Wall clock time and date at job start Wed Apr 1 2020 02:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 120.00143 * 2 1 4 4 C 1.38211 * 120.00174 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99904 * 359.69912 * 4 3 2 6 6 C 1.38214 * 119.99783 * 0.55172 * 5 4 3 7 7 C 1.50707 * 119.99776 * 179.74468 * 6 5 4 8 8 H 1.09003 * 115.55660 * 154.04188 * 7 6 5 9 9 C 1.52988 * 117.49961 * 8.35288 * 7 6 5 10 10 C 1.52992 * 117.49836 * 299.72682 * 7 6 5 11 11 H 1.09003 * 117.52002 * 0.02562 * 10 7 6 12 12 C 1.50703 * 117.50027 * 214.98115 * 10 7 6 13 13 O 1.21281 * 119.99666 * 359.97438 * 12 10 7 14 14 N 1.34774 * 120.00099 * 179.97438 * 12 10 7 15 15 C 1.47019 * 125.64846 * 359.96046 * 14 12 10 16 16 C 1.54331 * 107.27303 * 181.09368 * 15 14 12 17 17 C 1.55160 * 102.93892 * 22.18743 * 16 15 14 18 18 H 1.09004 * 111.03599 * 82.59041 * 17 16 15 19 19 C 1.53003 * 111.00466 * 206.42327 * 17 16 15 20 20 C 1.53003 * 109.47020 * 287.19888 * 19 17 16 21 21 N 1.46498 * 109.46778 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99972 * 179.97438 * 21 20 19 23 23 H 1.08002 * 119.99631 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00202 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00103 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00201 * 179.72570 * 24 22 21 27 27 H 1.48501 * 109.47085 * 270.27640 * 26 24 22 28 28 H 1.48497 * 109.46789 * 30.27649 * 26 24 22 29 29 H 1.48490 * 109.47245 * 150.27799 * 26 24 22 30 30 C 1.47427 * 125.64806 * 179.97438 * 14 12 10 31 31 C 1.38214 * 120.00163 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46952 * 270.02531 * 1 2 3 33 33 H 1.09007 * 109.47335 * 30.02137 * 1 2 3 34 34 H 1.09004 * 109.47180 * 150.02208 * 1 2 3 35 35 H 1.08000 * 119.99663 * 359.97438 * 3 2 1 36 36 H 1.08004 * 120.00070 * 179.97438 * 4 3 2 37 37 H 1.08000 * 120.00318 * 180.30641 * 5 4 3 38 38 H 1.08998 * 117.50203 * 145.02294 * 9 7 6 39 39 H 1.09007 * 117.52124 * 359.97438 * 9 7 6 40 40 H 1.08998 * 109.88354 * 300.50665 * 15 14 12 41 41 H 1.08996 * 109.88504 * 61.52264 * 15 14 12 42 42 H 1.08996 * 110.72187 * 263.83284 * 16 15 14 43 43 H 1.08994 * 110.71914 * 140.55069 * 16 15 14 44 44 H 1.08998 * 109.46872 * 167.20323 * 19 17 16 45 45 H 1.08994 * 109.46775 * 47.20133 * 19 17 16 46 46 H 1.08998 * 109.46943 * 60.00478 * 20 19 17 47 47 H 1.08994 * 109.47116 * 300.00090 * 20 19 17 48 48 H 0.97001 * 120.00384 * 0.02562 * 21 20 19 49 49 H 0.97005 * 119.99717 * 359.71965 * 25 24 22 50 50 H 1.08996 * 110.36698 * 37.00063 * 30 14 12 51 51 H 1.09002 * 110.36830 * 274.68120 * 30 14 12 52 52 H 1.08004 * 119.99798 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0052 6 6 3.5806 -1.1969 0.0000 7 6 4.3342 -2.5021 0.0004 8 1 3.8018 -3.3523 0.4270 9 6 5.8493 -2.4429 0.2039 10 6 5.2749 -2.7750 -1.1748 11 1 5.3495 -2.0106 -1.9483 12 6 5.3949 -4.1987 -1.6540 13 8 4.7589 -5.0770 -1.1109 14 7 6.2089 -4.4960 -2.6862 15 6 7.0327 -3.5337 -3.4325 16 6 7.7713 -4.3212 -4.5353 17 6 6.8897 -5.5862 -4.7086 18 1 6.0418 -5.3855 -5.3635 19 6 7.7160 -6.7630 -5.2314 20 6 8.0551 -6.5332 -6.7056 21 7 8.8468 -7.6597 -7.2059 22 6 9.2686 -7.6751 -8.5086 23 1 9.0179 -6.8565 -9.1670 24 6 10.0183 -8.7427 -8.9828 25 7 10.3233 -9.7406 -8.1805 26 14 10.5871 -8.7674 -10.7619 27 1 9.5579 -9.4314 -11.6016 28 1 10.7898 -7.3749 -11.2361 29 1 11.8658 -9.5156 -10.8624 30 6 6.4206 -5.8399 -3.2541 31 6 2.1981 -1.1970 0.0005 32 1 -0.3633 0.0005 1.0276 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6583 2.1326 -0.0004 36 1 4.1204 2.1327 -0.0010 37 1 5.3517 0.0000 0.0098 38 1 6.3140 -3.2542 0.7642 39 1 6.3016 -1.4601 0.3370 40 1 6.3963 -2.7725 -3.8837 41 1 7.7534 -3.0648 -2.7627 42 1 8.7752 -4.5926 -4.2089 43 1 7.8076 -3.7466 -5.4608 44 1 7.1415 -7.6838 -5.1301 45 1 8.6375 -6.8444 -4.6550 46 1 8.6297 -5.6124 -6.8069 47 1 7.1336 -6.4518 -7.2819 48 1 9.0716 -8.3951 -6.6146 49 1 10.0277 -9.7279 -7.2567 50 1 5.4885 -6.4049 -3.2493 51 1 7.1902 -6.3714 -2.6943 52 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733669182.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:04 Heat of formation + Delta-G solvation = 12.701994 kcal Electronic energy + Delta-G solvation = -28191.046313 eV Core-core repulsion = 24348.632295 eV Total energy + Delta-G solvation = -3842.414018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.73421 -39.80538 -38.27183 -36.62831 -35.36256 -33.22421 -32.90390 -31.29396 -30.82266 -29.59177 -27.65250 -27.25167 -25.01164 -23.98685 -23.30437 -22.83106 -22.42424 -21.64226 -20.24763 -20.15934 -19.12721 -17.88592 -17.26710 -16.99434 -16.31131 -15.95493 -15.51289 -15.37028 -14.93999 -14.59308 -14.36645 -14.19661 -14.00134 -13.85525 -13.67319 -13.55558 -13.45989 -13.26750 -12.77608 -12.73019 -12.67492 -12.52040 -12.28721 -12.19654 -11.79687 -11.69182 -11.36783 -11.32511 -11.06303 -10.89885 -10.82722 -10.73232 -10.61216 -10.51444 -10.37574 -10.06653 -9.99701 -9.16820 -9.13394 -8.90645 -8.87091 -8.81812 -6.99520 -6.10171 -3.09624 0.88711 0.99967 2.25628 2.70098 3.22123 3.51658 3.56835 3.65472 3.70769 4.00024 4.24024 4.37986 4.42248 4.44908 4.50598 4.54325 4.64559 4.70538 4.71374 4.75745 4.80691 4.94583 5.03244 5.04498 5.18632 5.22230 5.23461 5.30868 5.34921 5.41476 5.50335 5.51608 5.56013 5.61783 5.63854 5.69346 5.73087 5.75820 5.77189 5.84509 6.01574 6.04656 6.08249 6.16489 6.18617 6.19775 6.24839 6.31382 6.61605 6.74884 6.79429 7.31111 7.81461 7.95371 8.76555 9.24324 10.10623 10.25525 11.38691 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024095 B = 0.001516 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.811692 B =18467.921878 C =18704.596633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.048 4.048 7 C -0.084 4.084 8 H 0.127 0.873 9 C -0.143 4.143 10 C -0.173 4.173 11 H 0.125 0.875 12 C 0.557 3.443 13 O -0.542 6.542 14 N -0.614 5.614 15 C 0.101 3.899 16 C -0.127 4.127 17 C -0.094 4.094 18 H 0.085 0.915 19 C -0.116 4.116 20 C 0.160 3.840 21 N -0.746 5.746 22 C -0.332 4.332 23 H 0.064 0.936 24 C -0.046 4.046 25 N -0.945 5.945 26 Si 1.083 2.917 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.288 1.288 30 C 0.109 3.891 31 C -0.110 4.110 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.020 0.980 47 H 0.018 0.982 48 H 0.366 0.634 49 H 0.255 0.745 50 H 0.078 0.922 51 H 0.071 0.929 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.140 24.377 20.343 35.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.131 4.131 5 C -0.144 4.144 6 C -0.048 4.048 7 C -0.102 4.102 8 H 0.145 0.855 9 C -0.180 4.180 10 C -0.194 4.194 11 H 0.142 0.858 12 C 0.346 3.654 13 O -0.420 6.420 14 N -0.347 5.347 15 C -0.022 4.022 16 C -0.165 4.165 17 C -0.114 4.114 18 H 0.104 0.896 19 C -0.155 4.155 20 C 0.033 3.967 21 N -0.392 5.392 22 C -0.463 4.463 23 H 0.082 0.918 24 C -0.244 4.244 25 N -0.591 5.591 26 Si 0.914 3.086 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.214 1.214 30 C -0.013 4.013 31 C -0.128 4.128 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.036 0.964 48 H 0.199 0.801 49 H 0.066 0.934 50 H 0.097 0.903 51 H 0.089 0.911 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.736 23.246 19.395 33.670 hybrid contribution -0.722 0.799 1.148 1.574 sum -15.457 24.045 20.543 35.201 Atomic orbital electron populations 1.20810 0.91080 1.02938 1.02421 1.19926 0.96174 0.93024 0.99251 1.21056 0.94329 0.97517 1.01410 1.21108 0.94296 0.97893 0.99813 1.21049 1.00013 0.91911 1.01394 1.19091 0.93309 0.92837 0.99554 1.21086 0.91883 0.96945 1.00288 0.85516 1.23137 0.95538 1.03744 0.95627 1.22305 1.07730 0.95665 0.93681 0.85751 1.19235 0.78200 0.89238 0.78719 1.90705 1.45466 1.49231 1.56568 1.48415 1.43673 1.10031 1.32573 1.22110 0.93861 0.92260 0.93999 1.22751 0.99202 0.96394 0.98167 1.22333 0.98653 0.95604 0.94771 0.89626 1.21686 0.99216 0.96742 0.97820 1.20557 0.94103 0.91475 0.90577 1.42388 1.64153 1.21842 1.10788 1.20070 1.31399 1.06930 0.87934 0.91759 1.25794 0.98685 0.93375 1.06535 1.70851 1.49012 1.32558 1.06638 0.83187 0.76522 0.74862 0.74000 1.22304 1.22168 1.21357 1.22366 1.01593 0.83957 0.93346 1.20898 0.93330 0.97858 1.00690 0.91084 0.91490 0.91380 0.86133 0.85955 0.85884 0.87655 0.87288 0.91433 0.91243 0.90078 0.89547 0.91613 0.91646 0.96190 0.96429 0.80059 0.93378 0.90341 0.91116 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.01 36.00 0.36 -0.26 16 2 C -0.08 -0.63 5.88 -104.62 -0.62 -1.24 16 3 C -0.13 -0.87 9.70 -39.58 -0.38 -1.25 16 4 C -0.11 -0.77 10.05 -39.58 -0.40 -1.16 16 5 C -0.13 -0.92 9.30 -39.58 -0.37 -1.29 16 6 C -0.05 -0.40 5.61 -104.62 -0.59 -0.99 16 7 C -0.08 -0.74 5.55 -91.78 -0.51 -1.25 16 8 H 0.13 1.29 7.67 -51.93 -0.40 0.89 16 9 C -0.14 -1.06 9.56 -26.74 -0.26 -1.31 16 10 C -0.17 -1.57 5.17 -91.78 -0.47 -2.05 16 11 H 0.12 0.97 7.67 -51.93 -0.40 0.57 16 12 C 0.56 6.96 7.63 -10.98 -0.08 6.88 16 13 O -0.54 -8.70 16.51 5.56 0.09 -8.61 16 14 N -0.61 -7.09 3.33 -170.51 -0.57 -7.65 16 15 C 0.10 0.90 6.31 -3.06 -0.02 0.88 16 16 C -0.13 -1.31 5.90 -24.89 -0.15 -1.46 16 17 C -0.09 -1.15 3.01 -88.46 -0.27 -1.41 16 18 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.12 -1.78 4.84 -26.73 -0.13 -1.91 16 20 C 0.16 3.18 6.16 -4.04 -0.02 3.16 16 21 N -0.75 -19.07 5.60 -59.91 -0.34 -19.41 16 22 C -0.33 -9.54 9.99 -15.06 -0.15 -9.69 16 23 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.05 -1.37 5.50 -17.43 -0.10 -1.46 16 25 N -0.94 -29.56 13.70 55.49 0.76 -28.80 16 26 Si 1.08 26.15 29.92 -169.99 -5.09 21.07 16 27 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 C 0.11 1.35 6.38 -2.52 -0.02 1.33 16 31 C -0.11 -0.92 9.39 -39.58 -0.37 -1.30 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.12 0.69 6.02 -52.49 -0.32 0.37 16 38 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 0.58 6.17 -51.93 -0.32 0.26 16 40 H 0.07 0.53 7.97 -51.93 -0.41 0.11 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.00 7.97 -51.93 -0.41 0.59 16 46 H 0.02 0.40 7.75 -51.93 -0.40 -0.01 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.37 9.54 6.50 -40.82 -0.27 9.27 16 49 H 0.25 7.85 6.77 -40.82 -0.28 7.57 16 50 H 0.08 1.04 8.04 -51.93 -0.42 0.63 16 51 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 52 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 419.98 15.07 6.33 6.33 Total: -1.00 -34.91 419.98 -12.07 -46.98 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.72 Total: 5.89 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -4.54 Total: -15.79 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.14 Total: -55.86 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -5.09 Total: 21.07 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.91 -12.07 -46.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733669182.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.679 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds