Wall clock time and date at job start Wed Apr 1 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46888 * 2 1 4 4 C 1.38257 * 120.00017 * 265.18860 * 3 2 1 5 5 C 1.38210 * 120.00157 * 180.21242 * 4 3 2 6 6 C 1.38258 * 119.99676 * 359.84586 * 5 4 3 7 7 C 1.38211 * 120.00368 * 359.96537 * 6 5 4 8 8 C 1.38212 * 119.99951 * 84.99511 * 3 2 1 9 9 C 1.50699 * 120.00427 * 0.02562 * 8 3 2 10 10 H 1.09002 * 115.55636 * 334.01779 * 9 8 3 11 11 C 1.53000 * 117.50321 * 188.33380 * 9 8 3 12 12 C 1.52997 * 117.50247 * 119.70480 * 9 8 3 13 13 H 1.08999 * 117.49685 * 0.02562 * 12 9 8 14 14 C 1.50696 * 117.52180 * 214.96914 * 12 9 8 15 15 O 1.21290 * 119.99779 * 359.97438 * 14 12 9 16 16 N 1.34773 * 120.00368 * 179.97438 * 14 12 9 17 17 C 1.46501 * 120.00348 * 180.02562 * 16 14 12 18 18 H 1.08994 * 109.46933 * 325.00345 * 17 16 14 19 19 C 1.53000 * 109.47396 * 205.00157 * 17 16 14 20 20 N 1.46507 * 109.46870 * 55.00091 * 19 17 16 21 21 C 1.36933 * 119.99708 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00186 * 359.97438 * 21 20 19 23 23 C 1.38810 * 119.99638 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00224 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 120.00046 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46631 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47022 * 119.99982 * 25 23 21 28 28 H 1.48493 * 109.47090 * 240.00343 * 25 23 21 29 29 C 1.53001 * 109.46955 * 85.00365 * 17 16 14 30 30 C 1.53002 * 117.49879 * 8.62419 * 29 17 16 31 31 C 1.53003 * 117.49855 * 300.00129 * 29 17 16 32 32 H 1.09000 * 109.47428 * 60.00412 * 1 2 3 33 33 H 1.09002 * 109.46997 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47418 * 300.00243 * 1 2 3 35 35 H 1.08993 * 109.47126 * 240.00037 * 2 1 3 36 36 H 1.08995 * 109.47097 * 119.99236 * 2 1 3 37 37 H 1.08003 * 119.99530 * 0.03845 * 4 3 2 38 38 H 1.08001 * 120.00125 * 179.83265 * 5 4 3 39 39 H 1.08006 * 119.99461 * 179.97438 * 6 5 4 40 40 H 1.07998 * 120.00253 * 179.97438 * 7 6 5 41 41 H 1.08990 * 117.49990 * 145.01584 * 11 9 8 42 42 H 1.09004 * 117.49237 * 359.97438 * 11 9 8 43 43 H 0.97001 * 119.99539 * 0.02562 * 16 14 12 44 44 H 1.08994 * 109.47003 * 175.00386 * 19 17 16 45 45 H 1.09003 * 109.47020 * 295.00667 * 19 17 16 46 46 H 0.97001 * 119.99552 * 0.02562 * 20 19 17 47 47 H 0.97004 * 119.99916 * 179.97438 * 24 23 21 48 48 H 1.08998 * 115.55352 * 154.33080 * 29 17 16 49 49 H 1.09003 * 117.50108 * 0.02562 * 30 29 17 50 50 H 1.08998 * 117.50288 * 145.01832 * 30 29 17 51 51 H 1.09004 * 117.50004 * 214.97563 * 31 29 17 52 52 H 1.09001 * 117.50084 * 0.02562 * 31 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3574 2.0392 -1.1931 5 6 2.8222 3.3408 -1.1928 6 6 2.9591 4.0256 0.0005 7 6 2.6304 3.4088 1.1929 8 6 2.1642 2.1072 1.1924 9 6 1.8063 1.4347 2.4926 10 1 1.0713 0.6330 2.4206 11 6 1.7858 2.3006 3.7538 12 6 2.9121 1.2873 3.5397 13 1 3.8984 1.6772 3.2882 14 6 2.9020 0.0453 4.3930 15 8 2.0380 -0.7914 4.2360 16 7 3.8531 -0.1360 5.3306 17 6 3.8437 -1.3437 6.1597 18 1 2.8137 -1.6383 6.3607 19 6 4.5603 -1.0605 7.4815 20 7 3.9453 0.0993 8.1318 21 6 4.4227 0.5419 9.3365 22 1 5.2523 0.0357 9.8074 23 6 3.8396 1.6405 9.9528 24 7 2.8281 2.2570 9.3791 25 14 4.4904 2.2439 11.5966 26 1 5.6239 1.3857 12.0252 27 1 4.9567 3.6470 11.4594 28 1 3.4083 2.1788 12.6114 29 6 4.5629 -2.4746 5.4217 30 6 5.3033 -2.1174 4.1313 31 6 3.9952 -2.9085 4.0688 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5137 0.8900 37 1 2.2508 1.5040 -2.1252 38 1 3.0787 3.8228 -2.1246 39 1 3.3227 5.0426 0.0007 40 1 2.7377 3.9436 2.1250 41 1 1.0374 2.0686 4.5115 42 1 2.0316 3.3568 3.6431 43 1 4.5439 0.5333 5.4563 44 1 4.4764 -1.9297 8.1337 45 1 5.6125 -0.8524 7.2870 46 1 3.1994 0.5532 7.7092 47 1 2.4204 3.0245 9.8100 48 1 4.9993 -3.2467 6.0554 49 1 5.2784 -1.0766 3.8083 50 1 6.2271 -2.6543 3.9159 51 1 4.0584 -3.9661 3.8123 52 1 3.1095 -2.3881 3.7043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754449140.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:38 Heat of formation + Delta-G solvation = 42.579153 kcal Electronic energy + Delta-G solvation = -30084.560154 eV Core-core repulsion = 26243.441707 eV Total energy + Delta-G solvation = -3841.118447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -40.50798 -39.61555 -37.57738 -35.93668 -34.89183 -34.32570 -33.23017 -31.20703 -30.64115 -29.46616 -28.26524 -24.76506 -24.10174 -23.90991 -23.59860 -22.22201 -21.47684 -21.16338 -20.50664 -19.83143 -19.60296 -17.56907 -17.13543 -16.53769 -15.98200 -15.87434 -15.54539 -15.12146 -14.79623 -14.47332 -14.13341 -13.98861 -13.85874 -13.63562 -13.40554 -13.29254 -13.23836 -12.86354 -12.58098 -12.29730 -12.10105 -11.95889 -11.81124 -11.64680 -11.49926 -11.33970 -11.23152 -10.99286 -10.90560 -10.88350 -10.85272 -10.59794 -10.36039 -10.21418 -10.07144 -9.81116 -9.59182 -9.51068 -8.94051 -8.90439 -8.61779 -8.57716 -6.97582 -5.80019 -3.09580 1.16355 1.25410 2.74554 3.33196 3.40850 3.46744 3.48770 3.59797 4.06410 4.08184 4.49746 4.54820 4.63634 4.68860 4.81762 4.85959 4.90150 4.96929 5.03912 5.08012 5.18144 5.22472 5.22801 5.26621 5.38809 5.40352 5.45973 5.52735 5.59506 5.69576 5.75785 5.79391 5.85918 5.86043 5.90497 5.94137 6.01839 6.03337 6.06559 6.06986 6.16408 6.23973 6.33310 6.37586 6.42013 6.49246 6.53827 6.58603 6.69621 6.87288 6.95550 7.67048 7.87856 8.37783 8.55002 9.49915 10.05548 10.41277 11.42269 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.002878 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.406762 B = 9726.440706 C =11238.375008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.070 4.070 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.047 4.047 9 C -0.090 4.090 10 H 0.129 0.871 11 C -0.139 4.139 12 C -0.174 4.174 13 H 0.121 0.879 14 C 0.546 3.454 15 O -0.544 6.544 16 N -0.703 5.703 17 C 0.169 3.831 18 H 0.090 0.910 19 C 0.148 3.852 20 N -0.731 5.731 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.907 3.093 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.161 4.161 30 C -0.177 4.177 31 C -0.187 4.187 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.405 0.595 44 H 0.034 0.966 45 H 0.026 0.974 46 H 0.386 0.614 47 H 0.254 0.746 48 H 0.108 0.892 49 H 0.091 0.909 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 -1.678 -22.152 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.070 4.070 4 C -0.137 4.137 5 C -0.142 4.142 6 C -0.141 4.141 7 C -0.134 4.134 8 C -0.047 4.047 9 C -0.108 4.108 10 H 0.147 0.853 11 C -0.176 4.176 12 C -0.195 4.195 13 H 0.139 0.861 14 C 0.333 3.667 15 O -0.423 6.423 16 N -0.352 5.352 17 C 0.064 3.936 18 H 0.108 0.892 19 C 0.020 3.980 20 N -0.376 5.376 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.578 5.578 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.180 4.180 30 C -0.214 4.214 31 C -0.223 4.223 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.241 0.759 44 H 0.051 0.949 45 H 0.044 0.956 46 H 0.220 0.780 47 H 0.064 0.936 48 H 0.126 0.874 49 H 0.110 0.890 50 H 0.104 0.896 51 H 0.102 0.898 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.293 -2.277 -22.077 22.196 hybrid contribution 0.655 0.927 0.940 1.473 sum 0.362 -1.350 -21.137 21.184 Atomic orbital electron populations 1.21742 0.94641 1.01847 1.02100 1.20586 0.96324 0.92555 1.03189 1.19730 0.98693 0.96222 0.92362 1.21000 1.00163 0.95194 0.97316 1.21105 1.00194 0.94878 0.98000 1.21096 1.00624 0.99911 0.92501 1.21116 0.99243 0.94601 0.98481 1.19017 0.99097 0.93692 0.92881 1.21128 1.00528 1.02039 0.87094 0.85342 1.23133 0.99262 0.96334 0.98912 1.22310 0.96834 0.98240 1.02144 0.86118 1.19486 0.81029 0.86240 0.79954 1.90602 1.37260 1.44841 1.69559 1.45891 1.30320 1.23123 1.35900 1.20743 1.00598 0.82678 0.89584 0.89180 1.20911 0.95333 0.91910 0.89882 1.42350 1.39869 1.32421 1.22968 1.19251 1.12397 1.09319 0.96258 0.91115 1.24742 0.98431 0.98656 0.98989 1.69678 1.25473 1.23303 1.39379 0.86127 0.77929 0.78360 0.83812 1.20578 1.21884 1.21874 1.22699 1.03931 1.00893 0.90505 1.22867 0.95697 1.01061 1.01802 1.23323 0.98553 1.00005 1.00452 0.92855 0.92313 0.92230 0.91325 0.90140 0.86246 0.86324 0.86170 0.85679 0.87339 0.87524 0.75948 0.94875 0.95624 0.77982 0.93569 0.87356 0.89042 0.89608 0.89850 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.74 37.16 0.36 -0.98 16 2 C -0.09 -0.88 5.38 -27.88 -0.15 -1.03 16 3 C -0.07 -0.75 5.13 -104.62 -0.54 -1.28 16 4 C -0.12 -1.13 9.68 -39.58 -0.38 -1.51 16 5 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 6 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 7 C -0.12 -1.22 9.30 -39.58 -0.37 -1.59 16 8 C -0.05 -0.53 5.61 -104.62 -0.59 -1.12 16 9 C -0.09 -1.09 4.65 -91.77 -0.43 -1.52 16 10 H 0.13 1.70 5.48 -51.93 -0.28 1.42 16 11 C -0.14 -1.74 9.56 -26.73 -0.26 -2.00 16 12 C -0.17 -2.27 5.82 -91.77 -0.53 -2.80 16 13 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 14 C 0.55 8.57 6.45 -10.99 -0.07 8.50 16 15 O -0.54 -9.81 13.29 5.55 0.07 -9.73 16 16 N -0.70 -11.02 3.06 -53.81 -0.16 -11.18 16 17 C 0.17 2.83 2.59 -67.93 -0.18 2.65 16 18 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 19 C 0.15 2.85 5.80 -4.04 -0.02 2.83 16 20 N -0.73 -17.85 5.43 -59.91 -0.33 -18.18 16 21 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 25 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 C -0.16 -2.29 5.71 -90.62 -0.52 -2.81 16 30 C -0.18 -2.30 9.73 -26.73 -0.26 -2.56 16 31 C -0.19 -2.59 9.82 -26.73 -0.26 -2.85 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.60 7.17 -51.93 -0.37 0.23 16 35 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.08 0.90 6.95 -51.93 -0.36 0.54 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.13 1.19 6.02 -52.49 -0.32 0.88 16 41 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.11 1.15 6.18 -51.93 -0.32 0.83 16 43 H 0.41 6.18 8.60 -40.82 -0.35 5.83 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.39 10.04 7.33 -40.82 -0.30 9.74 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.11 1.44 8.11 -51.93 -0.42 1.02 16 49 H 0.09 1.21 6.67 -51.93 -0.35 0.87 16 50 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 52 H 0.12 1.86 5.02 -51.93 -0.26 1.60 16 LS Contribution 414.89 15.07 6.25 6.25 Total: -1.00 -30.72 414.89 -12.04 -42.76 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -8.34 Total: 18.14 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -5.23 Total: -18.31 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.23 Total: -56.17 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.72 -12.04 -42.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754449140.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.340 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds