Wall clock time and date at job start Wed Apr 1 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38259 * 120.00392 * 2 1 4 4 C 1.38207 * 120.00324 * 180.23452 * 3 2 1 5 5 C 1.38261 * 120.00080 * 359.81693 * 4 3 2 6 6 C 1.38219 * 119.99679 * 359.97438 * 5 4 3 7 7 C 1.38212 * 120.00164 * 179.80062 * 2 1 3 8 8 C 1.50708 * 119.99832 * 359.97438 * 7 2 1 9 9 C 1.52991 * 109.47243 * 280.19008 * 8 7 2 10 10 H 1.09004 * 109.47269 * 54.67837 * 9 8 7 11 11 C 1.53000 * 109.47195 * 294.67939 * 9 8 7 12 12 C 1.50697 * 109.47125 * 174.67956 * 9 8 7 13 13 O 1.21282 * 120.00198 * 0.02562 * 12 9 8 14 14 N 1.34783 * 120.00036 * 179.72368 * 12 9 8 15 15 C 1.46495 * 120.00082 * 180.27576 * 14 12 9 16 16 C 1.53001 * 109.47360 * 180.02562 * 15 14 12 17 17 H 1.08996 * 115.51486 * 29.58303 * 16 15 14 18 18 C 1.52997 * 117.44201 * 244.24384 * 16 15 14 19 19 H 1.09002 * 119.54099 * 4.11179 * 18 16 15 20 20 C 1.54385 * 118.12491 * 160.80747 * 18 16 15 21 21 N 1.48148 * 104.61852 * 87.18419 * 20 18 16 22 22 C 1.36942 * 127.83731 * 140.41341 * 21 20 18 23 23 H 1.08000 * 120.00024 * 346.85139 * 22 21 20 24 24 C 1.38810 * 120.00200 * 166.84732 * 22 21 20 25 25 N 1.31623 * 119.99477 * 350.82998 * 24 22 21 26 26 Si 1.86795 * 120.00283 * 170.83552 * 24 22 21 27 27 H 1.48503 * 109.47175 * 94.89486 * 26 24 22 28 28 H 1.48498 * 109.47404 * 214.89599 * 26 24 22 29 29 H 1.48498 * 109.46866 * 334.89463 * 26 24 22 30 30 C 1.51820 * 104.55123 * 320.14272 * 21 20 18 31 31 C 1.52996 * 117.44291 * 174.99967 * 16 15 14 32 32 H 1.08997 * 119.54104 * 355.88504 * 31 16 15 33 33 H 1.09004 * 109.46911 * 264.92310 * 1 2 3 34 34 H 1.09005 * 109.46967 * 24.91127 * 1 2 3 35 35 H 1.08995 * 109.47693 * 144.92001 * 1 2 3 36 36 H 1.08009 * 119.99875 * 0.07247 * 3 2 1 37 37 H 1.08005 * 120.00241 * 179.83962 * 4 3 2 38 38 H 1.07999 * 120.00240 * 180.02562 * 5 4 3 39 39 H 1.07993 * 119.99542 * 180.02562 * 6 5 4 40 40 H 1.09003 * 109.46935 * 160.18511 * 8 7 2 41 41 H 1.09004 * 109.46881 * 40.18926 * 8 7 2 42 42 H 1.09005 * 109.47094 * 65.45942 * 11 9 8 43 43 H 1.09002 * 109.47363 * 185.45967 * 11 9 8 44 44 H 1.09001 * 109.47370 * 305.46357 * 11 9 8 45 45 H 0.97002 * 120.00107 * 0.27674 * 14 12 9 46 46 H 1.09004 * 109.47475 * 300.00158 * 15 14 12 47 47 H 1.08999 * 109.47234 * 60.00096 * 15 14 12 48 48 H 1.08996 * 110.40938 * 205.97082 * 20 18 16 49 49 H 1.09001 * 110.40514 * 328.40117 * 20 18 16 50 50 H 0.97007 * 119.99414 * 180.02562 * 25 24 22 51 51 H 1.08998 * 111.95548 * 281.18927 * 30 21 20 52 52 H 1.09007 * 110.53038 * 157.59884 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0060 6 6 3.5806 -1.1970 -0.0016 7 6 2.1981 -1.1969 0.0042 8 6 1.4445 -2.5021 0.0093 9 6 0.9691 -2.8109 1.4303 10 1 0.3912 -1.9688 1.8112 11 6 2.1811 -3.0478 2.3335 12 6 0.1059 -4.0460 1.4139 13 8 -0.1077 -4.6228 0.3686 14 7 -0.4240 -4.5133 2.5617 15 6 -1.2582 -5.7174 2.5467 16 6 -1.7296 -6.0291 3.9685 17 1 -1.8454 -5.1664 4.6244 18 6 -1.2455 -7.3352 4.6014 19 1 -0.5372 -7.9638 4.0617 20 6 -1.3154 -7.4690 6.1379 21 7 -2.6803 -7.9782 6.4071 22 6 -3.0606 -8.9141 7.3317 23 1 -2.3154 -9.5242 7.8204 24 6 -4.4038 -9.0785 7.6408 25 7 -5.2933 -8.2213 7.1865 26 14 -4.9489 -10.5162 8.7016 27 1 -5.0390 -10.0799 10.1183 28 1 -6.2792 -10.9921 8.2447 29 1 -3.9617 -11.6194 8.5852 30 6 -3.5676 -7.2250 5.4323 31 6 -2.7126 -7.1878 4.1472 32 1 -3.0972 -7.7066 3.2692 33 1 -0.3633 -0.0909 1.0237 34 1 -0.3633 0.9321 -0.4329 35 1 -0.3634 -0.8409 -0.5906 36 1 1.6583 2.1327 0.0012 37 1 4.1205 2.1326 -0.0075 38 1 5.3517 -0.0001 -0.0094 39 1 4.1206 -2.1323 -0.0020 40 1 2.1000 -3.3014 -0.3364 41 1 0.5827 -2.4266 -0.6539 42 1 2.7536 -2.1245 2.4228 43 1 1.8427 -3.3624 3.3207 44 1 2.8106 -3.8251 1.9004 45 1 -0.2529 -4.0522 3.3979 46 1 -2.1239 -5.5518 1.9053 47 1 -0.6777 -6.5568 2.1638 48 1 -0.5681 -8.1791 6.4920 49 1 -1.1720 -6.4975 6.6109 50 1 -6.2319 -8.3361 7.4029 51 1 -3.7826 -6.2129 5.7752 52 1 -4.4938 -7.7725 5.2569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725317826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:54 Heat of formation + Delta-G solvation = 29.387347 kcal Electronic energy + Delta-G solvation = -28746.667947 eV Core-core repulsion = 24904.977460 eV Total energy + Delta-G solvation = -3841.690486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.46437 -39.54070 -38.62798 -35.33429 -34.89534 -33.30900 -32.96598 -31.33585 -30.62310 -27.72687 -27.31502 -27.07537 -26.76143 -25.02509 -23.38683 -22.28990 -21.17862 -20.94728 -20.33408 -19.48279 -19.17616 -17.38504 -16.81520 -16.53968 -16.16063 -16.03713 -15.37475 -15.18054 -14.85889 -14.48248 -14.24189 -14.16380 -13.71209 -13.64933 -13.45494 -13.19770 -12.98275 -12.89748 -12.71995 -12.61715 -12.48227 -12.45419 -12.27703 -11.83673 -11.55248 -11.40079 -11.24423 -11.17464 -11.08966 -11.03968 -10.82655 -10.68489 -10.34921 -10.13975 -9.90275 -9.67170 -9.40488 -9.14488 -9.08180 -8.94537 -8.85740 -8.67384 -6.89910 -5.78987 -3.11835 1.03738 1.08223 2.57241 3.08424 3.37693 3.43570 3.45661 3.46142 4.12463 4.37197 4.45597 4.46534 4.57687 4.62511 4.64591 4.76230 4.83402 4.90268 4.98377 5.11025 5.15326 5.27071 5.28902 5.34813 5.35847 5.44403 5.45759 5.48267 5.50893 5.54591 5.58245 5.71468 5.74958 5.79915 5.86925 5.89418 5.91629 5.94353 5.98872 6.19156 6.21108 6.22019 6.36319 6.39584 6.54931 6.64569 6.68937 6.71900 6.89430 7.30075 7.45661 7.51441 7.70337 8.14838 8.16089 9.06158 9.72863 10.48734 11.35411 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.029189 B = 0.001637 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.043281 B =17104.977346 C =17229.408005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.078 4.078 8 C -0.063 4.063 9 C -0.105 4.105 10 H 0.098 0.902 11 C -0.145 4.145 12 C 0.515 3.485 13 O -0.544 6.544 14 N -0.723 5.723 15 C 0.154 3.846 16 C -0.152 4.152 17 H 0.102 0.898 18 C -0.169 4.169 19 H 0.103 0.897 20 C 0.157 3.843 21 N -0.600 5.600 22 C -0.223 4.223 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.918 5.918 26 Si 0.912 3.088 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.181 3.819 31 C -0.160 4.160 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.401 0.599 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.049 0.951 49 H 0.022 0.978 50 H 0.254 0.746 51 H 0.028 0.972 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.686 18.892 -14.764 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.078 4.078 8 C -0.100 4.100 9 C -0.126 4.126 10 H 0.116 0.884 11 C -0.202 4.202 12 C 0.301 3.699 13 O -0.422 6.422 14 N -0.374 5.374 15 C 0.031 3.969 16 C -0.171 4.171 17 H 0.120 0.880 18 C -0.189 4.189 19 H 0.121 0.879 20 C 0.031 3.969 21 N -0.325 5.325 22 C -0.351 4.351 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.565 5.565 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.206 1.206 30 C 0.057 3.943 31 C -0.180 4.180 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.236 0.764 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.040 0.960 50 H 0.064 0.936 51 H 0.046 0.954 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.301 18.309 -15.356 28.926 hybrid contribution -0.172 -0.419 0.974 1.074 sum 16.129 17.889 -14.381 28.053 Atomic orbital electron populations 1.20899 0.91248 1.03025 1.02564 1.19799 0.96057 0.92605 0.99699 1.21038 0.94286 0.97415 1.01032 1.21118 0.94323 0.98030 1.00570 1.21125 0.99800 0.92554 1.00875 1.21077 0.93544 0.98159 1.00094 1.19734 0.93640 0.94405 1.00039 1.20426 1.00409 0.93887 0.95316 1.21272 0.97121 0.96355 0.97832 0.88402 1.21822 0.96792 1.02766 0.98839 1.20602 0.79916 0.85821 0.83577 1.90701 1.60688 1.59653 1.31110 1.46068 1.51827 1.29452 1.10061 1.20873 0.93908 0.86541 0.95592 1.22549 1.05311 0.93727 0.95504 0.87994 1.23996 0.98574 0.98390 0.97916 0.87941 1.21077 0.89346 0.96596 0.89898 1.46116 1.00561 1.45603 1.40238 1.19037 0.91889 1.09452 1.14763 0.90537 1.24834 0.96226 0.99042 1.00415 1.69876 1.01294 1.35972 1.49394 0.86104 0.77983 0.81883 0.79811 1.21605 1.21580 1.20574 1.21774 0.93968 0.95368 0.83175 1.24141 0.93085 0.99294 1.01515 0.87985 0.91017 0.91624 0.90921 0.86208 0.86301 0.86242 0.86063 0.90357 0.89737 0.91285 0.91923 0.91959 0.76407 0.91200 0.91496 0.93210 0.96043 0.93629 0.95387 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 8.94 36.00 0.32 -0.50 16 2 C -0.08 -0.65 5.87 -104.63 -0.61 -1.27 16 3 C -0.12 -0.89 9.68 -39.59 -0.38 -1.27 16 4 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 5 C -0.13 -0.90 10.05 -39.58 -0.40 -1.29 16 6 C -0.11 -0.85 8.97 -39.58 -0.36 -1.21 16 7 C -0.08 -0.65 4.42 -104.62 -0.46 -1.11 16 8 C -0.06 -0.56 3.64 -27.88 -0.10 -0.66 16 9 C -0.10 -0.89 2.65 -91.78 -0.24 -1.13 16 10 H 0.10 0.73 6.88 -51.93 -0.36 0.37 16 11 C -0.14 -1.06 8.73 37.16 0.32 -0.74 16 12 C 0.51 6.03 7.16 -10.98 -0.08 5.95 16 13 O -0.54 -8.45 15.91 5.56 0.09 -8.36 16 14 N -0.72 -7.98 5.41 -60.29 -0.33 -8.30 16 15 C 0.15 2.04 5.95 -4.04 -0.02 2.01 16 16 C -0.15 -2.26 5.38 -90.62 -0.49 -2.75 16 17 H 0.10 1.50 8.04 -51.93 -0.42 1.08 16 18 C -0.17 -2.92 6.74 -89.22 -0.60 -3.52 16 19 H 0.10 1.65 8.12 -51.93 -0.42 1.23 16 20 C 0.16 3.23 7.05 -2.41 -0.02 3.21 16 21 N -0.60 -15.25 3.46 -165.71 -0.57 -15.82 16 22 C -0.22 -6.20 10.37 -15.06 -0.16 -6.36 16 23 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 24 C -0.01 -0.24 5.42 -17.43 -0.09 -0.34 16 25 N -0.92 -26.71 10.73 55.49 0.60 -26.11 16 26 Si 0.91 21.90 29.56 -169.99 -5.03 16.87 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 30 C 0.18 4.27 5.97 -0.29 0.00 4.27 16 31 C -0.16 -2.97 6.76 -89.22 -0.60 -3.57 16 32 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.07 0.45 7.48 -51.93 -0.39 0.06 16 34 H 0.06 0.38 8.05 -51.93 -0.42 -0.04 16 35 H 0.07 0.53 6.34 -51.93 -0.33 0.20 16 36 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 38 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.12 0.80 8.03 -52.49 -0.42 0.37 16 40 H 0.08 0.73 8.00 -51.93 -0.42 0.32 16 41 H 0.08 0.82 6.28 -51.93 -0.33 0.50 16 42 H 0.07 0.48 7.13 -51.93 -0.37 0.11 16 43 H 0.06 0.42 7.40 -51.93 -0.38 0.04 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.40 3.57 7.75 -40.82 -0.32 3.26 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.09 2.51 6.43 -51.92 -0.33 2.18 16 LS Contribution 413.25 15.07 6.23 6.23 Total: -1.00 -32.11 413.25 -12.05 -44.16 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.66 Total: 2.86 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -4.37 Total: -11.52 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.30 Total: -50.24 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.11 -12.05 -44.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725317826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.548 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds