842.821465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.29899 -39.31831 -37.99692 -35.98556 -34.69547 -32.63504 -32.02583 -30.23831 -29.76524 -29.35372 -28.80113 -26.93133 -25.72834 -24.68384 -23.31007 -22.72076 -22.35747 -21.21433 -21.01880 -19.01456 -18.45223 -17.22902 -16.96782 -15.98579 -15.78907 -15.69621 -15.29004 -14.96522 -14.52842 -14.31926 -14.16357 -13.81175 -13.56451 -13.35752 -13.29587 -13.08012 -12.85887 -12.70149 -12.55596 -12.43583 -12.22991 -12.19525 -12.00467 -11.87705 -11.76278 -11.53369 -11.16094 -11.11367 -10.99856 -10.90337 -10.78999 -10.73310 -10.55506 -10.26838 -10.23418 -9.89051 -9.69492 -9.60851 -8.84853 -8.77242 -8.57374 -8.47453 -6.88226 -5.74728 -3.02054 1.33536 1.42586 2.67292 3.04313 3.44590 3.49261 3.50110 3.76173 4.16417 4.33944 4.47453 4.59219 4.74384 4.83845 4.88828 4.94979 5.04552 5.08953 5.18545 5.21519 5.27259 5.36534 5.47170 5.48401 5.54268 5.57778 5.59447 5.63286 5.67496 5.72241 5.80720 5.82889 5.84283 5.89155 5.97969 5.98962 6.04131 6.09852 6.14033 6.15811 6.30209 6.36816 6.48068 6.48923 6.58958 6.62647 6.64519 6.71859 6.84323 6.92941 7.01102 7.68752 7.72104 8.25073 8.44709 9.56166 10.14212 10.50036 11.48159 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011583 B = 0.004102 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.717622 B = 6824.814338 C = 7952.704714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.035 4.035 3 C 0.547 3.453 4 O -0.544 6.544 5 N -0.611 5.611 6 C 0.093 3.907 7 C -0.122 4.122 8 C -0.079 4.079 9 C -0.132 4.132 10 C 0.170 3.830 11 N -0.727 5.727 12 C -0.235 4.235 13 H 0.067 0.933 14 C -0.012 4.012 15 N -0.934 5.934 16 Si 0.904 3.096 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.287 1.287 20 C 0.116 3.884 21 C -0.115 4.115 22 C -0.078 4.078 23 C -0.098 4.098 24 C -0.109 4.109 25 C -0.112 4.112 26 C -0.106 4.106 27 C -0.088 4.088 28 C -0.085 4.085 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.119 0.881 50 H 0.124 0.876 51 H 0.127 0.873 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.459 -10.470 14.806 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.038 4.038 3 C 0.335 3.665 4 O -0.421 6.421 5 N -0.344 5.344 6 C -0.029 4.029 7 C -0.160 4.160 8 C -0.080 4.080 9 C -0.189 4.189 10 C 0.042 3.958 11 N -0.372 5.372 12 C -0.366 4.366 13 H 0.085 0.915 14 C -0.208 4.208 15 N -0.583 5.583 16 Si 0.735 3.265 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.214 1.214 20 C -0.007 4.007 21 C -0.152 4.152 22 C -0.115 4.115 23 C -0.098 4.098 24 C -0.127 4.127 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.106 4.106 28 C -0.085 4.085 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.137 0.863 50 H 0.142 0.858 51 H 0.145 0.855 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.051 -9.931 14.670 20.880 hybrid contribution 0.418 0.104 -1.165 1.242 sum -10.633 -9.826 13.505 19.799 Atomic orbital electron populations 1.21581 0.90887 1.01757 1.03402 1.20287 0.97601 0.91685 0.94192 1.19958 0.80336 0.90573 0.75616 1.90683 1.55434 1.45346 1.50673 1.48831 1.04406 1.09277 1.71843 1.22677 0.87500 0.93541 0.99222 1.22618 0.98009 0.95160 1.00240 1.21672 0.94616 0.95299 0.96447 1.21780 0.97460 0.99553 1.00123 1.20631 0.91617 0.96716 0.86806 1.42335 1.15366 1.75686 1.03768 1.19162 0.99622 1.34135 0.83726 0.91500 1.24674 0.96381 1.01953 0.97802 1.69641 1.05397 1.49157 1.34117 0.86314 0.76603 0.77890 0.85673 1.21348 1.21727 1.21391 1.22431 0.93419 0.85965 0.98895 1.22536 1.02167 0.94540 0.95997 1.21014 1.02402 0.96958 0.91096 1.20450 0.99495 0.94361 0.95530 1.20543 1.00440 0.99151 0.92566 1.21081 0.99555 0.96590 0.95786 1.21112 0.97886 0.93587 0.99859 1.20637 0.98723 0.99611 0.91642 1.20051 1.00120 0.95037 0.93334 0.91796 0.91869 0.91431 0.89560 0.91646 0.89547 0.90633 0.92748 0.93418 0.90957 0.96491 0.96491 0.78114 0.93574 0.91292 0.90081 0.90094 0.89773 0.90333 0.90023 0.86325 0.85819 0.85488 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 7.83 37.16 0.29 -1.05 16 2 C -0.03 -0.42 0.66 -155.79 -0.10 -0.52 16 3 C 0.55 8.32 6.50 -10.99 -0.07 8.25 16 4 O -0.54 -10.02 16.31 5.55 0.09 -9.93 16 5 N -0.61 -8.79 3.25 -169.31 -0.55 -9.34 16 6 C 0.09 1.19 4.98 -2.41 -0.01 1.18 16 7 C -0.12 -1.85 5.78 -25.33 -0.15 -2.00 16 8 C -0.08 -1.27 0.73 -153.11 -0.11 -1.38 16 9 C -0.13 -1.99 8.08 37.15 0.30 -1.69 16 10 C 0.17 3.49 4.90 -4.04 -0.02 3.47 16 11 N -0.73 -17.95 4.91 -59.91 -0.29 -18.25 16 12 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 13 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 14 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 15 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 16 Si 0.90 22.42 29.55 -169.99 -5.02 17.39 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 C 0.12 1.71 6.13 -2.41 -0.01 1.69 16 21 C -0.11 -1.07 5.42 -25.33 -0.14 -1.20 16 22 C -0.08 -0.65 6.71 -26.85 -0.18 -0.83 16 23 C -0.10 -1.08 5.06 -104.20 -0.53 -1.61 16 24 C -0.11 -1.19 10.04 -39.54 -0.40 -1.59 16 25 C -0.11 -1.35 10.05 -39.63 -0.40 -1.75 16 26 C -0.11 -1.47 10.05 -39.63 -0.40 -1.87 16 27 C -0.09 -1.27 9.78 -39.53 -0.39 -1.66 16 28 C -0.09 -1.08 3.18 -104.20 -0.33 -1.41 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.75 8.00 -51.93 -0.42 0.34 16 32 H 0.09 1.09 4.21 -51.93 -0.22 0.87 16 33 H 0.07 0.70 7.95 -51.93 -0.41 0.29 16 34 H 0.09 1.59 7.49 -51.93 -0.39 1.20 16 35 H 0.08 1.07 7.71 -51.93 -0.40 0.67 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.07 1.27 6.96 -51.93 -0.36 0.91 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.38 9.84 6.26 -40.82 -0.26 9.58 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 44 H 0.08 1.32 7.64 -51.93 -0.40 0.92 16 45 H 0.08 0.76 5.73 -51.93 -0.30 0.46 16 46 H 0.08 0.66 7.90 -51.93 -0.41 0.24 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 50 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 51 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 52 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -31.96 400.99 -10.49 -42.45 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -8.59 Total: 9.76 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.89 Total: -11.10 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.12 Total: -54.61 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.96 -10.49 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724274716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.752 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds