Wall clock time and date at job start Wed Apr 1 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47199 * 2 1 4 4 C 1.38257 * 120.00015 * 265.18499 * 3 2 1 5 5 C 1.38216 * 119.99708 * 180.21020 * 4 3 2 6 6 C 1.38257 * 119.99936 * 359.85378 * 5 4 3 7 7 C 1.38210 * 120.00436 * 359.96593 * 6 5 4 8 8 C 1.38217 * 119.99803 * 84.99930 * 3 2 1 9 9 C 1.50701 * 120.00184 * 0.02562 * 8 3 2 10 10 H 1.09002 * 115.55512 * 334.03380 * 9 8 3 11 11 C 1.52999 * 117.49712 * 188.34663 * 9 8 3 12 12 C 1.53000 * 117.50101 * 119.72376 * 9 8 3 13 13 H 1.08995 * 117.51623 * 0.02562 * 12 9 8 14 14 C 1.50696 * 117.49911 * 214.97960 * 12 9 8 15 15 O 1.21281 * 120.00126 * 359.97438 * 14 12 9 16 16 N 1.34779 * 120.00174 * 179.97438 * 14 12 9 17 17 C 1.46501 * 120.00080 * 179.97438 * 16 14 12 18 18 H 1.08999 * 109.47004 * 34.99969 * 17 16 14 19 19 C 1.52993 * 109.46854 * 154.99972 * 17 16 14 20 20 N 1.46496 * 109.47551 * 304.99739 * 19 17 16 21 21 C 1.36934 * 120.00548 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99288 * 0.02562 * 21 20 19 23 23 C 1.38805 * 120.00389 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00257 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48499 * 109.46981 * 150.00382 * 25 23 21 29 29 C 1.52999 * 109.46955 * 275.00117 * 17 16 14 30 30 C 1.53006 * 117.50035 * 128.74859 * 29 17 16 31 31 C 1.52997 * 117.50274 * 60.08748 * 29 17 16 32 32 H 1.08994 * 109.46995 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46740 * 299.99684 * 1 2 3 34 34 H 1.09000 * 109.47191 * 59.99838 * 1 2 3 35 35 H 1.08996 * 109.47192 * 240.00049 * 2 1 3 36 36 H 1.09000 * 109.47191 * 120.00162 * 2 1 3 37 37 H 1.07999 * 120.00108 * 0.04930 * 4 3 2 38 38 H 1.08000 * 119.99933 * 179.83985 * 5 4 3 39 39 H 1.08006 * 119.99805 * 179.97438 * 6 5 4 40 40 H 1.07991 * 120.00280 * 179.97438 * 7 6 5 41 41 H 1.09001 * 117.49423 * 145.02055 * 11 9 8 42 42 H 1.08994 * 117.52109 * 359.97438 * 11 9 8 43 43 H 0.96998 * 119.99698 * 359.97438 * 16 14 12 44 44 H 1.09004 * 109.46862 * 184.99937 * 19 17 16 45 45 H 1.09004 * 109.46998 * 65.00415 * 19 17 16 46 46 H 0.96999 * 119.99694 * 0.02562 * 20 19 17 47 47 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 48 48 H 1.08995 * 115.54898 * 274.41666 * 29 17 16 49 49 H 1.08998 * 117.49390 * 359.97438 * 30 29 17 50 50 H 1.08993 * 117.49485 * 145.01771 * 30 29 17 51 51 H 1.08995 * 117.50487 * 214.98196 * 31 29 17 52 52 H 1.09004 * 117.49899 * 359.97438 * 31 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3576 2.0390 -1.1931 5 6 2.8224 3.3407 -1.1927 6 6 2.9593 4.0254 0.0006 7 6 2.6307 3.4087 1.1930 8 6 2.1643 2.1071 1.1925 9 6 1.8065 1.4344 2.4927 10 1 1.0716 0.6326 2.4205 11 6 1.7858 2.3004 3.7538 12 6 2.9122 1.2873 3.5398 13 1 3.8985 1.6774 3.2888 14 6 2.9021 0.0450 4.3927 15 8 2.0383 -0.7917 4.2352 16 7 3.8529 -0.1365 5.3305 17 6 3.8427 -1.3440 6.1600 18 1 3.4895 -2.1884 5.5681 19 6 5.2595 -1.6299 6.6617 20 7 6.1743 -1.7130 5.5205 21 6 7.5049 -1.9626 5.7262 22 1 7.8798 -2.0987 6.7299 23 6 8.3717 -2.0408 4.6450 24 7 9.6506 -2.2813 4.8427 25 14 7.7230 -1.8062 2.9090 26 1 7.3083 -3.1195 2.3538 27 1 6.5551 -0.8894 2.9367 28 1 8.7900 -1.2231 2.0565 29 6 2.9111 -1.1337 7.3552 30 6 1.8472 -2.2015 7.6182 31 6 1.4397 -0.8355 7.0603 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.8934 -0.5139 0.8900 37 1 2.2508 1.5040 -2.1252 38 1 3.0789 3.8228 -2.1244 39 1 3.3230 5.0424 0.0009 40 1 2.7380 3.9434 2.1251 41 1 1.0374 2.0682 4.5115 42 1 2.0314 3.3566 3.6436 43 1 4.5440 0.5325 5.4562 44 1 5.2688 -2.5753 7.2044 45 1 5.5788 -0.8267 7.3257 46 1 5.8376 -1.5904 4.6191 47 1 10.2563 -2.3362 4.0870 48 1 3.3596 -0.6463 8.2209 49 1 1.8108 -3.0535 6.9393 50 1 1.5957 -2.4162 8.6567 51 1 0.9201 -0.1522 7.7320 52 1 1.1355 -0.7886 6.0146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754449139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:31 Heat of formation + Delta-G solvation = 42.454113 kcal Electronic energy + Delta-G solvation = -30143.031896 eV Core-core repulsion = 26301.908027 eV Total energy + Delta-G solvation = -3841.123869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.56900 -39.60897 -37.68321 -36.12969 -35.18417 -34.35434 -33.46793 -31.37983 -30.73911 -29.50634 -28.60614 -24.91340 -24.15690 -23.94669 -23.52682 -22.17923 -21.34402 -21.22910 -20.59308 -20.14100 -19.90292 -17.88437 -17.41415 -16.60389 -16.30154 -15.71273 -15.38235 -15.16385 -14.95046 -14.61383 -14.31455 -14.14788 -13.99111 -13.67579 -13.61479 -13.35687 -13.24266 -12.81354 -12.67524 -12.42463 -12.26806 -12.01429 -11.95711 -11.89893 -11.57114 -11.34128 -11.28310 -11.09905 -11.03355 -10.97365 -10.88744 -10.68865 -10.54514 -10.23361 -10.17114 -9.99288 -9.65641 -9.62495 -8.96975 -8.93782 -8.76922 -8.62215 -7.29851 -5.81292 -3.17642 1.12579 1.22663 2.58236 3.17948 3.34283 3.39063 3.43444 3.49070 3.89969 4.04013 4.41534 4.55383 4.56498 4.63037 4.69002 4.71756 4.76627 4.83459 4.98503 5.02353 5.08654 5.11908 5.20307 5.23531 5.31685 5.34053 5.35629 5.43484 5.48229 5.49427 5.58575 5.70929 5.74254 5.77566 5.79927 5.83601 5.83953 5.89820 5.90475 6.00934 6.04661 6.12541 6.27027 6.34573 6.36228 6.38491 6.42398 6.53902 6.55828 6.81034 6.84099 7.72972 7.93910 8.36934 8.40141 9.15912 9.88158 10.07378 11.36833 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008144 B = 0.003825 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.318669 B = 7319.361199 C = 9497.604957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.068 4.068 4 C -0.118 4.118 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.051 4.051 9 C -0.085 4.085 10 H 0.130 0.870 11 C -0.144 4.144 12 C -0.177 4.177 13 H 0.125 0.875 14 C 0.546 3.454 15 O -0.544 6.544 16 N -0.706 5.706 17 C 0.165 3.835 18 H 0.088 0.912 19 C 0.153 3.847 20 N -0.755 5.755 21 C -0.247 4.247 22 H 0.091 0.909 23 C 0.008 3.992 24 N -0.932 5.932 25 Si 0.882 3.118 26 H -0.284 1.284 27 H -0.278 1.278 28 H -0.290 1.290 29 C -0.162 4.162 30 C -0.170 4.170 31 C -0.185 4.185 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.405 0.595 44 H 0.044 0.956 45 H 0.033 0.967 46 H 0.363 0.637 47 H 0.260 0.740 48 H 0.105 0.895 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.083 0.917 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.329 12.008 -6.050 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.136 4.136 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.051 4.051 9 C -0.103 4.103 10 H 0.148 0.852 11 C -0.181 4.181 12 C -0.198 4.198 13 H 0.142 0.858 14 C 0.332 3.668 15 O -0.423 6.423 16 N -0.355 5.355 17 C 0.060 3.940 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.401 5.401 21 C -0.376 4.376 22 H 0.109 0.891 23 C -0.188 4.188 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.211 1.211 27 H -0.204 1.204 28 H -0.217 1.217 29 C -0.182 4.182 30 C -0.208 4.208 31 C -0.222 4.222 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.240 0.760 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.196 0.804 47 H 0.070 0.930 48 H 0.123 0.877 49 H 0.112 0.888 50 H 0.109 0.891 51 H 0.101 0.899 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.688 11.339 -6.028 24.350 hybrid contribution 0.315 0.526 -1.181 1.330 sum -20.373 11.866 -7.209 24.654 Atomic orbital electron populations 1.21728 0.94610 1.01849 1.01960 1.20611 0.96297 0.92566 1.03464 1.19738 0.98519 0.96166 0.92395 1.21031 0.99935 0.95177 0.97409 1.21125 0.99880 0.94858 0.98085 1.21086 1.00593 0.99964 0.92511 1.21048 0.99483 0.94566 0.98358 1.18984 0.99527 0.93741 0.92815 1.21111 1.00408 1.01681 0.87109 0.85245 1.23104 0.99225 0.96358 0.99429 1.22380 0.97108 0.97979 1.02375 0.85753 1.19494 0.81203 0.86439 0.79633 1.90597 1.37515 1.44861 1.69354 1.45951 1.29918 1.23581 1.36059 1.20875 0.95993 0.87348 0.89777 0.89418 1.20897 0.86080 0.99445 0.91064 1.42695 1.05987 1.88218 1.03232 1.19039 0.82145 1.41195 0.95260 0.89090 1.24644 0.95261 1.01637 0.97242 1.69699 1.02319 1.55747 1.30193 0.86598 0.77811 0.78107 0.86267 1.21065 1.20395 1.21668 1.22617 0.90815 1.04640 1.00098 1.22900 1.03213 0.93139 1.01542 1.23253 0.96719 0.98547 1.03655 0.92278 0.92386 0.92815 0.91119 0.90127 0.86105 0.86200 0.86123 0.85857 0.87764 0.87556 0.75993 0.93793 0.94891 0.80432 0.92998 0.87723 0.88773 0.89115 0.89876 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.74 37.16 0.36 -0.98 16 2 C -0.09 -0.99 5.38 -27.88 -0.15 -1.14 16 3 C -0.07 -0.78 5.13 -104.62 -0.54 -1.31 16 4 C -0.12 -1.21 9.68 -39.58 -0.38 -1.60 16 5 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 6 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 7 C -0.12 -1.20 9.30 -39.58 -0.37 -1.56 16 8 C -0.05 -0.58 5.61 -104.62 -0.59 -1.16 16 9 C -0.08 -0.97 4.65 -91.77 -0.43 -1.40 16 10 H 0.13 1.61 5.48 -51.93 -0.28 1.32 16 11 C -0.14 -1.39 9.56 -26.73 -0.26 -1.64 16 12 C -0.18 -2.17 5.82 -91.77 -0.53 -2.70 16 13 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 14 C 0.55 8.11 6.95 -10.99 -0.08 8.03 16 15 O -0.54 -9.25 13.29 5.56 0.07 -9.18 16 16 N -0.71 -10.50 4.50 -53.81 -0.24 -10.74 16 17 C 0.16 2.60 2.43 -67.93 -0.17 2.43 16 18 H 0.09 1.56 7.33 -51.93 -0.38 1.18 16 19 C 0.15 2.83 5.80 -4.05 -0.02 2.81 16 20 N -0.76 -17.52 5.24 -59.91 -0.31 -17.84 16 21 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 22 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 23 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 24 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 25 Si 0.88 22.36 27.74 -169.99 -4.71 17.65 16 26 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 C -0.16 -2.16 5.36 -90.62 -0.49 -2.65 16 30 C -0.17 -2.12 10.18 -26.69 -0.27 -2.39 16 31 C -0.18 -2.37 9.74 -26.69 -0.26 -2.63 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.55 7.17 -51.93 -0.37 0.18 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.08 1.01 6.95 -51.93 -0.36 0.65 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.12 1.04 6.02 -52.49 -0.32 0.73 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.11 0.82 6.18 -51.93 -0.32 0.50 16 43 H 0.41 5.72 8.60 -40.82 -0.35 5.37 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.36 8.44 5.19 -40.82 -0.21 8.23 16 47 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 48 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 49 H 0.09 1.23 8.05 -51.93 -0.42 0.82 16 50 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.12 1.71 5.02 -51.93 -0.26 1.45 16 LS Contribution 414.70 15.07 6.25 6.25 Total: -1.00 -32.32 414.70 -11.74 -44.06 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -8.36 Total: 16.09 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -5.21 Total: -17.94 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.22 Total: -56.92 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.32 -11.74 -44.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754449139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.512 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds