Wall clock time and date at job start Wed Apr 1 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 119.99922 * 2 1 4 4 C 1.38215 * 119.99983 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99789 * 359.95576 * 4 3 2 6 6 C 1.38213 * 120.00321 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00381 * 180.02562 * 6 5 4 8 8 H 1.09002 * 115.56796 * 154.31134 * 7 6 5 9 9 C 1.53005 * 117.50009 * 8.62014 * 7 6 5 10 10 C 1.52994 * 60.00109 * 252.51284 * 9 7 6 11 11 H 1.08997 * 117.50388 * 107.51302 * 10 9 7 12 12 C 1.50706 * 117.49569 * 252.50902 * 10 9 7 13 13 O 1.21280 * 120.00000 * 68.61013 * 12 10 9 14 14 N 1.34778 * 119.99989 * 248.60615 * 12 10 9 15 15 C 1.46502 * 119.99900 * 0.02562 * 14 12 10 16 16 C 1.46494 * 120.00229 * 179.97438 * 14 12 10 17 17 H 1.09000 * 109.47008 * 0.02562 * 16 14 12 18 18 C 1.52996 * 109.47509 * 240.00540 * 16 14 12 19 19 N 1.46498 * 109.47059 * 54.99655 * 18 16 14 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 C 1.53004 * 109.47171 * 120.00011 * 16 14 12 29 29 C 1.52999 * 117.50239 * 248.75303 * 28 16 14 30 30 C 1.52991 * 117.50016 * 180.08804 * 28 16 14 31 31 C 1.38216 * 119.99963 * 180.16546 * 2 1 3 32 32 H 1.09004 * 109.47087 * 89.99737 * 1 2 3 33 33 H 1.08995 * 109.47081 * 210.00016 * 1 2 3 34 34 H 1.08994 * 109.47253 * 330.00193 * 1 2 3 35 35 H 1.07999 * 119.99890 * 0.02562 * 3 2 1 36 36 H 1.07994 * 120.00110 * 179.97438 * 4 3 2 37 37 H 1.08001 * 120.00023 * 180.02562 * 5 4 3 38 38 H 1.09000 * 117.50326 * 145.01680 * 9 7 6 39 39 H 1.09006 * 117.49168 * 0.02562 * 9 7 6 40 40 H 1.09000 * 109.47068 * 269.99797 * 15 14 12 41 41 H 1.09005 * 109.46921 * 29.99883 * 15 14 12 42 42 H 1.09003 * 109.47098 * 149.99702 * 15 14 12 43 43 H 1.09004 * 109.47066 * 294.99922 * 18 16 14 44 44 H 1.08994 * 109.46974 * 175.00070 * 18 16 14 45 45 H 0.97001 * 120.00384 * 0.02562 * 19 18 16 46 46 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 47 47 H 1.08999 * 115.54667 * 34.41944 * 28 16 14 48 48 H 1.09001 * 117.49349 * 359.97438 * 29 28 16 49 49 H 1.08994 * 117.50060 * 145.01793 * 29 28 16 50 50 H 1.08996 * 117.50071 * 214.98306 * 30 28 16 51 51 H 1.09002 * 117.50279 * 359.97438 * 30 28 16 52 52 H 1.07996 * 119.99710 * 0.04830 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5807 -1.1969 0.0013 7 6 4.3341 -2.5020 0.0023 8 1 3.8021 -3.3520 0.4296 9 6 5.8495 -2.4428 0.2051 10 6 5.2746 -2.7757 -1.1731 11 1 5.3486 -2.0120 -1.9472 12 6 5.3943 -4.1998 -1.6514 13 8 4.7583 -5.0777 -1.1076 14 7 6.2082 -4.4978 -2.6836 15 6 6.9768 -3.4374 -3.3402 16 6 6.3250 -5.8822 -3.1483 17 1 5.6845 -6.5238 -2.5432 18 6 7.7781 -6.3430 -3.0180 19 7 8.2297 -6.1500 -1.6378 20 6 9.5044 -6.4992 -1.2793 21 1 10.1782 -6.9127 -2.0152 22 6 9.9306 -6.3217 0.0298 23 7 9.1092 -5.8182 0.9266 24 14 11.6696 -6.7973 0.5186 25 1 12.6416 -6.0128 -0.2845 26 1 11.8740 -6.5114 1.9614 27 1 11.8754 -8.2464 0.2677 28 6 5.8926 -5.9666 -4.6135 29 6 4.5930 -6.7117 -4.9248 30 6 5.9414 -7.3397 -5.2865 31 6 2.1981 -1.1970 -0.0035 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3633 0.8899 0.5138 35 1 1.6583 2.1326 0.0004 36 1 4.1205 2.1326 -0.0010 37 1 5.3517 0.0000 -0.0001 38 1 6.3144 -3.2537 0.7659 39 1 6.3013 -1.4597 0.3382 40 1 6.3921 -3.0188 -4.1593 41 1 7.2041 -2.6531 -2.6181 42 1 7.9061 -3.8514 -3.7316 43 1 8.4062 -5.7590 -3.6908 44 1 7.8492 -7.3988 -3.2793 45 1 7.6245 -5.7789 -0.9768 46 1 9.4071 -5.6938 1.8413 47 1 6.1333 -5.0973 -5.2255 48 1 4.0464 -7.1421 -4.0858 49 1 3.9790 -6.3329 -5.7418 50 1 6.2138 -7.3738 -6.3413 51 1 6.2820 -8.1829 -4.6856 52 1 1.6581 -2.1322 -0.0069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734314256.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:25 Heat of formation + Delta-G solvation = 52.422241 kcal Electronic energy + Delta-G solvation = -30008.024913 eV Core-core repulsion = 26167.333295 eV Total energy + Delta-G solvation = -3840.691619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.27717 -39.41004 -37.79231 -36.17585 -35.07421 -33.93871 -32.61773 -31.24335 -30.80605 -28.36403 -27.02741 -26.47344 -24.74028 -23.73925 -23.25348 -22.37127 -22.12505 -21.51348 -20.02272 -19.49815 -18.58741 -17.43065 -17.07635 -16.55928 -16.28107 -15.36715 -15.10479 -14.92444 -14.71525 -14.60532 -14.06472 -13.94153 -13.87873 -13.63237 -13.21617 -13.13050 -12.99249 -12.60264 -12.54151 -12.37024 -12.28576 -12.13372 -11.79159 -11.72863 -11.51259 -11.41857 -11.31801 -11.03826 -10.94291 -10.81889 -10.67866 -10.55202 -10.31803 -10.24033 -10.14944 -9.78873 -9.62240 -9.34694 -8.83925 -8.82065 -8.53475 -8.18505 -6.87183 -5.71341 -3.00196 1.22317 1.30710 2.90547 3.24817 3.45183 3.49743 3.50758 3.61948 3.97288 4.21365 4.50022 4.59718 4.70184 4.79085 4.83690 4.94359 5.00553 5.03885 5.06908 5.09725 5.14814 5.20279 5.28485 5.38806 5.40483 5.42775 5.52789 5.59246 5.59758 5.65958 5.69058 5.75143 5.79383 5.88861 5.96043 5.96705 6.02068 6.04808 6.08910 6.17111 6.25221 6.28198 6.31016 6.36757 6.42376 6.49996 6.55669 6.63366 6.76661 6.93346 7.04538 7.71771 7.80902 8.46469 8.62629 9.57956 10.16537 10.52428 11.50747 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.003122 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.165894 B = 8966.708643 C =11081.368546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.129 4.129 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.039 4.039 7 C -0.093 4.093 8 H 0.126 0.874 9 C -0.135 4.135 10 C -0.171 4.171 11 H 0.120 0.880 12 C 0.550 3.450 13 O -0.540 6.540 14 N -0.590 5.590 15 C 0.083 3.917 16 C 0.163 3.837 17 H 0.100 0.900 18 C 0.148 3.852 19 N -0.727 5.727 20 C -0.240 4.240 21 H 0.068 0.932 22 C -0.012 4.012 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.287 1.287 28 C -0.157 4.157 29 C -0.179 4.179 30 C -0.171 4.171 31 C -0.111 4.111 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.021 0.979 44 H 0.028 0.972 45 H 0.386 0.614 46 H 0.254 0.746 47 H 0.104 0.896 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.098 0.902 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.112 12.966 -8.132 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.040 4.040 7 C -0.111 4.111 8 H 0.143 0.857 9 C -0.172 4.172 10 C -0.192 4.192 11 H 0.138 0.862 12 C 0.338 3.662 13 O -0.418 6.418 14 N -0.322 5.322 15 C -0.060 4.060 16 C 0.059 3.941 17 H 0.118 0.882 18 C 0.019 3.981 19 N -0.372 5.372 20 C -0.371 4.371 21 H 0.086 0.914 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.214 1.214 28 C -0.177 4.177 29 C -0.216 4.216 30 C -0.208 4.208 31 C -0.129 4.129 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.039 0.961 44 H 0.046 0.954 45 H 0.220 0.780 46 H 0.064 0.936 47 H 0.122 0.878 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.111 0.889 51 H 0.117 0.883 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.272 12.441 -7.839 20.492 hybrid contribution 1.019 -0.029 0.336 1.074 sum -13.253 12.411 -7.503 19.646 Atomic orbital electron populations 1.20784 0.91307 1.02696 1.02253 1.19890 0.95981 0.93098 0.99738 1.20989 0.94301 0.97325 1.02120 1.21086 0.94244 0.97845 1.00056 1.21107 1.00245 0.91886 1.01106 1.19178 0.93238 0.93138 0.98401 1.21097 0.92440 0.96476 1.01125 0.85658 1.23181 0.94387 1.04058 0.95608 1.22277 1.07418 0.95961 0.93564 0.86241 1.19478 0.78546 0.89058 0.79093 1.90668 1.45974 1.48946 1.56175 1.47437 1.43484 1.08154 1.33085 1.21696 0.96289 0.90754 0.97303 1.20901 0.98795 0.82700 0.91665 0.88250 1.20925 0.90659 0.97466 0.89030 1.42287 1.13228 1.76683 1.04970 1.19153 0.89302 1.34815 0.93857 0.91407 1.24720 0.97940 1.02016 0.96116 1.69670 1.34772 1.50534 1.02701 0.86301 0.84599 0.78178 0.77265 1.21393 1.21737 1.21376 1.22534 1.01884 0.96279 0.96968 1.23007 0.90768 1.04507 1.03314 1.22924 1.00599 0.96430 1.00885 1.20896 0.93431 0.97714 1.00895 0.91263 0.91490 0.91685 0.86396 0.86136 0.85732 0.86468 0.87779 0.93565 0.91057 0.90403 0.96115 0.95402 0.77957 0.93572 0.87798 0.88712 0.89238 0.88888 0.88327 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.52 16 3 C -0.13 -1.26 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.15 10.05 -39.58 -0.40 -1.54 16 5 C -0.13 -1.42 9.30 -39.58 -0.37 -1.79 16 6 C -0.04 -0.50 5.61 -104.63 -0.59 -1.08 16 7 C -0.09 -1.33 5.56 -91.77 -0.51 -1.84 16 8 H 0.13 1.99 7.67 -51.93 -0.40 1.59 16 9 C -0.14 -2.01 9.56 -26.73 -0.26 -2.27 16 10 C -0.17 -2.54 4.43 -91.77 -0.41 -2.95 16 11 H 0.12 1.51 7.26 -51.93 -0.38 1.13 16 12 C 0.55 10.12 7.16 -10.98 -0.08 10.04 16 13 O -0.54 -11.84 15.59 5.56 0.09 -11.75 16 14 N -0.59 -10.02 2.24 -173.93 -0.39 -10.41 16 15 C 0.08 1.14 8.98 59.85 0.54 1.68 16 16 C 0.16 2.87 2.42 -67.93 -0.16 2.71 16 17 H 0.10 2.03 6.66 -51.93 -0.35 1.68 16 18 C 0.15 3.02 5.27 -4.04 -0.02 3.00 16 19 N -0.73 -18.77 5.43 -59.91 -0.33 -19.09 16 20 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 24 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 C -0.16 -2.18 5.21 -90.62 -0.47 -2.65 16 29 C -0.18 -2.26 10.18 -26.69 -0.27 -2.53 16 30 C -0.17 -2.12 9.80 -26.70 -0.26 -2.38 16 31 C -0.11 -1.32 9.39 -39.58 -0.37 -1.69 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.12 1.28 6.02 -52.49 -0.32 0.96 16 38 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16 39 H 0.10 1.29 6.18 -51.93 -0.32 0.97 16 40 H 0.05 0.51 8.07 -51.93 -0.42 0.09 16 41 H 0.07 0.94 6.64 -51.93 -0.34 0.60 16 42 H 0.08 1.13 6.53 -51.93 -0.34 0.79 16 43 H 0.02 0.42 6.88 -51.93 -0.36 0.06 16 44 H 0.03 0.58 7.47 -51.93 -0.39 0.19 16 45 H 0.39 10.79 7.06 -40.82 -0.29 10.50 16 46 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.10 1.32 7.43 -51.93 -0.39 0.93 16 48 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 49 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.10 1.30 7.67 -51.93 -0.40 0.90 16 52 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 419.84 15.07 6.33 6.33 Total: -1.00 -33.06 419.84 -11.56 -44.62 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -8.44 Total: 14.56 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -4.51 Total: -14.31 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.01 Total: -57.00 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.06 -11.56 -44.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734314256.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.044 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds