Wall clock time and date at job start Wed Apr 1 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99863 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47029 * 180.02562 * 6 4 3 8 8 C 1.38264 * 120.11619 * 90.00255 * 7 6 4 9 9 C 1.37933 * 119.77738 * 180.14229 * 8 7 6 10 10 C 1.38913 * 120.54030 * 0.03598 * 9 8 7 11 11 C 1.37663 * 119.68317 * 359.68081 * 10 9 8 12 12 C 1.37940 * 120.11496 * 269.72768 * 7 6 4 13 13 C 1.50627 * 122.55485 * 180.75211 * 11 10 9 14 14 C 1.52735 * 110.58130 * 341.89918 * 13 11 10 15 15 C 1.53325 * 108.38839 * 51.19288 * 14 13 11 16 16 C 1.50632 * 117.75635 * 179.31575 * 10 9 8 17 17 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 18 18 C 1.54325 * 102.94184 * 206.42607 * 17 2 1 19 19 N 1.47022 * 107.26948 * 22.19107 * 18 17 2 20 20 C 1.36945 * 125.64832 * 181.02381 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47423 * 108.70390 * 1.29074 * 19 18 17 29 29 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 30 30 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 31 31 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 32 32 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 33 33 H 1.08994 * 109.47196 * 300.00527 * 6 4 3 34 34 H 1.09002 * 109.46928 * 60.00592 * 6 4 3 35 35 H 1.08002 * 120.10775 * 0.16635 * 8 7 6 36 36 H 1.07999 * 119.72813 * 180.02562 * 9 8 7 37 37 H 1.07996 * 119.72753 * 359.97438 * 12 7 6 38 38 H 1.09001 * 109.25464 * 102.18447 * 13 11 10 39 39 H 1.09000 * 109.25797 * 221.65094 * 13 11 10 40 40 H 1.09004 * 109.67745 * 170.91258 * 14 13 11 41 41 H 1.08993 * 109.68235 * 291.43161 * 14 13 11 42 42 H 1.08994 * 109.67639 * 49.92778 * 15 14 13 43 43 H 1.08998 * 109.67197 * 170.42904 * 15 14 13 44 44 H 1.08998 * 109.25201 * 282.66062 * 16 10 9 45 45 H 1.08993 * 109.25288 * 42.08592 * 16 10 9 46 46 H 1.09000 * 110.72140 * 88.06437 * 17 2 1 47 47 H 1.08998 * 110.72520 * 324.78756 * 17 2 1 48 48 H 1.09002 * 109.88274 * 262.77538 * 18 17 2 49 49 H 1.09000 * 110.01178 * 141.68100 * 18 17 2 50 50 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 51 51 H 1.09000 * 110.37068 * 94.48354 * 28 19 18 52 52 H 1.09005 * 110.36651 * 216.80519 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9221 1.8729 1.8407 6 6 2.2239 3.6379 0.9691 7 6 1.6634 4.3898 2.1486 8 6 2.3326 4.3812 3.3584 9 6 1.8117 5.0695 4.4343 10 6 0.6191 5.7713 4.3129 11 6 -0.0442 5.7847 3.1066 12 6 0.4838 5.0939 2.0234 13 6 -1.3322 6.5375 2.8982 14 6 -1.9863 6.8639 4.2392 15 6 -0.9401 7.5347 5.1372 16 6 0.0994 6.4876 5.5318 17 6 2.0861 -0.8079 -1.2023 18 6 3.4674 -1.2742 -0.6961 19 7 3.4270 -1.2431 0.7733 20 6 4.4640 -1.5668 1.6072 21 1 4.3332 -1.5120 2.6778 22 6 5.6830 -1.9654 1.0763 23 7 5.8425 -2.0318 -0.2285 24 14 7.0977 -2.4063 2.2138 25 1 7.9011 -1.1904 2.4988 26 1 6.5588 -2.9527 3.4852 27 1 7.9577 -3.4262 1.5617 28 6 2.0835 -0.8120 1.2003 29 1 -0.3634 -1.0252 0.0699 30 1 -0.3633 0.5732 0.8529 31 1 -0.3634 0.4521 -0.9229 32 1 2.6639 1.6542 -0.6973 33 1 3.3113 3.6109 1.0392 34 1 1.9317 4.1389 0.0462 35 1 3.2603 3.8376 3.4606 36 1 2.3353 5.0625 5.3789 37 1 -0.0358 5.1042 1.0767 38 1 -1.1242 7.4649 2.3645 39 1 -2.0135 5.9270 2.3057 40 1 -2.8251 7.5423 4.0830 41 1 -2.3393 5.9457 4.7086 42 1 -0.4560 8.3460 4.5937 43 1 -1.4227 7.9288 6.0315 44 1 -0.3578 5.7638 6.2064 45 1 0.9287 6.9786 6.0409 46 1 2.1922 -0.1699 -2.0797 47 1 1.4467 -1.6632 -1.4210 48 1 4.2426 -0.5999 -1.0600 49 1 3.6676 -2.2890 -1.0400 50 1 6.6945 -2.3100 -0.5994 51 1 1.4523 -1.6782 1.3988 52 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733414230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:13 Heat of formation + Delta-G solvation = -7.269951 kcal Electronic energy + Delta-G solvation = -30229.481351 eV Core-core repulsion = 26386.201285 eV Total energy + Delta-G solvation = -3843.280066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.31695 -39.55573 -37.42318 -36.19010 -33.85391 -32.87127 -32.13362 -31.42978 -29.97956 -29.21820 -28.64773 -27.10898 -25.62828 -23.78236 -23.52042 -22.49584 -22.15173 -20.75271 -20.09299 -19.07390 -18.96049 -17.12819 -16.45217 -16.27248 -15.76698 -15.61934 -15.18763 -14.67445 -14.60169 -14.46184 -14.05186 -13.88750 -13.72912 -13.66439 -13.31458 -13.03041 -12.88599 -12.69853 -12.53550 -12.21254 -12.02643 -11.91188 -11.87321 -11.65540 -11.56010 -11.35531 -11.29093 -11.11752 -10.88592 -10.85505 -10.58434 -10.43201 -10.33758 -10.31804 -10.06609 -9.96698 -9.64345 -9.18926 -8.64020 -8.62175 -8.46525 -8.35100 -6.78145 -5.69459 -3.01206 1.38274 1.47076 3.05241 3.40782 3.46404 3.48338 3.49924 3.91354 4.46536 4.52181 4.52298 4.67255 4.79834 4.92573 4.96371 5.03619 5.06755 5.28757 5.32130 5.32852 5.35533 5.41048 5.43437 5.47195 5.51151 5.58074 5.64874 5.65827 5.72376 5.75965 5.76612 5.81255 5.86778 6.05436 6.06967 6.13754 6.17334 6.20296 6.20840 6.40742 6.43497 6.51248 6.58557 6.66690 6.69879 6.73614 6.83946 7.08715 7.19686 7.56387 7.58355 7.81797 7.99604 8.27977 8.68531 9.25273 9.85347 10.51690 11.42579 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.002670 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.833221 B =10484.720096 C =11713.002149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 N -0.703 5.703 4 C 0.518 3.482 5 O -0.533 6.533 6 C -0.105 4.105 7 C -0.057 4.057 8 C -0.103 4.103 9 C -0.119 4.119 10 C -0.082 4.082 11 C -0.079 4.079 12 C -0.106 4.106 13 C -0.079 4.079 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.079 4.079 17 C -0.147 4.147 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.220 4.220 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.925 5.925 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.282 1.282 27 H -0.291 1.291 28 C 0.133 3.867 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.398 0.602 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.045 0.955 49 H 0.043 0.957 50 H 0.251 0.749 51 H 0.024 0.976 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.217 19.016 2.614 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.071 3.929 3 N -0.353 5.353 4 C 0.303 3.697 5 O -0.410 6.410 6 C -0.145 4.145 7 C -0.058 4.058 8 C -0.121 4.121 9 C -0.137 4.137 10 C -0.082 4.082 11 C -0.079 4.079 12 C -0.124 4.124 13 C -0.115 4.115 14 C -0.157 4.157 15 C -0.156 4.156 16 C -0.116 4.116 17 C -0.186 4.186 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.349 4.349 21 H 0.093 0.907 22 C -0.206 4.206 23 N -0.573 5.573 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.207 1.207 27 H -0.217 1.217 28 C 0.007 3.993 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.232 0.768 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.042 0.958 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.538 18.654 3.223 23.273 hybrid contribution 1.349 -0.362 0.092 1.399 sum -12.190 18.292 3.315 22.230 Atomic orbital electron populations 1.22034 0.94400 1.02271 1.02395 1.21470 0.92566 0.80954 0.97865 1.45808 1.48731 1.11760 1.29051 1.20290 0.81290 0.86595 0.81482 1.90652 1.35568 1.78416 1.36354 1.20695 1.02507 0.93193 0.98109 1.19168 0.95257 0.96915 0.94437 1.20946 1.00159 0.98525 0.92487 1.21062 0.95960 0.98102 0.98586 1.19517 0.95116 0.99022 0.94534 1.19462 0.96502 0.98915 0.93000 1.20906 0.95411 0.97760 0.98346 1.20435 0.93814 0.99461 0.97837 1.21543 0.97691 1.00841 0.95667 1.21533 0.96614 0.97861 0.99604 1.20444 0.98628 0.97405 0.95162 1.23223 1.00452 0.98916 0.95985 1.21149 0.90004 0.99899 0.83692 1.44450 1.07659 1.79030 1.01805 1.19060 0.89370 1.37459 0.88983 0.90653 1.24760 0.97755 1.02083 0.96009 1.69951 1.24065 1.54156 1.09152 0.86137 0.82374 0.77782 0.79624 1.21716 1.20744 1.21723 1.21907 0.87520 0.94800 0.95120 0.92088 0.90328 0.93369 0.76824 0.87969 0.88466 0.86089 0.86379 0.86596 0.90939 0.90932 0.91650 0.91569 0.91726 0.91667 0.90812 0.91024 0.91798 0.90991 0.93675 0.93886 0.93892 0.95819 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.59 37.16 0.32 -2.10 16 2 C 0.16 2.83 0.82 -129.55 -0.11 2.73 16 3 N -0.70 -11.38 5.19 -45.52 -0.24 -11.62 16 4 C 0.52 8.45 7.21 -10.98 -0.08 8.37 16 5 O -0.53 -10.44 12.87 5.56 0.07 -10.37 16 6 C -0.11 -1.33 5.84 -29.04 -0.17 -1.50 16 7 C -0.06 -0.78 4.37 -104.72 -0.46 -1.23 16 8 C -0.10 -1.42 9.71 -39.68 -0.39 -1.81 16 9 C -0.12 -1.49 9.61 -39.44 -0.38 -1.87 16 10 C -0.08 -0.96 5.74 -104.62 -0.60 -1.56 16 11 C -0.08 -0.93 5.74 -104.62 -0.60 -1.53 16 12 C -0.11 -1.34 9.27 -39.44 -0.37 -1.70 16 13 C -0.08 -0.71 5.67 -28.05 -0.16 -0.87 16 14 C -0.12 -0.95 5.98 -26.70 -0.16 -1.11 16 15 C -0.12 -0.90 5.98 -26.70 -0.16 -1.06 16 16 C -0.08 -0.72 5.67 -28.05 -0.16 -0.88 16 17 C -0.15 -2.63 5.97 -24.90 -0.15 -2.78 16 18 C 0.18 4.19 5.37 -3.06 -0.02 4.18 16 19 N -0.60 -15.53 3.39 -169.93 -0.58 -16.11 16 20 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -27.00 10.31 55.49 0.57 -26.43 16 24 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C 0.13 2.98 6.18 -2.41 -0.01 2.96 16 29 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.08 1.37 5.92 -51.93 -0.31 1.07 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.40 5.69 8.51 -40.82 -0.35 5.35 16 33 H 0.10 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.12 1.26 8.05 -52.49 -0.42 0.84 16 37 H 0.12 1.28 8.05 -52.49 -0.42 0.85 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 46 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 47 H 0.07 1.21 8.04 -51.93 -0.42 0.80 16 48 H 0.05 1.16 7.38 -51.93 -0.38 0.77 16 49 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.02 0.54 7.99 -51.93 -0.41 0.12 16 52 H 0.05 1.19 6.89 -51.93 -0.36 0.83 16 LS Contribution 404.10 15.07 6.09 6.09 Total: -1.00 -32.96 404.10 -11.90 -44.86 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.91 Total: 4.76 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -3.89 Total: -8.58 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.24 Total: -54.15 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.96 -11.90 -44.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733414230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.591 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds