Wall clock time and date at job start Wed Apr 1 2020 01:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00596 * 2 1 4 4 C 1.38214 * 120.00308 * 180.27490 * 3 2 1 5 5 C 1.38256 * 120.00052 * 359.74398 * 4 3 2 6 6 C 1.50698 * 120.00139 * 179.97438 * 5 4 3 7 7 H 1.08999 * 115.54914 * 154.35659 * 6 5 4 8 8 C 1.52998 * 117.49688 * 8.63985 * 6 5 4 9 9 C 1.53000 * 60.00114 * 252.51068 * 8 6 5 10 10 H 1.09009 * 117.49553 * 107.48565 * 9 8 6 11 11 C 1.50696 * 117.50325 * 252.50995 * 9 8 6 12 12 O 1.21279 * 119.99845 * 68.62250 * 11 9 8 13 13 N 1.34773 * 120.00040 * 248.62036 * 11 9 8 14 14 C 1.46506 * 119.99904 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47084 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46953 * 294.99671 * 15 14 13 17 17 N 1.46494 * 109.47411 * 54.99612 * 15 14 13 18 18 C 1.36938 * 120.00264 * 205.00152 * 17 15 14 19 19 H 1.08005 * 119.99580 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00342 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99761 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00183 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47438 * 59.99837 * 22 20 18 24 24 H 1.48504 * 109.47254 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46898 * 299.99460 * 22 20 18 26 26 C 1.53001 * 109.47022 * 175.00014 * 15 14 13 27 27 C 1.53000 * 117.49738 * 248.61888 * 26 15 14 28 28 C 1.53002 * 117.49697 * 179.97438 * 26 15 14 29 29 C 1.38216 * 119.99493 * 0.02562 * 5 4 3 30 30 C 1.38218 * 119.99818 * 179.76321 * 2 1 3 31 31 C 1.50703 * 119.99968 * 0.02562 * 30 2 1 32 32 H 1.08995 * 109.47734 * 270.23743 * 1 2 3 33 33 H 1.09002 * 109.46829 * 30.23687 * 1 2 3 34 34 H 1.09000 * 109.47496 * 150.23001 * 1 2 3 35 35 H 1.08000 * 119.99553 * 359.97438 * 3 2 1 36 36 H 1.08001 * 120.00174 * 179.72549 * 4 3 2 37 37 H 1.08991 * 117.50188 * 0.02562 * 8 6 5 38 38 H 1.09001 * 117.49647 * 145.02240 * 8 6 5 39 39 H 0.96993 * 120.00358 * 0.02562 * 13 11 9 40 40 H 1.09005 * 109.46916 * 300.00123 * 14 13 11 41 41 H 1.08992 * 109.47099 * 59.99895 * 14 13 11 42 42 H 0.97001 * 120.00114 * 25.00824 * 17 15 14 43 43 H 0.97005 * 120.00087 * 180.02562 * 21 20 18 44 44 H 1.08996 * 115.55194 * 34.32984 * 26 15 14 45 45 H 1.09005 * 117.49794 * 359.97438 * 27 26 15 46 46 H 1.08996 * 117.49996 * 145.02614 * 27 26 15 47 47 H 1.08997 * 117.49967 * 214.97419 * 28 26 15 48 48 H 1.09004 * 117.49719 * 0.02562 * 28 26 15 49 49 H 1.08009 * 119.99396 * 179.97438 * 29 5 4 50 50 H 1.09002 * 109.47152 * 269.72462 * 31 30 2 51 51 H 1.09001 * 109.46980 * 149.72562 * 31 30 2 52 52 H 1.09004 * 109.47113 * 29.72543 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0057 5 6 4.2717 -0.0002 -0.0061 6 6 5.7787 -0.0003 -0.0130 7 1 6.2507 -0.8859 0.4125 8 6 6.4861 1.3419 0.1846 9 6 6.4798 0.6760 -1.1929 10 1 5.8509 1.1209 -1.9641 11 6 7.7703 0.0671 -1.6773 12 8 8.2152 -0.9222 -1.1349 13 7 8.4300 0.6218 -2.7134 14 6 9.6849 0.0302 -3.1840 15 6 10.2241 0.8465 -4.3603 16 1 9.5356 0.7695 -5.2019 17 7 10.3533 2.2504 -3.9621 18 6 10.3131 3.2376 -4.9102 19 1 10.1857 2.9812 -5.9516 20 6 10.4361 4.5678 -4.5329 21 7 10.5909 4.8802 -3.2637 22 14 10.3805 5.9145 -5.8262 23 1 9.0789 5.8627 -6.5391 24 1 10.5337 7.2378 -5.1699 25 1 11.4855 5.7136 -6.7977 26 6 11.5946 0.3048 -4.7715 27 6 12.8127 1.1928 -4.5099 28 6 12.3046 0.9922 -5.9395 29 6 3.5805 -1.1971 -0.0013 30 6 2.1980 -1.1970 0.0049 31 6 1.4444 -2.5021 0.0098 32 1 -0.3634 0.0043 1.0276 33 1 -0.3633 0.8879 -0.5175 34 1 -0.3634 -0.8920 -0.5102 35 1 1.6584 2.1326 -0.0004 36 1 4.1205 2.1324 -0.0102 37 1 5.8615 2.2248 0.3200 38 1 7.4237 1.3396 0.7405 39 1 8.0744 1.4132 -3.1470 40 1 10.4148 0.0345 -2.3743 41 1 9.5049 -0.9956 -3.5053 42 1 10.4675 2.4806 -3.0267 43 1 10.6764 5.8098 -3.0000 44 1 11.7249 -0.7724 -4.6673 45 1 12.6377 2.1632 -4.0453 46 1 13.7448 0.7000 -4.2334 47 1 12.9024 0.3675 -6.6031 48 1 11.7954 1.8307 -6.4148 49 1 4.1205 -2.1325 -0.0021 50 1 1.2666 -2.8152 1.0386 51 1 2.0316 -3.2625 -0.5051 52 1 0.4901 -2.3725 -0.5007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752520460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:33 Heat of formation + Delta-G solvation = 38.379566 kcal Electronic energy + Delta-G solvation = -28948.340383 eV Core-core repulsion = 25107.039829 eV Total energy + Delta-G solvation = -3841.300555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.30076 -39.34409 -37.76495 -36.60434 -34.42533 -33.24485 -32.97987 -32.28148 -30.85855 -28.39026 -27.94917 -26.62372 -24.61314 -23.39284 -22.86715 -22.27698 -22.02393 -21.44377 -20.00435 -19.46024 -18.95304 -17.54720 -17.09457 -16.31592 -15.87147 -15.55428 -15.26535 -14.90629 -14.72610 -14.57548 -14.47021 -14.08785 -13.88750 -13.41757 -13.30969 -13.24805 -13.04859 -12.88892 -12.87748 -12.38072 -12.25461 -12.14044 -12.04080 -11.85035 -11.30567 -11.21314 -11.17176 -11.01085 -10.89029 -10.86033 -10.57841 -10.53368 -10.40978 -10.16399 -9.72636 -9.62575 -9.43533 -9.17043 -8.99259 -8.86051 -8.60891 -8.43777 -7.08662 -5.85311 -3.15444 1.13923 1.26299 2.78320 3.36391 3.38307 3.43313 3.44176 3.62676 4.05886 4.47845 4.48409 4.58979 4.62930 4.70763 4.78713 4.83918 4.90584 5.00269 5.06855 5.16631 5.25182 5.28051 5.37189 5.40461 5.45068 5.46966 5.55608 5.57477 5.59431 5.64752 5.72269 5.74559 5.84367 5.93540 5.95268 5.98808 6.04813 6.05472 6.06410 6.09593 6.34107 6.37808 6.46257 6.48913 6.55341 6.64685 6.74847 6.89045 6.91401 7.00390 7.27022 7.63328 7.96729 8.31802 8.59550 9.44115 9.97883 10.34287 11.36012 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.002274 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.515060 B =12312.617088 C =13647.123200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.114 4.114 4 C -0.120 4.120 5 C -0.049 4.049 6 C -0.088 4.088 7 H 0.125 0.875 8 C -0.141 4.141 9 C -0.172 4.172 10 H 0.123 0.877 11 C 0.540 3.460 12 O -0.556 6.556 13 N -0.706 5.706 14 C 0.120 3.880 15 C 0.192 3.808 16 H 0.057 0.943 17 N -0.717 5.717 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.007 4.007 21 N -0.928 5.928 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.178 4.178 27 C -0.163 4.163 28 C -0.176 4.176 29 C -0.107 4.107 30 C -0.087 4.087 31 C -0.117 4.117 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.411 0.589 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.085 0.915 45 H 0.119 0.881 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.102 0.898 49 H 0.123 0.877 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.297 -10.811 6.358 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.132 4.132 4 C -0.138 4.138 5 C -0.049 4.049 6 C -0.106 4.106 7 H 0.143 0.857 8 C -0.178 4.178 9 C -0.193 4.193 10 H 0.141 0.859 11 C 0.326 3.674 12 O -0.435 6.435 13 N -0.357 5.357 14 C -0.005 4.005 15 C 0.081 3.919 16 H 0.075 0.925 17 N -0.358 5.358 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.200 4.200 27 C -0.200 4.200 28 C -0.213 4.213 29 C -0.125 4.125 30 C -0.087 4.087 31 C -0.173 4.173 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.248 0.752 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.137 0.863 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.121 0.879 49 H 0.141 0.859 50 H 0.088 0.912 51 H 0.084 0.916 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.986 -11.379 6.574 20.694 hybrid contribution 0.148 1.352 -0.774 1.565 sum -15.838 -10.027 5.800 19.622 Atomic orbital electron populations 1.20839 0.91484 1.02745 1.02173 1.19741 0.95864 0.92726 1.01155 1.20975 0.94041 0.97402 1.00780 1.21079 0.94127 0.97869 1.00744 1.19117 0.93020 0.93236 0.99560 1.21056 0.90240 0.98384 1.00920 0.85723 1.23103 1.02805 0.95845 0.96084 1.22321 0.97679 1.05715 0.93601 0.85872 1.19517 0.84548 0.83487 0.79814 1.90650 1.68885 1.26417 1.57598 1.45895 1.24368 1.31900 1.33534 1.21580 0.84992 0.96325 0.97594 1.19992 0.92521 0.85557 0.93839 0.92533 1.42457 1.86922 0.98803 1.07657 1.19111 1.42571 0.86095 0.89328 0.91159 1.24704 1.02647 0.97124 0.95934 1.69646 1.56189 1.17547 1.14177 0.86348 0.77830 0.81700 0.80766 1.21321 1.21796 1.21274 1.23071 0.96051 0.96502 1.04329 1.22910 0.95229 1.02893 0.98956 1.22850 1.04016 1.03153 0.91267 1.20852 0.93246 0.97719 1.00663 1.19714 0.93539 0.94873 1.00565 1.20854 1.00063 0.94145 1.02264 0.91331 0.91706 0.91267 0.86094 0.85688 0.87478 0.87644 0.75230 0.91731 0.91912 0.77911 0.93407 0.89640 0.86329 0.91295 0.91022 0.87940 0.85929 0.91238 0.91572 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.60 36.00 0.35 -0.45 16 2 C -0.09 -0.91 5.88 -104.63 -0.62 -1.52 16 3 C -0.11 -1.13 9.70 -39.58 -0.38 -1.51 16 4 C -0.12 -1.30 9.30 -39.58 -0.37 -1.67 16 5 C -0.05 -0.57 5.61 -104.62 -0.59 -1.16 16 6 C -0.09 -1.09 5.55 -91.77 -0.51 -1.60 16 7 H 0.12 1.68 7.67 -51.93 -0.40 1.28 16 8 C -0.14 -1.71 9.56 -26.73 -0.26 -1.97 16 9 C -0.17 -2.33 5.82 -91.77 -0.53 -2.86 16 10 H 0.12 1.53 8.14 -51.92 -0.42 1.11 16 11 C 0.54 8.99 7.61 -10.99 -0.08 8.91 16 12 O -0.56 -10.80 16.26 5.56 0.09 -10.71 16 13 N -0.71 -11.74 5.39 -60.29 -0.32 -12.07 16 14 C 0.12 2.04 5.22 -4.04 -0.02 2.02 16 15 C 0.19 3.51 2.86 -67.93 -0.19 3.32 16 16 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 17 N -0.72 -15.79 3.08 -53.43 -0.16 -15.95 16 18 C -0.24 -5.93 8.15 -15.06 -0.12 -6.05 16 19 H 0.07 1.72 6.91 -52.48 -0.36 1.36 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.93 -26.02 13.06 55.49 0.72 -25.29 16 22 Si 0.90 21.21 29.55 -169.99 -5.02 16.19 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.18 -3.10 5.71 -90.62 -0.52 -3.62 16 27 C -0.16 -3.05 9.74 -26.71 -0.26 -3.31 16 28 C -0.18 -3.14 9.87 -26.71 -0.26 -3.41 16 29 C -0.11 -1.18 9.39 -39.58 -0.37 -1.55 16 30 C -0.09 -0.86 5.88 -104.62 -0.62 -1.48 16 31 C -0.12 -0.86 9.61 36.01 0.35 -0.51 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.07 0.42 5.94 -51.93 -0.31 0.11 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 1.21 6.02 -52.49 -0.32 0.89 16 37 H 0.11 1.11 6.18 -51.93 -0.32 0.79 16 38 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.41 6.90 8.14 -40.82 -0.33 6.57 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.39 9.38 7.80 -40.82 -0.32 9.06 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 45 H 0.12 2.66 6.68 -51.93 -0.35 2.31 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.10 2.04 6.23 -51.93 -0.32 1.72 16 49 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 52 H 0.07 0.43 5.94 -51.93 -0.31 0.12 16 LS Contribution 418.65 15.07 6.31 6.31 Total: -1.00 -28.82 418.65 -11.88 -40.69 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -8.38 Total: 19.57 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -5.11 Total: -18.73 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.24 Total: -53.31 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -28.82 -11.88 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752520460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.074 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds