Wall clock time and date at job start Wed Apr 1 2020 02:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38254 * 120.00213 * 2 1 4 4 C 1.38208 * 120.00210 * 180.02562 * 3 2 1 5 5 C 1.38259 * 119.99757 * 359.95343 * 4 3 2 6 6 C 1.38208 * 120.00213 * 0.02846 * 5 4 3 7 7 C 1.50699 * 120.00206 * 179.97438 * 6 5 4 8 8 H 1.08996 * 115.56663 * 154.30504 * 7 6 5 9 9 C 1.52997 * 117.49977 * 8.61120 * 7 6 5 10 10 C 1.52996 * 60.00093 * 252.51731 * 9 7 6 11 11 H 1.08998 * 117.50200 * 107.51757 * 10 9 7 12 12 C 1.50700 * 117.49599 * 252.50981 * 10 9 7 13 13 O 1.21276 * 120.00160 * 68.60683 * 12 10 9 14 14 N 1.34780 * 120.00219 * 248.61032 * 12 10 9 15 15 C 1.47026 * 125.64391 * 359.97438 * 14 12 10 16 16 C 1.54330 * 107.26840 * 178.97562 * 15 14 12 17 17 C 1.55155 * 102.94292 * 337.81024 * 16 15 14 18 18 H 1.09001 * 111.00015 * 277.42463 * 17 16 15 19 19 C 1.52994 * 111.03735 * 153.59095 * 17 16 15 20 20 C 1.52993 * 109.47427 * 72.78240 * 19 17 16 21 21 N 1.46503 * 109.47698 * 179.97438 * 20 19 17 22 22 C 1.36936 * 120.00431 * 180.02562 * 21 20 19 23 23 H 1.08001 * 120.00098 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99700 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99474 * 179.97438 * 24 22 21 26 26 Si 1.86792 * 120.00467 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46924 * 90.00004 * 26 24 22 28 28 H 1.48498 * 109.47418 * 210.00409 * 26 24 22 29 29 H 1.48500 * 109.47169 * 330.00462 * 26 24 22 30 30 C 1.47420 * 125.65180 * 180.02562 * 14 12 10 31 31 C 1.38207 * 119.99769 * 180.22946 * 2 1 3 32 32 H 1.08997 * 109.47222 * 89.99987 * 1 2 3 33 33 H 1.09002 * 109.47338 * 210.00279 * 1 2 3 34 34 H 1.09003 * 109.46845 * 330.00393 * 1 2 3 35 35 H 1.08006 * 119.99896 * 359.97438 * 3 2 1 36 36 H 1.08003 * 119.99961 * 179.97438 * 4 3 2 37 37 H 1.08002 * 119.99941 * 179.97438 * 5 4 3 38 38 H 1.09001 * 117.50056 * 145.02153 * 9 7 6 39 39 H 1.09005 * 117.51729 * 359.97438 * 9 7 6 40 40 H 1.08998 * 109.88351 * 298.39161 * 15 14 12 41 41 H 1.08998 * 109.88379 * 59.55951 * 15 14 12 42 42 H 1.08998 * 110.71700 * 96.16950 * 16 15 14 43 43 H 1.08991 * 110.72004 * 219.44241 * 16 15 14 44 44 H 1.09009 * 109.47250 * 192.78319 * 19 17 16 45 45 H 1.08996 * 109.47106 * 312.78207 * 19 17 16 46 46 H 1.09005 * 109.47340 * 299.99926 * 20 19 17 47 47 H 1.09006 * 109.47077 * 59.99859 * 20 19 17 48 48 H 0.97001 * 119.99238 * 359.97438 * 21 20 19 49 49 H 0.97003 * 119.99628 * 179.97438 * 25 24 22 50 50 H 1.08997 * 110.36858 * 322.93289 * 30 14 12 51 51 H 1.08997 * 110.36396 * 85.14276 * 30 14 12 52 52 H 1.08006 * 120.00404 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 6 3.5807 -1.1970 0.0003 7 6 4.3341 -2.5021 0.0002 8 1 3.8021 -3.3524 0.4268 9 6 5.8494 -2.4431 0.2028 10 6 5.2744 -2.7748 -1.1756 11 1 5.3484 -2.0104 -1.9491 12 6 5.3941 -4.1984 -1.6552 13 8 4.7582 -5.0768 -1.1121 14 7 6.2079 -4.4956 -2.6876 15 6 7.0318 -3.5332 -3.4337 16 6 7.8110 -4.3287 -4.5022 17 6 7.8121 -5.7708 -3.9296 18 1 8.6075 -5.8989 -3.1954 19 6 7.9317 -6.8062 -5.0495 20 6 9.3570 -6.7941 -5.6054 21 7 9.4717 -7.7861 -6.6774 22 6 10.6644 -7.9562 -7.3283 23 1 11.5206 -7.3587 -7.0516 24 6 10.7728 -8.8957 -8.3443 25 7 11.9191 -9.0588 -8.9702 26 14 9.2919 -9.9285 -8.8234 27 1 8.5258 -9.2316 -9.8877 28 1 9.7506 -11.2481 -9.3268 29 1 8.4219 -10.1268 -7.6364 30 6 6.4185 -5.8392 -3.2566 31 6 2.1981 -1.1969 -0.0048 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8901 0.5138 35 1 1.6584 2.1327 -0.0004 36 1 4.1205 2.1326 -0.0010 37 1 5.3517 -0.0001 -0.0009 38 1 6.3143 -3.2545 0.7629 39 1 6.3018 -1.4603 0.3359 40 1 6.3927 -2.7932 -3.9154 41 1 7.7293 -3.0395 -2.7571 42 1 7.2942 -4.2950 -5.4612 43 1 8.8289 -3.9510 -4.5980 44 1 7.7041 -7.7965 -4.6547 45 1 7.2289 -6.5625 -5.8463 46 1 9.5846 -5.8039 -6.0003 47 1 10.0598 -7.0379 -4.8087 48 1 8.7028 -8.3229 -6.9256 49 1 11.9950 -9.7156 -9.6800 50 1 6.4151 -6.5904 -2.4668 51 1 5.6491 -6.0631 -3.9954 52 1 1.6581 -2.1323 -0.0090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733669183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:08 Heat of formation + Delta-G solvation = 16.696725 kcal Electronic energy + Delta-G solvation = -28203.714188 eV Core-core repulsion = 24361.473395 eV Total energy + Delta-G solvation = -3842.240793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.74489 -39.81607 -38.28731 -36.63963 -35.34735 -33.08350 -32.89012 -31.34238 -31.07011 -29.74170 -28.07310 -27.29690 -25.19223 -24.00383 -23.25666 -22.84781 -22.41383 -21.30860 -20.32388 -20.15538 -19.16737 -17.85628 -17.56242 -17.01470 -16.31061 -16.02699 -15.46808 -15.30933 -14.86187 -14.65329 -14.44237 -14.20285 -14.16166 -13.88438 -13.68818 -13.51445 -13.22292 -12.99124 -12.83314 -12.72442 -12.68384 -12.58145 -12.29412 -12.23968 -11.80969 -11.71455 -11.59569 -11.34848 -11.29394 -11.05418 -10.89422 -10.84915 -10.71023 -10.52114 -10.42395 -10.12657 -10.05103 -9.59518 -9.14118 -8.91190 -8.89524 -8.83458 -7.23353 -5.77246 -3.12727 0.88019 0.99257 2.24521 2.68836 3.21416 3.37488 3.40409 3.45349 3.65128 3.98940 4.23726 4.37191 4.41533 4.44096 4.49263 4.53193 4.59083 4.68148 4.70336 4.70781 4.79489 4.93537 5.02433 5.03672 5.18072 5.20551 5.22835 5.29932 5.30603 5.40565 5.46149 5.48176 5.51234 5.58031 5.61209 5.68652 5.69870 5.74218 5.75515 5.81518 5.95504 5.99182 6.07524 6.10456 6.13324 6.18990 6.24085 6.28946 6.60906 6.71728 6.75962 7.29683 7.94102 7.99144 8.41935 9.21252 9.93781 10.13533 11.41197 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.001560 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.743984 B =17948.911824 C =18143.953983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.048 4.048 7 C -0.084 4.084 8 H 0.127 0.873 9 C -0.143 4.143 10 C -0.173 4.173 11 H 0.125 0.875 12 C 0.558 3.442 13 O -0.542 6.542 14 N -0.614 5.614 15 C 0.100 3.900 16 C -0.128 4.128 17 C -0.094 4.094 18 H 0.087 0.913 19 C -0.120 4.120 20 C 0.159 3.841 21 N -0.758 5.758 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 C 0.109 3.891 31 C -0.110 4.110 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.028 0.972 47 H 0.025 0.975 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.078 0.922 51 H 0.070 0.930 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.131 22.891 21.129 37.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.131 4.131 5 C -0.144 4.144 6 C -0.048 4.048 7 C -0.102 4.102 8 H 0.145 0.855 9 C -0.180 4.180 10 C -0.194 4.194 11 H 0.142 0.858 12 C 0.346 3.654 13 O -0.420 6.420 14 N -0.347 5.347 15 C -0.023 4.023 16 C -0.166 4.166 17 C -0.113 4.113 18 H 0.106 0.894 19 C -0.158 4.158 20 C 0.032 3.968 21 N -0.404 5.404 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 C -0.013 4.013 31 C -0.128 4.128 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.046 0.954 47 H 0.043 0.957 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.096 0.904 51 H 0.088 0.912 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.280 22.469 21.411 37.076 hybrid contribution -0.844 -0.734 -0.643 1.290 sum -21.124 21.736 20.768 36.742 Atomic orbital electron populations 1.20810 0.91093 1.02853 1.02484 1.19923 0.96163 0.93032 0.99275 1.21054 0.94335 0.97514 1.01409 1.21110 0.94292 0.97906 0.99790 1.21052 1.00029 0.91907 1.01363 1.19092 0.93303 0.92846 0.99555 1.21086 0.91919 0.96932 1.00301 0.85530 1.23139 0.95487 1.03774 0.95597 1.22305 1.07736 0.95644 0.93690 0.85759 1.19238 0.78317 0.89252 0.78564 1.90703 1.45362 1.49185 1.56754 1.48414 1.43779 1.10043 1.32470 1.22120 0.93763 0.92230 0.94163 1.22762 1.01184 0.94750 0.97890 1.22321 0.96134 0.95010 0.97861 0.89442 1.21721 0.99264 0.98192 0.96635 1.20603 0.92771 0.92900 0.90556 1.42728 1.11444 1.44589 1.41595 1.19067 0.88970 1.17415 1.12021 0.89249 1.24681 0.96581 0.99373 0.98585 1.69707 1.23693 1.38023 1.26842 0.86530 0.83168 0.80416 0.78308 1.21088 1.21715 1.20325 1.22359 0.97049 0.84145 0.97747 1.20894 0.93335 0.97844 1.00720 0.91058 0.91415 0.91509 0.86137 0.85943 0.85862 0.87628 0.87277 0.91450 0.91166 0.90088 0.89371 0.91546 0.91600 0.95427 0.95679 0.80701 0.93071 0.90360 0.91198 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.08 -0.61 5.88 -104.62 -0.62 -1.23 16 3 C -0.13 -0.85 9.70 -39.59 -0.38 -1.23 16 4 C -0.11 -0.75 10.05 -39.58 -0.40 -1.15 16 5 C -0.13 -0.89 9.30 -39.58 -0.37 -1.26 16 6 C -0.05 -0.39 5.61 -104.62 -0.59 -0.98 16 7 C -0.08 -0.72 5.56 -91.77 -0.51 -1.23 16 8 H 0.13 1.25 7.67 -51.93 -0.40 0.85 16 9 C -0.14 -1.02 9.56 -26.73 -0.26 -1.28 16 10 C -0.17 -1.51 5.17 -91.77 -0.47 -1.99 16 11 H 0.12 0.93 7.73 -51.93 -0.40 0.53 16 12 C 0.56 6.73 7.63 -10.98 -0.08 6.64 16 13 O -0.54 -8.48 16.51 5.56 0.09 -8.39 16 14 N -0.61 -6.75 3.33 -170.52 -0.57 -7.32 16 15 C 0.10 0.85 6.28 -3.06 -0.02 0.83 16 16 C -0.13 -1.22 5.91 -24.89 -0.15 -1.37 16 17 C -0.09 -1.05 3.00 -88.47 -0.27 -1.32 16 18 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.12 -1.68 4.84 -26.74 -0.13 -1.81 16 20 C 0.16 2.93 6.16 -4.04 -0.02 2.90 16 21 N -0.76 -17.96 5.41 -59.91 -0.32 -18.29 16 22 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 23 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 24 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 25 N -0.93 -29.45 13.97 55.49 0.78 -28.67 16 26 Si 0.89 22.17 27.74 -169.99 -4.71 17.46 16 27 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 30 C 0.11 1.27 6.37 -2.53 -0.02 1.25 16 31 C -0.11 -0.90 9.39 -39.58 -0.37 -1.27 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 36 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.12 0.67 6.02 -52.49 -0.32 0.35 16 38 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.11 0.56 6.18 -51.93 -0.32 0.24 16 40 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 45 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 46 H 0.03 0.51 7.75 -51.93 -0.40 0.10 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.36 8.33 5.53 -40.82 -0.23 8.10 16 49 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 50 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 51 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 52 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 418.70 15.07 6.31 6.31 Total: -1.00 -34.46 418.70 -11.77 -46.23 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.80 Total: 4.51 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -4.54 Total: -11.85 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.12 Total: -54.28 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.46 -11.77 -46.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733669183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.931 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds