Wall clock time and date at job start Wed Apr 1 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38253 * 119.99852 * 2 1 4 4 C 1.38219 * 119.99901 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00203 * 359.94784 * 4 3 2 6 6 C 1.38222 * 119.99710 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.99709 * 179.97438 * 6 5 4 8 8 H 1.09001 * 115.56180 * 154.31514 * 7 6 5 9 9 C 1.52998 * 117.50047 * 8.62279 * 7 6 5 10 10 C 1.52997 * 60.00365 * 252.50704 * 9 7 6 11 11 H 1.09003 * 117.49792 * 107.50334 * 10 9 7 12 12 C 1.50700 * 117.50376 * 252.51407 * 10 9 7 13 13 O 1.21276 * 120.00083 * 68.60379 * 12 10 9 14 14 N 1.34780 * 119.99528 * 248.60909 * 12 10 9 15 15 C 1.46500 * 120.00357 * 359.97438 * 14 12 10 16 16 C 1.46503 * 119.99889 * 179.97438 * 14 12 10 17 17 H 1.09002 * 109.46913 * 359.97438 * 16 14 12 18 18 C 1.52997 * 109.47269 * 119.99501 * 16 14 12 19 19 N 1.46505 * 109.47212 * 304.99931 * 18 16 14 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00145 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00180 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47586 * 89.99558 * 24 22 20 26 26 H 1.48505 * 109.47293 * 210.00502 * 24 22 20 27 27 H 1.48505 * 109.46772 * 329.99807 * 24 22 20 28 28 C 1.52997 * 109.46834 * 239.99883 * 16 14 12 29 29 C 1.53005 * 117.49482 * 248.61877 * 28 16 14 30 30 C 1.53001 * 117.49715 * 179.97438 * 28 16 14 31 31 C 1.38219 * 119.99891 * 180.15597 * 2 1 3 32 32 H 1.09005 * 109.46881 * 90.00645 * 1 2 3 33 33 H 1.09003 * 109.46769 * 210.00083 * 1 2 3 34 34 H 1.08991 * 109.47368 * 330.00912 * 1 2 3 35 35 H 1.07992 * 120.00190 * 359.97438 * 3 2 1 36 36 H 1.07996 * 120.00094 * 179.97438 * 4 3 2 37 37 H 1.07994 * 120.00121 * 180.02562 * 5 4 3 38 38 H 1.09003 * 117.49790 * 145.02147 * 9 7 6 39 39 H 1.08999 * 117.50202 * 0.02562 * 9 7 6 40 40 H 1.08992 * 109.47332 * 270.00886 * 15 14 12 41 41 H 1.09008 * 109.46640 * 30.00741 * 15 14 12 42 42 H 1.08994 * 109.47047 * 149.99739 * 15 14 12 43 43 H 1.09002 * 109.47153 * 184.99923 * 18 16 14 44 44 H 1.09001 * 109.46832 * 65.00114 * 18 16 14 45 45 H 0.96996 * 119.99606 * 0.02562 * 19 18 16 46 46 H 0.97010 * 119.99864 * 180.02562 * 23 22 20 47 47 H 1.08998 * 115.55361 * 34.32677 * 28 16 14 48 48 H 1.08998 * 117.50133 * 0.02562 * 29 28 16 49 49 H 1.09003 * 117.49745 * 145.02540 * 29 28 16 50 50 H 1.09003 * 117.50184 * 214.97545 * 30 28 16 51 51 H 1.09001 * 117.49699 * 359.97411 * 30 28 16 52 52 H 1.07996 * 120.00584 * 0.05142 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2718 0.0000 0.0000 6 6 3.5807 -1.1970 0.0016 7 6 4.3342 -2.5020 0.0017 8 1 3.8024 -3.3521 0.4291 9 6 5.8497 -2.4428 0.2033 10 6 5.2738 -2.7754 -1.1745 11 1 5.3471 -2.0113 -1.9485 12 6 5.3931 -4.1993 -1.6534 13 8 4.7575 -5.0773 -1.1094 14 7 6.2063 -4.4969 -2.6863 15 6 6.9737 -3.4362 -3.3437 16 6 6.3228 -5.8812 -3.1515 17 1 5.6832 -6.5231 -2.5457 18 6 5.8893 -5.9651 -4.6164 19 7 4.5399 -5.4126 -4.7588 20 6 3.9393 -5.3811 -5.9890 21 1 4.4602 -5.7639 -6.8542 22 6 2.6611 -4.8571 -6.1240 23 7 2.0835 -4.8272 -7.3064 24 14 1.7603 -4.1944 -4.6277 25 1 2.0663 -2.7505 -4.4650 26 1 0.2975 -4.3729 -4.8111 27 1 2.2012 -4.9332 -3.4172 28 6 7.7760 -6.3420 -3.0224 29 6 8.5576 -6.5846 -4.3152 30 6 8.1056 -7.7706 -3.4598 31 6 2.1981 -1.1970 -0.0033 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5136 35 1 1.6583 2.1326 -0.0004 36 1 4.1204 2.1326 -0.0010 37 1 5.3517 0.0000 0.0000 38 1 6.3149 -3.2539 0.7635 39 1 6.3017 -1.4599 0.3364 40 1 6.3881 -3.0180 -4.1622 41 1 7.2013 -2.6517 -2.6218 42 1 7.9029 -3.8497 -3.7358 43 1 5.8909 -7.0070 -4.9367 44 1 6.5827 -5.3941 -5.2337 45 1 4.0723 -5.0685 -3.9818 46 1 1.1903 -4.4607 -7.4008 47 1 8.3236 -5.9375 -2.1712 48 1 8.0366 -6.4156 -5.2576 49 1 9.6197 -6.3397 -4.3146 50 1 8.8705 -8.3056 -2.8969 51 1 7.2870 -8.3823 -3.8392 52 1 1.6582 -2.1323 -0.0066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734314252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:21 Heat of formation + Delta-G solvation = 59.300718 kcal Electronic energy + Delta-G solvation = -30435.441678 eV Core-core repulsion = 26595.048333 eV Total energy + Delta-G solvation = -3840.393345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.48282 -39.54268 -38.13108 -36.39636 -35.06760 -34.12883 -32.62932 -31.37760 -30.91219 -28.72885 -27.02921 -26.58730 -25.07045 -23.86622 -23.35340 -22.45394 -22.17924 -21.69862 -20.16740 -19.46180 -18.65881 -17.54829 -17.44236 -16.62724 -16.39341 -15.64004 -15.32751 -15.12068 -14.97753 -14.44522 -14.12837 -13.91752 -13.84515 -13.79719 -13.54029 -13.24038 -12.92719 -12.64561 -12.55343 -12.48668 -12.36584 -12.30352 -12.00193 -11.99301 -11.66760 -11.57069 -11.40178 -11.18598 -11.03751 -10.84079 -10.78269 -10.70166 -10.52718 -10.40160 -10.12724 -9.83910 -9.57346 -9.52701 -8.87200 -8.83134 -8.59584 -8.38068 -7.20391 -5.75473 -3.10104 1.18664 1.29578 2.63709 3.07201 3.41444 3.48474 3.52645 3.52979 3.90372 3.95708 4.34855 4.59611 4.63214 4.72300 4.73072 4.75967 4.79917 4.93130 4.99517 5.01795 5.05210 5.12376 5.19739 5.23486 5.32881 5.35131 5.47786 5.49576 5.52897 5.58874 5.60383 5.69616 5.70105 5.73042 5.78382 5.84519 5.89613 5.91450 5.99084 6.02086 6.05609 6.06127 6.20839 6.28455 6.35507 6.36210 6.48916 6.55245 6.60789 6.85511 6.91134 7.59270 8.00257 8.37817 8.44021 9.23604 9.96736 10.16926 11.42699 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009128 B = 0.004039 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.796486 B = 6930.349259 C = 9189.321301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.046 4.046 7 C -0.086 4.086 8 H 0.126 0.874 9 C -0.143 4.143 10 C -0.174 4.174 11 H 0.127 0.873 12 C 0.543 3.457 13 O -0.541 6.541 14 N -0.592 5.592 15 C 0.079 3.921 16 C 0.158 3.842 17 H 0.103 0.897 18 C 0.148 3.852 19 N -0.752 5.752 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.009 3.991 23 N -0.934 5.934 24 Si 0.873 3.127 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.272 1.272 28 C -0.159 4.159 29 C -0.183 4.183 30 C -0.172 4.172 31 C -0.109 4.109 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.363 0.637 46 H 0.259 0.741 47 H 0.103 0.897 48 H 0.108 0.892 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.099 0.901 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.286 9.318 16.730 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.046 4.046 7 C -0.104 4.104 8 H 0.144 0.856 9 C -0.180 4.180 10 C -0.195 4.195 11 H 0.144 0.856 12 C 0.331 3.669 13 O -0.418 6.418 14 N -0.324 5.324 15 C -0.064 4.064 16 C 0.054 3.946 17 H 0.121 0.879 18 C 0.020 3.980 19 N -0.397 5.397 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.187 4.187 23 N -0.582 5.582 24 Si 0.703 3.297 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.198 1.198 28 C -0.178 4.178 29 C -0.220 4.220 30 C -0.210 4.210 31 C -0.127 4.127 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.196 0.804 46 H 0.069 0.931 47 H 0.121 0.879 48 H 0.127 0.873 49 H 0.108 0.892 50 H 0.110 0.890 51 H 0.117 0.883 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.908 8.816 16.751 21.365 hybrid contribution -0.685 0.583 0.705 1.143 sum 9.223 9.399 17.455 21.866 Atomic orbital electron populations 1.20817 0.91139 1.02699 1.02651 1.19923 0.96186 0.93042 0.99165 1.21017 0.94322 0.97399 1.01647 1.21070 0.94272 0.97783 1.00120 1.21010 0.99881 0.91886 1.01613 1.19101 0.93311 0.92929 0.99259 1.21083 0.91775 0.96912 1.00655 0.85563 1.23095 0.95559 1.03410 0.95966 1.22384 1.07274 0.96359 0.93518 0.85557 1.19563 0.78676 0.89096 0.79586 1.90680 1.44962 1.48982 1.57223 1.47567 1.43955 1.08480 1.32362 1.21777 0.96428 0.90202 0.98010 1.20902 0.94208 0.82177 0.97289 0.87888 1.21094 0.87735 0.97352 0.91809 1.42662 1.14228 1.75105 1.07741 1.19026 0.98018 1.34283 0.85923 0.89217 1.24602 0.96987 1.01129 0.96003 1.69702 1.15458 1.51608 1.21385 0.86685 0.79656 0.79368 0.83993 1.21017 1.21637 1.19822 1.22538 0.96297 0.99985 0.99010 1.23222 0.99991 1.02734 0.96072 1.22962 1.03519 0.90760 1.03755 1.20936 0.93473 0.97958 1.00378 0.90936 0.91414 0.91562 0.86202 0.86055 0.85935 0.87825 0.87486 0.91712 0.91494 0.90767 0.94667 0.94755 0.80374 0.93109 0.87858 0.87338 0.89180 0.88992 0.88299 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.08 -1.00 5.88 -104.62 -0.62 -1.62 16 3 C -0.13 -1.36 9.70 -39.58 -0.38 -1.75 16 4 C -0.11 -1.19 10.05 -39.58 -0.40 -1.59 16 5 C -0.13 -1.40 9.30 -39.58 -0.37 -1.76 16 6 C -0.05 -0.60 5.61 -104.62 -0.59 -1.18 16 7 C -0.09 -1.14 5.55 -91.77 -0.51 -1.65 16 8 H 0.13 1.85 7.67 -51.93 -0.40 1.45 16 9 C -0.14 -1.50 9.56 -26.73 -0.26 -1.76 16 10 C -0.17 -2.40 4.43 -91.77 -0.41 -2.80 16 11 H 0.13 1.66 7.26 -51.93 -0.38 1.28 16 12 C 0.54 9.33 7.16 -10.98 -0.08 9.25 16 13 O -0.54 -11.17 15.59 5.56 0.09 -11.08 16 14 N -0.59 -9.39 2.24 -173.94 -0.39 -9.78 16 15 C 0.08 1.01 9.17 59.85 0.55 1.56 16 16 C 0.16 2.61 2.59 -67.93 -0.18 2.44 16 17 H 0.10 1.97 6.90 -51.93 -0.36 1.61 16 18 C 0.15 2.89 4.19 -4.04 -0.02 2.87 16 19 N -0.75 -18.65 5.24 -59.91 -0.31 -18.97 16 20 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 21 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 22 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 23 N -0.93 -29.95 13.97 55.49 0.78 -29.18 16 24 Si 0.87 23.54 27.74 -169.99 -4.71 18.83 16 25 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 26 H -0.29 -7.84 7.11 56.52 0.40 -7.43 16 27 H -0.27 -7.36 6.52 56.52 0.37 -7.00 16 28 C -0.16 -2.03 4.96 -90.62 -0.45 -2.48 16 29 C -0.18 -2.12 9.51 -26.70 -0.25 -2.37 16 30 C -0.17 -2.01 9.94 -26.70 -0.27 -2.28 16 31 C -0.11 -1.47 9.39 -39.58 -0.37 -1.85 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.09 6.02 -52.49 -0.32 0.77 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.11 0.86 6.18 -51.93 -0.32 0.54 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.67 6.64 -51.92 -0.34 0.33 16 42 H 0.07 0.83 7.21 -51.93 -0.37 0.45 16 43 H 0.04 0.70 7.44 -51.93 -0.39 0.31 16 44 H 0.03 0.65 6.31 -51.93 -0.33 0.32 16 45 H 0.36 9.31 4.93 -40.82 -0.20 9.11 16 46 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 47 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.11 1.40 5.80 -51.93 -0.30 1.10 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.10 1.24 7.66 -51.93 -0.40 0.84 16 52 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 414.06 15.07 6.24 6.24 Total: -1.00 -35.20 414.06 -11.14 -46.34 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -8.34 Total: 12.38 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -4.48 Total: -14.79 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.07 Total: -57.92 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -4.71 Total: 18.83 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.20 -11.14 -46.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734314252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.641 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds